@powersync/service-module-mongodb-storage 0.12.0 → 0.12.1

package/CHANGELOG.md

@@ -1,5 +1,16 @@
 # @powersync/service-module-mongodb-storage
 
+## 0.12.1
+
+### Patch Changes
+
+- 6352283: Fix pre-computing of checksums after intial replication causing replication timeouts
+- 6352283: Improve performance of the compact job
+- Updated dependencies [6352283]
+- Updated dependencies [6352283]
+  - @powersync/service-core@1.15.1
+  - @powersync/lib-service-mongodb@0.6.5
+
 ## 0.12.0
 
 ### Minor Changes

package/dist/storage/implementation/MongoChecksums.d.ts

@@ -0,0 +1,34 @@
+import { ChecksumMap, FetchPartialBucketChecksum, InternalOpId, PartialChecksumMap } from '@powersync/service-core';
+import { PowerSyncMongo } from './db.js';
+/**
+ * Checksum query implementation.
+ */
+export declare class MongoChecksums {
+    private db;
+    private group_id;
+    private cache;
+    constructor(db: PowerSyncMongo, group_id: number);
+    /**
+     * Calculate checksums, utilizing the cache.
+     */
+    getChecksums(checkpoint: InternalOpId, buckets: string[]): Promise<ChecksumMap>;
+    clearCache(): void;
+    /**
+     * Calculate (partial) checksums from bucket_state and the data collection.
+     *
+     * Results are not cached.
+     */
+    private getChecksumsInternal;
+    /**
+     * Calculate (partial) checksums from the data collection directly.
+     */
+    queryPartialChecksums(batch: FetchPartialBucketChecksum[]): Promise<PartialChecksumMap>;
+    private queryPartialChecksumsInternal;
+    /**
+     * Checksums for large buckets can run over the query timeout.
+     * To avoid this, we query in batches.
+     * This version can handle larger amounts of data, but is slower, especially for many buckets.
+     */
+    queryPartialChecksumsFallback(batch: FetchPartialBucketChecksum[]): Promise<PartialChecksumMap>;
+    private slowChecksum;
+}

