@possumtech/rummy 2.2.0 → 2.3.1

package/audit/sweep/build-cython-ext/logs.md

@@ -1,645 +0,0 @@
-# logs.md
-
-Chronological index of run entries — paths and brief titles only.
-
-Full bodies live in `turns/turn_NNN.md`. Verifier source in `verifier.md`. Files the model wrote in `deliverables.md`. Shell commands in `tools.md`. Web research in `searches.md`.
-
-
-| id | path | title |
-| --- | --- | --- |
-| 1 | `run://cli_1777680645612` | [run] |
-| 2 | `instructions://system` | [instructions] |
-| 3 | `prompt://1` | [prompt] pyknotid is a Python package for computational topology and knot theory. I wa… |
-| 4 | `repo://overview` | [repo] |
-| 5 | `assistant://1` | [assistant emission — see turns/] |
-| 6 | `system://1` | [system prompt] |
-| 7 | `user://1` | [user packet (assembled context)] |
-| 8 | `model://1` | [model usage record] |
-| 9 | `reasoning://1` | [think] Decompose prompt into key unknowns: - pyknotid repo structure, Numpy incompat… |
-| 10 | `unknown://pyknotid/repo-structure` | [unknown] Repository structure, files, setup.py/build config after cloning to /app/pykn… |
-| 11 | `log://turn_1/set/unknown%3A/pyknotid/repo-structure` | [set] unknown://pyknotid/repo-structure |
-| 12 | `unknown://pyknotid/numpy-compat` | [unknown] Specific Numpy >=2.0 incompatibility issues in Cython extensions (chelpers, c… |
-| 13 | `log://turn_1/set/unknown%3A/pyknotid/numpy-compat` | [set] unknown://pyknotid/numpy-compat |
-| 14 | `unknown://pyknotid/build-process` | [unknown] Steps to compile/install from source, dependencies, environment setup. |
-| 15 | `log://turn_1/set/unknown%3A/pyknotid/build-process` | [set] unknown://pyknotid/build-process |
-| 16 | `unknown://pyknotid/tests-status` | [unknown] Test suite results post-install, expected passes/fails. |
-| 17 | `log://turn_1/set/unknown%3A/pyknotid/tests-status` | [set] unknown://pyknotid/tests-status |
-| 18 | `unknown://pyknotid/example-code` | [unknown] Runtime status of provided README code snippet with Numpy 2.3.0. |
-| 19 | `log://turn_1/set/unknown%3A/pyknotid/example-code` | [set] unknown://pyknotid/example-code |
-| 20 | `log://turn_1/update/prompt_decomposed` | [update status=145] prompt decomposed |
-| 23 | `assistant://2` | [assistant emission — see turns/] |
-| 24 | `system://2` | [system prompt] |
-| 25 | `user://2` | [user packet (assembled context)] |
-| 26 | `model://2` | [model usage record] |
-| 27 | `reasoning://2` | [think] * Distillation Stage: Need to resolve 5 pyknotid unknowns by discovering sour… |
-| 28 | `log://turn_2/sh/git_clone_--depth_1_--branch_0.5.3_https%3A/github.com/SPOCKnots/pyknotid.git_/ap` | [sh] git clone --depth 1 --branch 0.5.3 https://github.com/SPOCKnots/pyknotid.git … |
-| 30 | `sh://turn_2/git_clone_--depth_1_--branch_0.5.3_https%3A/github.com/SPOCKnots/pyknotid.git_/ap_1` | [sh] |
-| 31 | `sh://turn_2/git_clone_--depth_1_--branch_0.5.3_https%3A/github.com/SPOCKnots/pyknotid.git_/ap_2` | [sh] |
-| 34 | `log://turn_2/get/app/pyknotid` | [get] app/pyknotid/ |
-| 35 | `log://turn_2/update/cloning_repo%3B_discovering_repo_structure` | [update status=155] cloning repo; discovering repo structure |
-| 38 | `assistant://3` | [assistant emission — see turns/] |
-| 39 | `system://3` | [system prompt] |
-| 40 | `user://3` | [user packet (assembled context)] |
-| 41 | `model://3` | [model usage record] |
-| 42 | `reasoning://3` | [think] - Repo cloned to /app/pyknotid per log (turn 2 success). - Next: discover rep… |
-| 43 | `log://turn_3/get/app/pyknotid` | [get] app/pyknotid/ |
-| 44 | `log://turn_3/update/discovering_repo_structure` | [update status=155] discovering repo structure |
-| 47 | `assistant://4` | [assistant emission — see turns/] |
-| 48 | `system://4` | [system prompt] |
-| 49 | `user://4` | [user packet (assembled context)] |
-| 50 | `model://4` | [model usage record] |
-| 51 | `reasoning://4` | [think] - In Distillation Stage: Need to discover sources to resolve unknowns, especi… |
-| 52 | `log://turn_4/get/app/pyknotid` | [get] /app/pyknotid/ |
-| 53 | `log://turn_4/get/app/pyknotid/**` | [get] /app/pyknotid/** |
-| 54 | `log://turn_4/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 55 | `log://turn_4/get/app/pyknotid/**_1` | [get] /app/pyknotid/** |