package/dist/storage/implementation/MongoChecksums.js

@@ -0,0 +1,274 @@
+import { addPartialChecksums, bson, ChecksumCache, isPartialChecksum } from '@powersync/service-core';
+import * as lib_mongo from '@powersync/lib-service-mongodb';
+import { logger } from '@powersync/lib-services-framework';
+/**
+ * Checksum query implementation.
+ */
+export class MongoChecksums {
+    db;
+    group_id;
+    cache = new ChecksumCache({
+        fetchChecksums: (batch) => {
+            return this.getChecksumsInternal(batch);
+        }
+    });
+    constructor(db, group_id) {
+        this.db = db;
+        this.group_id = group_id;
+    }
+    /**
+     * Calculate checksums, utilizing the cache.
+     */
+    async getChecksums(checkpoint, buckets) {
+        return this.cache.getChecksumMap(checkpoint, buckets);
+    }
+    clearCache() {
+        this.cache.clear();
+    }
+    /**
+     * Calculate (partial) checksums from bucket_state and the data collection.
+     *
+     * Results are not cached.
+     */
+    async getChecksumsInternal(batch) {
+        if (batch.length == 0) {
+            return new Map();
+        }
+        const preFilters = [];
+        for (let request of batch) {
+            if (request.start == null) {
+                preFilters.push({
+                    _id: {
+                        g: this.group_id,
+                        b: request.bucket
+                    },
+                    'compacted_state.op_id': { $exists: true, $lte: request.end }
+                });
+            }
+        }
+        const preStates = new Map();
+        if (preFilters.length > 0) {
+            // For un-cached bucket checksums, attempt to use the compacted state first.
+            const states = await this.db.bucket_state
+                .find({
+                $or: preFilters
+            })
+                .toArray();
+            for (let state of states) {
+                const compactedState = state.compacted_state;
+                preStates.set(state._id.b, {
+                    opId: compactedState.op_id,
+                    checksum: {
+                        bucket: state._id.b,
+                        checksum: Number(compactedState.checksum),
+                        count: compactedState.count
+                    }
+                });
+            }
+        }
+        const mappedRequests = batch.map((request) => {
+            let start = request.start;
+            if (start == null) {
+                const preState = preStates.get(request.bucket);
+                if (preState != null) {
+                    start = preState.opId;
+                }
+            }
+            return {
+                ...request,
+                start
+            };
+        });
+        const queriedChecksums = await this.queryPartialChecksums(mappedRequests);
+        return new Map(batch.map((request) => {
+            const bucket = request.bucket;
+            // Could be null if this is either (1) a partial request, or (2) no compacted checksum was available
+            const preState = preStates.get(bucket);
+            // Could be null if we got no data
+            const partialChecksum = queriedChecksums.get(bucket);
+            const merged = addPartialChecksums(bucket, preState?.checksum ?? null, partialChecksum ?? null);
+            return [bucket, merged];
+        }));
+    }
+    /**
+     * Calculate (partial) checksums from the data collection directly.
+     */
+    async queryPartialChecksums(batch) {
+        try {
+            return await this.queryPartialChecksumsInternal(batch);
+        }
+        catch (e) {
+            if (e.codeName == 'MaxTimeMSExpired') {
+                logger.warn(`Checksum query timed out; falling back to slower version`, e);
+                // Timeout - try the slower but more robust version
+                return await this.queryPartialChecksumsFallback(batch);
+            }
+            throw lib_mongo.mapQueryError(e, 'while reading checksums');
+        }
+    }
+    async queryPartialChecksumsInternal(batch) {
+        const filters = [];
+        for (let request of batch) {
+            filters.push({
+                _id: {
+                    $gt: {
+                        g: this.group_id,
+                        b: request.bucket,
+                        o: request.start ?? new bson.MinKey()
+                    },
+                    $lte: {
+                        g: this.group_id,
+                        b: request.bucket,
+                        o: request.end
+                    }
+                }
+            });
+        }
+        const aggregate = await this.db.bucket_data
+            .aggregate([
+            {
+                $match: {
+                    $or: filters
+                }
+            },
+            CHECKSUM_QUERY_GROUP_STAGE
+        ], { session: undefined, readConcern: 'snapshot', maxTimeMS: lib_mongo.MONGO_CHECKSUM_TIMEOUT_MS })
+            // Don't map the error here - we want to keep timeout errors as-is
+            .toArray();
+        const partialChecksums = new Map(aggregate.map((doc) => {
+            const bucket = doc._id;
+            return [bucket, checksumFromAggregate(doc)];
+        }));
+        return new Map(batch.map((request) => {
+            const bucket = request.bucket;
+            // Could be null if we got no data
+            let partialChecksum = partialChecksums.get(bucket);
+            if (partialChecksum == null) {
+                partialChecksum = {
+                    bucket,
+                    partialCount: 0,
+                    partialChecksum: 0
+                };
+            }
+            if (request.start == null && isPartialChecksum(partialChecksum)) {
+                partialChecksum = {
+                    bucket,
+                    count: partialChecksum.partialCount,
+                    checksum: partialChecksum.partialChecksum
+                };
+            }
+            return [bucket, partialChecksum];
+        }));
+    }
+    /**
+     * Checksums for large buckets can run over the query timeout.
+     * To avoid this, we query in batches.
+     * This version can handle larger amounts of data, but is slower, especially for many buckets.
+     */
+    async queryPartialChecksumsFallback(batch) {
+        const partialChecksums = new Map();
+        for (let request of batch) {
+            const checksum = await this.slowChecksum(request);
+            partialChecksums.set(request.bucket, checksum);
+        }
+        return partialChecksums;
+    }
+    async slowChecksum(request) {
+        const batchLimit = 50_000;
+        let lowerBound = 0n;
+        const bucket = request.bucket;
+        let runningChecksum = {
+            bucket,
+            partialCount: 0,
+            partialChecksum: 0
+        };
+        if (request.start == null) {
+            runningChecksum = {
+                bucket,
+                count: 0,
+                checksum: 0
+            };
+        }
+        while (true) {
+            const filter = {
+                _id: {
+                    $gt: {
+                        g: this.group_id,
+                        b: bucket,
+                        o: lowerBound
+                    },
+                    $lte: {
+                        g: this.group_id,
+                        b: bucket,
+                        o: request.end
+                    }
+                }
+            };
+            const docs = await this.db.bucket_data
+                .aggregate([
+                {
+                    $match: filter
+                },
+                // sort and limit _before_ grouping
+                { $sort: { _id: 1 } },
+                { $limit: batchLimit },
+                CHECKSUM_QUERY_GROUP_STAGE
+            ], { session: undefined, readConcern: 'snapshot', maxTimeMS: lib_mongo.MONGO_CHECKSUM_TIMEOUT_MS })
+                .toArray();
+            const doc = docs[0];
+            if (doc == null) {
+                return runningChecksum;
+            }
+            const partial = checksumFromAggregate(doc);
+            runningChecksum = addPartialChecksums(bucket, runningChecksum, partial);
+            const isFinal = doc.count != batchLimit;
+            if (isFinal) {
+                break;
+            }
+            else {
+                lowerBound = doc.last_op;
+            }
+        }
+        return runningChecksum;
+    }
+}
+const CHECKSUM_QUERY_GROUP_STAGE = {
+    $group: {
+        _id: '$_id.b',
+        // Historically, checksum may be stored as 'int' or 'double'.
+        // More recently, this should be a 'long'.
+        // $toLong ensures that we always sum it as a long, avoiding inaccuracies in the calculations.
+        checksum_total: { $sum: { $toLong: '$checksum' } },
+        count: { $sum: 1 },
+        has_clear_op: {
+            $max: {
+                $cond: [{ $eq: ['$op', 'CLEAR'] }, 1, 0]
+            }
+        },
+        last_op: { $max: '$_id.o' }
+    }
+};
+/**
+ * Convert output of CHECKSUM_QUERY_GROUP_STAGE into a checksum.
+ */
+function checksumFromAggregate(doc) {
+    const partialChecksum = Number(BigInt(doc.checksum_total) & 0xffffffffn) & 0xffffffff;
+    const bucket = doc._id;
+    if (doc.has_clear_op == 1) {
+        return {
+            // full checksum - replaces any previous one
+            bucket,
+            checksum: partialChecksum,
+            count: doc.count
+        };
+    }
+    else {
+        return {
+            // partial checksum - is added to a previous one
+            bucket,
+            partialCount: doc.count,
+            partialChecksum
+        };
+    }
+}
+//# sourceMappingURL=MongoChecksums.js.map

package/dist/storage/implementation/MongoChecksums.js.map

@@ -0,0 +1 @@
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package/dist/storage/implementation/MongoCompactor.d.ts

@@ -1,13 +1,14 @@
 import { storage } from '@powersync/service-core';
 import { PowerSyncMongo } from './db.js';
+import { MongoSyncBucketStorage } from './MongoSyncBucketStorage.js';
 /**
  * Additional options, primarily for testing.
  */
 export interface MongoCompactOptions extends storage.CompactOptions {
 }
 export declare class MongoCompactor {
+    private storage;
     private db;
-    private group_id;
     private updates;
     private bucketStateUpdates;
     private idLimitBytes;
@@ -17,7 +18,8 @@ export declare class MongoCompactor {
     private maxOpId;
     private buckets;
     private signal?;
-    constructor(db: PowerSyncMongo, group_id: number, options?: MongoCompactOptions);
+    private group_id;
+    constructor(storage: MongoSyncBucketStorage, db: PowerSyncMongo, options?: MongoCompactOptions);
     /**
      * Compact buckets by converting operations into MOVE and/or CLEAR operations.
      *
@@ -38,4 +40,9 @@ export declare class MongoCompactor {
      * @param op op_id of the last non-PUT operation, which will be converted to CLEAR.
      */
     private clearBucket;
+    /**
+     * Subset of compact, only populating checksums where relevant.
+     */
+    populateChecksums(): Promise<void>;
+    private updateChecksumsBatch;
 }