-| 56 | `log://turn_4/get/app/pyknotid/tests` | [get] /app/pyknotid/tests/ |
-| 57 | `log://turn_4/update/discovering_repo_structure_and_sources` | [update status=155] discovering repo structure and sources |
-| 60 | `assistant://5` | [assistant emission — see turns/] |
-| 61 | `system://5` | [system prompt] |
-| 62 | `user://5` | [user packet (assembled context)] |
-| 63 | `model://5` | [model usage record] |
-| 64 | `reasoning://5` | [think] * In Distillation Stage: Need to discover sources to resolve unknowns, especi… |
-| 65 | `log://turn_5/get/app/pyknotid` | [get] /app/pyknotid/ |
-| 66 | `log://turn_5/env/python_--version%3B_python_-c_%22import_numpy%3B_print(numpy.__version__)%22` | [env] python --version; python -c "import numpy; print(numpy.__version__)" |
-| 68 | `env://turn_5/python_--version%3B_python_-c_%22import_numpy%3B_print(numpy.__version__)%22_1` | [env] |
-| 69 | `env://turn_5/python_--version%3B_python_-c_%22import_numpy%3B_print(numpy.__version__)%22_2` | [env] |
-| 72 | `log://turn_5/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 73 | `log://turn_5/get/app/pyknotid/**` | [get] /app/pyknotid/** |
-| 74 | `log://turn_5/get/app/pyknotid/tests` | [get] /app/pyknotid/tests/ |
-| 75 | `log://turn_5/update/discovering_repo_structure_and_env` | [update status=155] discovering repo structure and env |
-| 78 | `assistant://6` | [assistant emission — see turns/] |
-| 79 | `system://6` | [system prompt] |
-| 80 | `user://6` | [user packet (assembled context)] |
-| 81 | `model://6` | [model usage record] |
-| 82 | `reasoning://6` | [think] * In Distillation Stage: Need to discover sources to resolve unknowns, especi… |
-| 83 | `log://turn_6/get/app/pyknotid` | [get] /app/pyknotid/ |
-| 84 | `log://turn_6/get/app/pyknotid/**` | [get] /app/pyknotid/** |
-| 85 | `log://turn_6/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 86 | `log://turn_6/get/app/pyknotid/tests` | [get] /app/pyknotid/tests/ |
-| 87 | `log://turn_6/update/listing_repo_files_for_structure_discovery` | [update status=155] listing repo files for structure discovery |
-| 90 | `assistant://7` | [assistant emission — see turns/] |
-| 91 | `system://7` | [system prompt] |
-| 92 | `user://7` | [user packet (assembled context)] |
-| 93 | `model://7` | [model usage record] |
-| 94 | `reasoning://7` | [think] * Still in Distillation Stage. * Primary blocker: unknown://pyknotid/repo-str… |
-| 95 | `log://turn_7/get/app/pyknotid` | [get] /app/pyknotid/ |
-| 96 | `log://turn_7/get/app/pyknotid/**` | [get] /app/pyknotid/** |
-| 97 | `log://turn_7/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 98 | `log://turn_7/get/app/pyknotid/pyknotid` | [get] /app/pyknotid/pyknotid/ |
-| 99 | `log://turn_7/get/app/pyknotid/tests` | [get] /app/pyknotid/tests/ |
-| 100 | `log://turn_7/update/listing_repo_files_for_structure_discovery` | [update status=155] listing repo files for structure discovery |
-| 103 | `assistant://8` | [assistant emission — see turns/] |
-| 104 | `system://8` | [system prompt] |
-| 105 | `user://8` | [user packet (assembled context)] |
-| 106 | `model://8` | [model usage record] |
-| 107 | `reasoning://8` | [think] * Still in Distillation Stage. * Primary blocker: unknown://pyknotid/repo-str… |
-| 108 | `log://turn_8/get/app` | [get] /app/ |
-| 109 | `log://turn_8/get/app/pyknotid` | [get] /app/pyknotid/ |
-| 110 | `log://turn_8/get/app/pyknotid/**` | [get] /app/pyknotid/** |
-| 111 | `log://turn_8/update/listing_actual_repo_files/dirs_for_structure_discovery` | [update status=155] listing actual repo files/dirs for structure discovery |
-| 114 | `assistant://9` | [assistant emission — see turns/] |
-| 115 | `system://9` | [system prompt] |
-| 116 | `user://9` | [user packet (assembled context)] |
-| 117 | `model://9` | [model usage record] |
-| 118 | `reasoning://9` | [think] * In Distillation Stage: Need to discover sources to resolve unknowns, especi… |
-| 119 | `log://turn_9/get/app` | [get] /app/ |
-| 120 | `log://turn_9/get/app/pyknotid` | [get] /app/pyknotid/ |
-| 121 | `log://turn_9/get/app/pyknotid/**` | [get] /app/pyknotid/** |
-| 122 | `log://turn_9/update/discovering_repo_file_structure_with_previews/manifest` | [update status=155] discovering repo file structure with previews/manifest |