package/dist/storage/implementation/MongoCompactor.js

@@ -1,16 +1,15 @@
-import { mongo } from '@powersync/lib-service-mongodb';
+import { mongo, MONGO_OPERATION_TIMEOUT_MS } from '@powersync/lib-service-mongodb';
 import { logger, ReplicationAssertionError, ServiceAssertionError } from '@powersync/lib-services-framework';
-import { addChecksums, utils } from '@powersync/service-core';
+import { addChecksums, isPartialChecksum, utils } from '@powersync/service-core';
 import { cacheKey } from './OperationBatch.js';
-import { readSingleBatch } from './util.js';
 const DEFAULT_CLEAR_BATCH_LIMIT = 5000;
 const DEFAULT_MOVE_BATCH_LIMIT = 2000;
 const DEFAULT_MOVE_BATCH_QUERY_LIMIT = 10_000;
 /** This default is primarily for tests. */
 const DEFAULT_MEMORY_LIMIT_MB = 64;
 export class MongoCompactor {
+    storage;
     db;
-    group_id;
     updates = [];
     bucketStateUpdates = [];
     idLimitBytes;
@@ -20,9 +19,11 @@ export class MongoCompactor {
     maxOpId;
     buckets;
     signal;
-    constructor(db, group_id, options) {
+    group_id;
+    constructor(storage, db, options) {
+        this.storage = storage;
         this.db = db;
-        this.group_id = group_id;
+        this.group_id = storage.group_id;
         this.idLimitBytes = (options?.memoryLimitMB ?? DEFAULT_MEMORY_LIMIT_MB) * 1024 * 1024;
         this.moveBatchLimit = options?.moveBatchLimit ?? DEFAULT_MOVE_BATCH_LIMIT;
         this.moveBatchQueryLimit = options?.moveBatchQueryLimit ?? DEFAULT_MOVE_BATCH_QUERY_LIMIT;
@@ -80,6 +81,21 @@ export class MongoCompactor {
             b: bucketUpper,
             o: new mongo.MaxKey()
         };
+        const doneWithBucket = async () => {
+            if (currentState == null) {
+                return;
+            }
+            // Free memory before clearing bucket
+            currentState.seen.clear();
+            if (currentState.lastNotPut != null && currentState.opsSincePut >= 1) {
+                logger.info(`Inserting CLEAR at ${this.group_id}:${currentState.bucket}:${currentState.lastNotPut} to remove ${currentState.opsSincePut} operations`);
+                // Need flush() before clear()
+                await this.flush();
+                await this.clearBucket(currentState);
+            }
+            // Do this _after_ clearBucket so that we have accurate counts.
+            this.updateBucketChecksums(currentState);
+        };
         while (!this.signal?.aborted) {
             // Query one batch at a time, to avoid cursor timeouts
             const cursor = this.db.bucket_data.aggregate([
@@ -105,8 +121,10 @@ export class MongoCompactor {
                         size: { $bsonSize: '$$ROOT' }
                     }
                 }
-            ]);
-            const { data: batch } = await readSingleBatch(cursor);
+            ], { batchSize: this.moveBatchQueryLimit });
+            // We don't limit to a single batch here, since that often causes MongoDB to scan through more than it returns.
+            // Instead, we load up to the limit.
+            const batch = await cursor.toArray();
             if (batch.length == 0) {
                 // We've reached the end
                 break;
@@ -115,19 +133,7 @@ export class MongoCompactor {
             upperBound = batch[batch.length - 1]._id;
             for (let doc of batch) {
                 if (currentState == null || doc._id.b != currentState.bucket) {
-                    if (currentState != null) {
-                        if (currentState.lastNotPut != null && currentState.opsSincePut >= 1) {
-                            // Important to flush before clearBucket()
-                            // Does not have to happen before flushBucketChecksums()
-                            await this.flush();
-                            logger.info(`Inserting CLEAR at ${this.group_id}:${currentState.bucket}:${currentState.lastNotPut} to remove ${currentState.opsSincePut} operations`);
-                            // Free memory before clearing bucket
-                            currentState.seen.clear();
-                            await this.clearBucket(currentState);
-                        }
-                        // Should happen after clearBucket() for accurate stats
-                        this.updateBucketChecksums(currentState);
-                    }
+                    await doneWithBucket();
                     currentState = {
                         bucket: doc._id.b,
                         seen: new Map(),
@@ -204,18 +210,11 @@ export class MongoCompactor {
                     await this.flush();
                 }
             }
+            if (currentState != null) {
+                logger.info(`Processed batch of length ${batch.length} current bucket: ${currentState.bucket}`);
+            }
         }
-        currentState?.seen.clear();
-        if (currentState?.lastNotPut != null && currentState?.opsSincePut > 1) {
-            logger.info(`Inserting CLEAR at ${this.group_id}:${currentState.bucket}:${currentState.lastNotPut} to remove ${currentState.opsSincePut} operations`);
-            // Need flush() before clear()
-            await this.flush();
-            await this.clearBucket(currentState);
-        }
-        if (currentState != null) {
-            // Do this _after_ clearBucket so that we have accurate counts.
-            this.updateBucketChecksums(currentState);
-        }
+        await doneWithBucket();
         // Need another flush after updateBucketChecksums()
         await this.flush();
     }
@@ -383,5 +382,81 @@ export class MongoCompactor {
             await session.endSession();
         }
     }
+    /**
+     * Subset of compact, only populating checksums where relevant.
+     */
+    async populateChecksums() {
+        let lastId = null;
+        while (!this.signal?.aborted) {
+            // By filtering buckets, we effectively make this "resumeable".
+            let filter = {
+                compacted_state: { $exists: false }
+            };
+            if (lastId) {
+                filter._id = { $gt: lastId };
+            }
+            const bucketsWithoutChecksums = await this.db.bucket_state
+                .find(filter, {
+                projection: {
+                    _id: 1
+                },
+                sort: {
+                    _id: 1
+                },
+                limit: 5_000,
+                maxTimeMS: MONGO_OPERATION_TIMEOUT_MS
+            })
+                .toArray();
+            if (bucketsWithoutChecksums.length == 0) {
+                // All done
+                break;
+            }
+            logger.info(`Calculating checksums for batch of ${bucketsWithoutChecksums.length} buckets`);
+            await this.updateChecksumsBatch(bucketsWithoutChecksums.map((b) => b._id.b));
+            lastId = bucketsWithoutChecksums[bucketsWithoutChecksums.length - 1]._id;
+        }
+    }
+    async updateChecksumsBatch(buckets) {
+        const checksums = await this.storage.checksums.queryPartialChecksums(buckets.map((bucket) => {
+            return {
+                bucket,
+                end: this.maxOpId
+            };
+        }));
+        for (let bucketChecksum of checksums.values()) {
+            if (isPartialChecksum(bucketChecksum)) {
+                // Should never happen since we don't specify `start`
+                throw new ServiceAssertionError(`Full checksum expected, got ${JSON.stringify(bucketChecksum)}`);
+            }
+            this.bucketStateUpdates.push({
+                updateOne: {
+                    filter: {
+                        _id: {
+                            g: this.group_id,
+                            b: bucketChecksum.bucket
+                        }
+                    },
+                    update: {
+                        $set: {
+                            compacted_state: {
+                                op_id: this.maxOpId,
+                                count: bucketChecksum.count,
+                                checksum: BigInt(bucketChecksum.checksum),
+                                bytes: null
+                            }
+                        },
+                        $setOnInsert: {
+                            // Only set this if we're creating the document.
+                            // In all other cases, the replication process will have a set a more accurate id.
+                            last_op: this.maxOpId
+                        }
+                    },
+                    // We generally expect this to have been created before, but do handle cases of old unchanged buckets
+                    upsert: true
+                }
+            });
+        }
+        await this.flush();
+    }
 }
 //# sourceMappingURL=MongoCompactor.js.map