-| 125 | `assistant://10` | [assistant emission — see turns/] |
-| 126 | `system://10` | [system prompt] |
-| 127 | `user://10` | [user packet (assembled context)] |
-| 128 | `model://10` | [model usage record] |
-| 129 | `reasoning://10` | [think] * In Distillation Stage: Need to resolve unknown://pyknotid/repo-structure fi… |
-| 130 | `log://turn_10/get/app` | [get] /app/ |
-| 131 | `log://turn_10/get/app/pyknotid` | [get] /app/pyknotid/ |
-| 132 | `log://turn_10/get/app/pyknotid/**` | [get] /app/pyknotid/** |
-| 133 | `log://turn_10/get/app/pyknotid/**_2` | [get] /app/pyknotid/** |
-| 134 | `log://turn_10/update/listing_repo_contents_with_previews/manifest_for_structure` | [update status=155] listing repo contents with previews/manifest for structure |
-| 137 | `assistant://11` | [assistant emission — see turns/] |
-| 138 | `system://11` | [system prompt] |
-| 139 | `user://11` | [user packet (assembled context)] |
-| 140 | `model://11` | [model usage record] |
-| 141 | `reasoning://11` | [think] Distillation Stage: Prioritize unknown://pyknotid/repo-structure since repeat… |
-| 142 | `log://turn_11/get/app` | [get] /app/ |
-| 143 | `log://turn_11/get/app/pyknotid` | [get] /app/pyknotid/ |
-| 144 | `log://turn_11/get/app/pyknotid/**` | [get] /app/pyknotid/** |
-| 145 | `log://turn_11/update/listing_/app/pyknotid_contents_for_repo_structure` | [update status=155] listing /app/pyknotid contents for repo structure |
-| 148 | `assistant://12` | [assistant emission — see turns/] |
-| 149 | `system://12` | [system prompt] |
-| 150 | `user://12` | [user packet (assembled context)] |
-| 151 | `model://12` | [model usage record] |
-| 152 | `reasoning://12` | [think] * Still in Distillation Stage, focusing on unknown://pyknotid/repo-structure … |
-| 153 | `log://turn_12/get/app` | [get] /app/ |
-| 154 | `log://turn_12/get/app/pyknotid` | [get] /app/pyknotid/ |
-| 155 | `log://turn_12/get/app/pyknotid/**` | [get] /app/pyknotid/** |
-| 156 | `log://turn_12/update/listing_/app/pyknotid_actual_files_for_repo_structure` | [update status=155] listing /app/pyknotid actual files for repo structure |
-| 159 | `assistant://13` | [assistant emission — see turns/] |
-| 160 | `system://13` | [system prompt] |
-| 161 | `user://13` | [user packet (assembled context)] |
-| 162 | `model://13` | [model usage record] |
-| 163 | `reasoning://13` | [think] * Still in Distillation Stage, focusing on unknown://pyknotid/repo-structure … |
-| 164 | `log://turn_13/env/ls_-la_/app` | [env] ls -la /app/ |
-| 166 | `env://turn_13/ls_-la_/app_1` | [env] |
-| 167 | `env://turn_13/ls_-la_/app_2` | [env] |
-| 170 | `log://turn_13/env/find_/app_-name_%22*pyknot*%22_-type_d_2%3E/dev/null_%7C%7C_echo_%22no_pyknot_dirs_found%22` | [env] find /app -name "*pyknot*" -type d 2>/dev/null \|\| echo "no pyknot dirs found" |
-| 172 | `env://turn_13/find_/app_-name_%22*pyknot*%22_-type_d_2%3E/dev/null_%7C%7C_echo_%22no_pyknot_dirs_found%22_1` | [env] |
-| 173 | `env://turn_13/find_/app_-name_%22*pyknot*%22_-type_d_2%3E/dev/null_%7C%7C_echo_%22no_pyknot_dirs_found%22_2` | [env] |
-| 176 | `log://turn_13/env/ls_-la_/app/pyknotid/_2%3E/dev/null_%7C%7C_echo_%22/app/pyknotid_not_accessible%22` | [env] ls -la /app/pyknotid/ 2>/dev/null \|\| echo "/app/pyknotid not accessible" |
-| 178 | `env://turn_13/ls_-la_/app/pyknotid/_2%3E/dev/null_%7C%7C_echo_%22/app/pyknotid_not_accessible%22_1` | [env] |
-| 179 | `env://turn_13/ls_-la_/app/pyknotid/_2%3E/dev/null_%7C%7C_echo_%22/app/pyknotid_not_accessible%22_2` | [env] |
-| 182 | `log://turn_13/update/locating_actual_repo_path_for_structure_discovery` | [update status=155] locating actual repo path for structure discovery |
-| 185 | `assistant://14` | [assistant emission — see turns/] |
-| 186 | `system://14` | [system prompt] |
-| 187 | `user://14` | [user packet (assembled context)] |
-| 188 | `model://14` | [model usage record] |
-| 189 | `reasoning://14` | [think] * In Distillation Stage: Need to resolve unknown://pyknotid/repo-structure fi… |
-| 190 | `log://turn_14/get/env%3A/turn_13/ls_-la_/app/pyknotid/_2%253E/dev/null_%257C%257C_echo_%2522/app/pyknotid_n` | [get] env://turn_13/ls_-la_/app/pyknotid/_2%3E/dev/null_%7C%7C_echo_%22/app/pyknoti… |
-| 191 | `log://turn_14/get/env%3A/turn_13/find_/app_-name_%2522*pyknot*%2522_-type_d_2%253E/dev/null_%257C%257C_echo_%25` | [get] env://turn_13/find_/app_-name_%22*pyknot*%22_-type_d_2%3E/dev/null_%7C%7C_ech… |
-| 192 | `log://turn_14/get/sh%3A/turn_2/git_clone_--depth_1_--branch_0.5.3_https%253A/github.com/SPOCKnots/pyk` | [get] sh://turn_2/git_clone_--depth_1_--branch_0.5.3_https%3A/github.com/SPOCKnots/… |
-| 193 | `log://turn_14/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 194 | `log://turn_14/get/app/pyknotid/pyknotid/**` | [get] /app/pyknotid/pyknotid/** |
-| 195 | `log://turn_14/get/app/pyknotid/tests/**` | [get] /app/pyknotid/tests/** |
-| 196 | `known://pyknotid/repo-structure` | [known] # Related [prompt](prompt://1) [unknown resolved](unknown://pyknotid/repo-str… |
-| 197 | `log://turn_14/set/known%3A/pyknotid/repo-structure` | [set] known://pyknotid/repo-structure |
-| 198 | `log://turn_14/set/unknown%3A/pyknotid/repo-structure` | [set] (no target) |
-| 199 | `log://turn_14/update/distilled_repo-structure%3B_planning_setup.py_%26_build_discovery` | [update status=155] distilled repo-structure; planning setup.py & build discovery |
-| 202 | `assistant://15` | [assistant emission — see turns/] |
-| 203 | `system://15` | [system prompt] |
-| 204 | `user://15` | [user packet (assembled context)] |
-| 205 | `model://15` | [model usage record] |
-| 206 | `reasoning://15` | [think] * Distillation stage: Resolve remaining unknowns using repo sources. * Priori… |
-| 207 | `log://turn_15/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 208 | `log://turn_15/get/app/pyknotid/README.rst` | [get] /app/pyknotid/README.rst |
-| 209 | `log://turn_15/get/app/pyknotid/pyknotid/**` | [get] /app/pyknotid/pyknotid/** |
-| 210 | `log://turn_15/get/app/pyknotid/tests/**` | [get] /app/pyknotid/tests/** |
-| 211 | `log://turn_15/update/distilling_build-process_from_setup.py_%2B_sources` | [update status=155] distilling build-process from setup.py + sources |
-| 214 | `assistant://16` | [assistant emission — see turns/] |
-| 215 | `system://16` | [system prompt] |
-| 216 | `user://16` | [user packet (assembled context)] |
-| 217 | `model://16` | [model usage record] |
-| 218 | `reasoning://16` | [think] * Distillation stage: Resolve remaining unknowns by discovering sources. * Pr… |
-| 219 | `log://turn_16/env/ls_-la_/app/pyknotid/pyknotid` | [env] ls -la /app/pyknotid/pyknotid/ |
-| 221 | `env://turn_16/ls_-la_/app/pyknotid/pyknotid_1` | [env] |
-| 222 | `env://turn_16/ls_-la_/app/pyknotid/pyknotid_2` | [env] |
-| 225 | `log://turn_16/env/ls_-la_/app/pyknotid/pyknotid/*.pyx_2%3E/dev/null_%7C%7C_echo_%22no_.pyx_in_pyknotid/%22` | [env] ls -la /app/pyknotid/pyknotid/*.pyx 2>/dev/null \|\| echo "no .pyx in pyknotid/" |
-| 227 | `env://turn_16/ls_-la_/app/pyknotid/pyknotid/*.pyx_2%3E/dev/null_%7C%7C_echo_%22no_.pyx_in_pyknotid/%22_1` | [env] |
-| 228 | `env://turn_16/ls_-la_/app/pyknotid/pyknotid/*.pyx_2%3E/dev/null_%7C%7C_echo_%22no_.pyx_in_pyknotid/%22_2` | [env] |
-| 231 | `log://turn_16/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 232 | `log://turn_16/get/app/pyknotid/README.rst` | [get] /app/pyknotid/README.rst |
-| 233 | `log://turn_16/get/app/pyknotid/pyknotid` | [get] /app/pyknotid/pyknotid/ |
-| 234 | `log://turn_16/update/distilling_build-process_from_setup.py_%2B_pyknotid/_sources` | [update status=155] distilling build-process from setup.py + pyknotid/ sources |
-| 237 | `assistant://17` | [assistant emission — see turns/] |
-| 238 | `system://17` | [system prompt] |
-| 239 | `user://17` | [user packet (assembled context)] |
-| 240 | `model://17` | [model usage record] |
-| 241 | `reasoning://17` | [think] * In Distillation Stage: Resolve remaining unknowns by discovering sources th… |
-| 242 | `log://turn_17/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 244 | `log://turn_17/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 246 | `log://turn_17/update/discovering_setup.py_%2B_.pyx_sources_for_build-process_distillation` | [update status=155] discovering setup.py + .pyx sources for build-process distillation |
-| 249 | `assistant://18` | [assistant emission — see turns/] |
-| 250 | `system://18` | [system prompt] |