package/dist/storage/implementation/MongoCompactor.js.map

@@ -1 +1 @@
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package/dist/storage/implementation/MongoSyncBucketStorage.d.ts

@@ -3,13 +3,14 @@ import { BaseObserver } from '@powersync/lib-services-framework';
 import { CheckpointChanges, CompactOptions, GetCheckpointChangesOptions, InternalOpId, ReplicationCheckpoint, storage, utils, WatchWriteCheckpointOptions } from '@powersync/service-core';
 import { ParameterLookup, SqliteJsonRow, SqlSyncRules } from '@powersync/service-sync-rules';
 import { MongoBucketStorage } from '../MongoBucketStorage.js';
+import { MongoChecksums } from './MongoChecksums.js';
 export declare class MongoSyncBucketStorage extends BaseObserver<storage.SyncRulesBucketStorageListener> implements storage.SyncRulesBucketStorage {
     readonly factory: MongoBucketStorage;
     readonly group_id: number;
     private readonly sync_rules;
     readonly slot_name: string;
     private readonly db;
-    private checksumCache;
+    readonly checksums: MongoChecksums;
     private parsedSyncRulesCache;
     private writeCheckpointAPI;
     constructor(factory: MongoBucketStorage, group_id: number, sync_rules: storage.PersistedSyncRulesContent, slot_name: string, writeCheckpointMode?: storage.WriteCheckpointMode);
@@ -26,14 +27,13 @@ export declare class MongoSyncBucketStorage extends BaseObserver<storage.SyncRul
     getBucketDataBatch(checkpoint: utils.InternalOpId, dataBuckets: Map<string, InternalOpId>, options?: storage.BucketDataBatchOptions): AsyncIterable<storage.SyncBucketDataChunk>;
     getChecksums(checkpoint: utils.InternalOpId, buckets: string[]): Promise<utils.ChecksumMap>;
     clearChecksumCache(): void;
-    private getChecksumsInternal;
     terminate(options?: storage.TerminateOptions): Promise<void>;
     getStatus(): Promise<storage.SyncRuleStatus>;
     clear(options?: storage.ClearStorageOptions): Promise<void>;
     private clearIteration;
     reportError(e: any): Promise<void>;
     compact(options?: storage.CompactOptions): Promise<void>;
-    populatePersistentChecksumCache(options: Pick<CompactOptions, 'signal' | 'maxOpId'>): Promise<void>;
+    populatePersistentChecksumCache(options: Required<Pick<CompactOptions, 'signal' | 'maxOpId'>>): Promise<void>;
     /**
      * Instance-wide watch on the latest available checkpoint (op_id + lsn).
      */