-| 251 | `user://18` | [user packet (assembled context)] |
-| 252 | `model://18` | [model usage record] |
-| 253 | `reasoning://18` | [think] * We're in Distillation Stage, resolving unknowns like build-process, numpy-c… |
-| 254 | `log://turn_18/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 255 | `log://turn_18/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 256 | `log://turn_18/get/app/pyknotid/pyknotid/invariants.py` | [get] /app/pyknotid/pyknotid/invariants.py |
-| 257 | `log://turn_18/update/promoting_setup.py_%2B_.pyx_sources_for_build-process_distillation` | [update status=155] promoting setup.py + .pyx sources for build-process distillation |
-| 260 | `assistant://19` | [assistant emission — see turns/] |
-| 261 | `system://19` | [system prompt] |
-| 262 | `user://19` | [user packet (assembled context)] |
-| 263 | `model://19` | [model usage record] |
-| 264 | `reasoning://19` | [think] * We're in Distillation Stage, focusing on resolving unknowns like build-proc… |
-| 265 | `log://turn_19/env/ls_-la_/app/pyknotid/setup.py` | [env] ls -la /app/pyknotid/setup.py |
-| 267 | `env://turn_19/ls_-la_/app/pyknotid/setup.py_1` | [env] |
-| 268 | `env://turn_19/ls_-la_/app/pyknotid/setup.py_2` | [env] |
-| 271 | `log://turn_19/env/ls_-la_/app/pyknotid/pyknotid/cinvariants.pyx` | [env] ls -la /app/pyknotid/pyknotid/cinvariants.pyx |
-| 273 | `env://turn_19/ls_-la_/app/pyknotid/pyknotid/cinvariants.pyx_1` | [env] |
-| 274 | `env://turn_19/ls_-la_/app/pyknotid/pyknotid/cinvariants.pyx_2` | [env] |
-| 277 | `log://turn_19/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 278 | `log://turn_19/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 279 | `log://turn_19/update/promoting_setup.py_%2B_cinvariants.pyx_for_build-process_distillation` | [update status=155] promoting setup.py + cinvariants.pyx for build-process distillation |
-| 282 | `assistant://20` | [assistant emission — see turns/] |
-| 283 | `system://20` | [system prompt] |
-| 284 | `user://20` | [user packet (assembled context)] |
-| 285 | `model://20` | [model usage record] |
-| 286 | `reasoning://20` | [think] * In Distillation Stage, targeting unknown://pyknotid/build-process next (mos… |
-| 287 | `log://turn_20/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 288 | `log://turn_20/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 289 | `log://turn_20/get/env%3A/turn_16/ls_-la_/app/pyknotid/pyknotid_1` | [get] env://turn_16/ls_-la_/app/pyknotid/pyknotid_1 |
-| 290 | `log://turn_20/update/promoting_setup.py_%2B_cinvariants.pyx_for_build-process_distillation` | [update status=155] promoting setup.py + cinvariants.pyx for build-process distillation |
-| 293 | `assistant://21` | [assistant emission — see turns/] |
-| 294 | `system://21` | [system prompt] |
-| 295 | `user://21` | [user packet (assembled context)] |
-| 296 | `model://21` | [model usage record] |
-| 297 | `reasoning://21` | [think] * In Distillation Stage, need to resolve remaining unknowns: build-process, n… |
-| 298 | `log://turn_21/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 299 | `log://turn_21/get/app/pyknotid/pyknotid/*.pyx` | [get] /app/pyknotid/pyknotid/*.pyx |
-| 300 | `log://turn_21/env/ls_-la_/app/pyknotid/pyknotid/*.pyx%3B_ls_-la_/app/pyknotid/setup.py` | [env] ls -la /app/pyknotid/pyknotid/*.pyx; ls -la /app/pyknotid/setup.py |
-| 302 | `env://turn_21/ls_-la_/app/pyknotid/pyknotid/*.pyx%3B_ls_-la_/app/pyknotid/setup.py_1` | [env] |
-| 303 | `env://turn_21/ls_-la_/app/pyknotid/pyknotid/*.pyx%3B_ls_-la_/app/pyknotid/setup.py_2` | [env] |
-| 307 | `log://turn_21/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 308 | `log://turn_21/update/promoting_setup.py_%2B_.pyx_sources_for_build-process_distillation` | [update status=155] promoting setup.py + .pyx sources for build-process distillation |
-| 311 | `assistant://22` | [assistant emission — see turns/] |
-| 312 | `system://22` | [system prompt] |
-| 313 | `user://22` | [user packet (assembled context)] |
-| 314 | `model://22` | [model usage record] |
-| 315 | `reasoning://22` | [think] * We're in Distillation Stage, focusing on unknown://pyknotid/build-process n… |
-| 316 | `log://turn_22/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 318 | `log://turn_22/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 319 | `log://turn_22/env/ls_-la_/app/pyknotid/pyknotid/*.pyx_2%3E/dev/null_%7C%7C_echo_%22no_.pyx_files%22` | [env] ls -la /app/pyknotid/pyknotid/*.pyx 2>/dev/null \|\| echo "no .pyx files" |
-| 321 | `env://turn_22/ls_-la_/app/pyknotid/pyknotid/*.pyx_2%3E/dev/null_%7C%7C_echo_%22no_.pyx_files%22_1` | [env] |
-| 322 | `env://turn_22/ls_-la_/app/pyknotid/pyknotid/*.pyx_2%3E/dev/null_%7C%7C_echo_%22no_.pyx_files%22_2` | [env] |
-| 325 | `log://turn_22/get/env%3A/turn_16/ls_-la_/app/pyknotid/pyknotid/*.pyx_2%253E/dev/null_%257C%257C_echo_%2522n` | [get] env://turn_16/ls_-la_/app/pyknotid/pyknotid/*.pyx_2%3E/dev/null_%7C%7C_echo_%… |
-| 326 | `log://turn_22/update/distilling_pyknotid/build-process_from_setup.py_%2B_.pyx_sources` | [update status=155] distilling pyknotid/build-process from setup.py + .pyx sources |
-| 329 | `assistant://23` | [assistant emission — see turns/] |
-| 330 | `system://23` | [system prompt] |
-| 331 | `user://23` | [user packet (assembled context)] |
-| 332 | `model://23` | [model usage record] |
-| 333 | `reasoning://23` | [think] * We're in Distillation Stage, focusing on unknown://pyknotid/build-process n… |
-| 334 | `log://turn_23/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 336 | `log://turn_23/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 338 | `log://turn_23/get/app/pyknotid/pyknotid/*.pyx` | [get] /app/pyknotid/pyknotid/*.pyx |
-| 339 | `log://turn_23/update/slicing_setup.py_%2B_cinvariants.pyx_for_build-process_distillation` | [update status=155] slicing setup.py + cinvariants.pyx for build-process distillation |
-| 342 | `assistant://24` | [assistant emission — see turns/] |
-| 343 | `system://24` | [system prompt] |
-| 344 | `user://24` | [user packet (assembled context)] |
-| 345 | `model://24` | [model usage record] |
-| 346 | `reasoning://24` | [think] * We're in Distillation Stage targeting unknown://pyknotid/build-process * Ha… |
-| 347 | `log://turn_24/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 348 | `log://turn_24/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 349 | `log://turn_24/update/promoting_setup.py_%2B_cinvariants.pyx_for_build-process_distillation` | [update status=155] promoting setup.py + cinvariants.pyx for build-process distillation |
-| 352 | `assistant://25` | [assistant emission — see turns/] |
-| 353 | `system://25` | [system prompt] |
-| 354 | `user://25` | [user packet (assembled context)] |
-| 355 | `model://25` | [model usage record] |
-| 356 | `reasoning://25` | [think] * In Distillation Stage, targeting unknown://pyknotid/build-process next (mos… |
-| 357 | `log://turn_25/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 359 | `log://turn_25/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 361 | `log://turn_25/update/slicing_setup.py%2Bpyx_for_build-process_distillation` | [update status=155] slicing setup.py+pyx for build-process distillation |
-| 364 | `assistant://26` | [assistant emission — see turns/] |
-| 365 | `system://26` | [system prompt] |
-| 366 | `user://26` | [user packet (assembled context)] |
-| 367 | `model://26` | [model usage record] |
-| 368 | `reasoning://26` | [think] * Current stage: Distillation - resolving unknown://pyknotid/build-process (t… |
-| 369 | `log://turn_26/get/app/pyknotid/setup.py` | [get] /app/pyknotid/setup.py |
-| 370 | `log://turn_26/get/app/pyknotid/pyknotid/cinvariants.pyx` | [get] /app/pyknotid/pyknotid/cinvariants.pyx |
-| 371 | `log://turn_26/get/app/pyknotid/pyknotid/__init__.py` | [get] /app/pyknotid/pyknotid/__init__.py |
-| 372 | `log://turn_26/env/ls_-la_/app/pyknotid/pyknotid/*.pyx%3B_ls_-la_/app/pyknotid/pyknotid/chelpers*.pyx` | [env] ls -la /app/pyknotid/pyknotid/*.pyx; ls -la /app/pyknotid/pyknotid/chelpers*.… |
-| 374 | `env://turn_26/ls_-la_/app/pyknotid/pyknotid/*.pyx%3B_ls_-la_/app/pyknotid/pyknotid/chelpers*.pyx_1` | [env] |
-| 375 | `env://turn_26/ls_-la_/app/pyknotid/pyknotid/*.pyx%3B_ls_-la_/app/pyknotid/pyknotid/chelpers*.pyx_2` | [env] |
-| 378 | `log://turn_26/update/promoting_setup.py_%2B_.pyx_sources_for_build-process_distillation` | [update status=155] promoting setup.py + .pyx sources for build-process distillation |
-| 381 | `assistant://27` | [assistant emission — see turns/] |
-| 382 | `system://27` | [system prompt] |
-| 383 | `user://27` | [user packet (assembled context)] |
-| 384 | `model://27` | [model usage record] |
-| 385 | `reasoning://27` | [think] * We're in Distillation Stage, targeting unknown://pyknotid/build-process nex… |
-| 386 | `log://turn_27/env/cat_/app/pyknotid/setup.py` | [env] cat /app/pyknotid/setup.py |
-| 388 | `env://turn_27/cat_/app/pyknotid/setup.py_1` | [env] |
-| 389 | `env://turn_27/cat_/app/pyknotid/setup.py_2` | [env] |
-| 392 | `log://turn_27/env/cat_/app/pyknotid/pyknotid/cinvariants.pyx` | [env] cat /app/pyknotid/pyknotid/cinvariants.pyx |
-| 394 | `env://turn_27/cat_/app/pyknotid/pyknotid/cinvariants.pyx_1` | [env] |
-| 395 | `env://turn_27/cat_/app/pyknotid/pyknotid/cinvariants.pyx_2` | [env] |
-| 398 | `log://turn_27/get/env%3A/turn_16/ls_-la_/app/pyknotid/pyknotid_1` | [get] env://turn_16/ls_-la_/app/pyknotid/pyknotid_1 |
-| 399 | `log://turn_27/update/distilling_pyknotid/build-process_from_setup.py_%2B_cinvariants.pyx` | [update status=155] distilling pyknotid/build-process from setup.py + cinvariants.pyx |
-| 402 | `assistant://28` | [assistant emission — see turns/] |
-| 403 | `system://28` | [system prompt] |
-| 404 | `user://28` | [user packet (assembled context)] |
-| 405 | `model://28` | [model usage record] |
-| 406 | `reasoning://28` | [think] Current stage: Distillation. Focus: unknown://pyknotid/build-process (highest… |
-| 407 | `log://turn_28/get/env%3A/turn_27/cat_/app/pyknotid/setup.py_1` | [get] env://turn_27/cat_/app/pyknotid/setup.py_1 |
-| 408 | `log://turn_28/get/env%3A/turn_27/cat_/app/pyknotid/pyknotid/cinvariants.pyx_1` | [get] env://turn_27/cat_/app/pyknotid/pyknotid/cinvariants.pyx_1 |
-| 409 | `log://turn_28/env/ls_-la_/app/pyknotid/pyknotid/chelpers*.pyx_/app/pyknotid/pyknotid/ccomplexity*.` | [env] ls -la /app/pyknotid/pyknotid/chelpers*.pyx /app/pyknotid/pyknotid/ccomplexit… |
-| 411 | `env://turn_28/ls_-la_/app/pyknotid/pyknotid/chelpers*.pyx_/app/pyknotid/pyknotid/ccomplexity*._1` | [env] |
-| 412 | `env://turn_28/ls_-la_/app/pyknotid/pyknotid/chelpers*.pyx_/app/pyknotid/pyknotid/ccomplexity*._2` | [env] |
-| 415 | `log://turn_28/get/env%3A/turn_16/ls_-la_/app/pyknotid/pyknotid_1` | [get] env://turn_16/ls_-la_/app/pyknotid/pyknotid_1 |
-| 416 | `log://turn_28/update/distilling_pyknotid/build-process_from_full_setup.py_%2B_.pyx_sources` | [update status=155] distilling pyknotid/build-process from full setup.py + .pyx sources |
-| 419 | `assistant://29` | [assistant emission — see turns/] |
-| 420 | `system://29` | [system prompt] |
-| 421 | `user://29` | [user packet (assembled context)] |
-| 422 | `model://29` | [model usage record] |
-| 423 | `reasoning://29` | [think] * Current stage: Distillation - resolving unknown://pyknotid/build-process us… |
-| 424 | `log://turn_29/get/env%3A/turn_27/cat_/app/pyknotid/pyknotid/cinvariants.pyx_1` | [get] env://turn_27/cat_/app/pyknotid/pyknotid/cinvariants.pyx_1 |
-| 425 | `log://turn_29/get/env%3A/turn_27/cat_/app/pyknotid/setup.py_1` | [get] env://turn_27/cat_/app/pyknotid/setup.py_1 |
-| 426 | `known://pyknotid/build-process` | [known] # Related [prompt](prompt://1) [unknown resolved](unknown://pyknotid/build-pr… |
-| 427 | `log://turn_29/set/known%3A/pyknotid/build-process` | [set] known://pyknotid/build-process |
-| 428 | `log://turn_29/set/unknown%3A/pyknotid/build-process` | [set] (no target) |
-| 429 | `log://turn_29/env/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/spacecurves/_pyknotid/simplify/_2%3E/dev/null_` | [env] cd /app/pyknotid && ls -la pyknotid/spacecurves/ pyknotid/simplify/ 2>/dev/nu… |
-| 431 | `env://turn_29/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/spacecurves/_pyknotid/simplify/_2%3E/dev/null__1` | [env] |
-| 432 | `env://turn_29/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/spacecurves/_pyknotid/simplify/_2%3E/dev/null__2` | [env] |
-| 435 | `log://turn_29/update/distilled_build-process%3B_checking_missing_.pyx_dirs` | [update status=155] distilled build-process; checking missing .pyx dirs |
-| 438 | `assistant://30` | [assistant emission — see turns/] |
-| 439 | `system://30` | [system prompt] |
-| 440 | `user://30` | [user packet (assembled context)] |
-| 441 | `model://30` | [model usage record] |
-| 442 | `reasoning://30` | [think] - In Distillation Stage, resolving remaining unknowns from prompt://1 - known… |
-| 443 | `log://turn_30/get/env%3A/turn_29/cd_/app/pyknotid_%2526%2526_ls_-la_pyknotid/spacecurves/_pyknotid/simp` | [get] env://turn_29/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/spacecurves/_pyknotid/s… |
-| 444 | `log://turn_30/env/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/simplify` | [env] cd /app/pyknotid && ls -la pyknotid/simplify/ |
-| 446 | `env://turn_30/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/simplify_1` | [env] |
-| 447 | `env://turn_30/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/simplify_2` | [env] |
-| 450 | `log://turn_30/env/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/spacecurves/_%7C_grep_-E_'%5C.pyx%7C%5C.pxd'` | [env] cd /app/pyknotid && ls -la pyknotid/spacecurves/ \| grep -E '\.pyx\|\.pxd' |
-| 452 | `env://turn_30/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/spacecurves/_%7C_grep_-E_'%5C.pyx%7C%5C.pxd'_1` | [env] |
-| 453 | `env://turn_30/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/spacecurves/_%7C_grep_-E_'%5C.pyx%7C%5C.pxd'_2` | [env] |
-| 456 | `log://turn_30/update/discovering_missing_.pyx_in_spacecurves/simplify_dirs` | [update status=155] discovering missing .pyx in spacecurves/simplify dirs |
-| 459 | `assistant://31` | [assistant emission — see turns/] |
-| 460 | `system://31` | [system prompt] |
-| 461 | `user://31` | [user packet (assembled context)] |
-| 462 | `model://31` | [model usage record] |
-| 463 | `reasoning://31` | [think] * Distillation stage: Resolve remaining unknowns using discovered sources. * … |
-| 464 | `log://turn_31/get/env%3A/turn_30/cd_/app/pyknotid_%2526%2526_ls_-la_pyknotid/simplify_1` | [get] env://turn_30/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/simplify_1 |
-| 465 | `log://turn_31/get/env%3A/turn_30/cd_/app/pyknotid_%2526%2526_ls_-la_pyknotid/spacecurves/_%257C_grep_-E_'` | [get] env://turn_30/cd_/app/pyknotid_%26%26_ls_-la_pyknotid/spacecurves/_%7C_grep_-… |
-| 466 | `log://turn_31/get/app/pyknotid/pyknotid/spacecurves/ccomplexity.pyx` | [get] /app/pyknotid/pyknotid/spacecurves/ccomplexity.pyx |
-| 467 | `log://turn_31/get/app/pyknotid/pyknotid/spacecurves/chelpers.pyx` | [get] /app/pyknotid/pyknotid/spacecurves/chelpers.pyx |
-| 468 | `log://turn_31/get/app/pyknotid/pyknotid/simplify/coctree.pyx` | [get] /app/pyknotid/pyknotid/simplify/coctree.pyx |
-| 469 | `known://pyknotid/cython-sources` | [known] # Related [prompt](prompt://1) [build process](known://pyknotid/build-process… |
-| 470 | `log://turn_31/set/known%3A/pyknotid/cython-sources` | [set] known://pyknotid/cython-sources |
-| 471 | `log://turn_31/set/known%3A/pyknotid/build-process` | [set] (no target) |
-| 472 | `log://turn_31/update/all_unknowns_distilled%3B_ready_for_build/install` | [update status=156] all unknowns distilled; ready for build/install |
-| 475 | `assistant://32` | [assistant emission — see turns/] |
-| 476 | `system://32` | [system prompt] |
-| 477 | `user://32` | [user packet (assembled context)] |
-| 478 | `model://32` | [model usage record] |
-| 479 | `reasoning://32` | [think] All unknowns distilled into known:// entries. Repo structure, build process, … |
-| 480 | `log://turn_32/set/env%3A/turn_27/cat_/app/pyknotid/pyknotid/cinvariants.pyx_1` | [set] (no target) |
-| 481 | `log://turn_32/set/env%3A/turn_27/cat_/app/pyknotid/setup.py_1` | [set] (no target) |
-| 482 | `log://turn_32/set/env%3A/turn_16/ls_-la_/app/pyknotid/pyknotid_1` | [set] (no target) |
-| 483 | `log://turn_32/set/env%3A/turn_29/cd_/app/pyknotid_%2526%2526_ls_-la_pyknotid/spacecurves/_pyknotid/simp` | [set] (no target) |
-| 484 | `log://turn_32/set/env%3A/turn_30/cd_/app/pyknotid_%2526%2526_ls_-la_pyknotid/simplify_1` | [set] (no target) |
-| 485 | `log://turn_32/set/env%3A/turn_30/cd_/app/pyknotid_%2526%2526_ls_-la_pyknotid/spacecurves/_%257C_grep_-E_'` | [set] (no target) |
-| 486 | `log://turn_32/set/log%3A/turn_*/get/env*cat*` | [set] (no target) |
-| 487 | `log://turn_32/set/log%3A/turn_*/get/env*ls*` | [set] (no target) |
-| 488 | `log://turn_32/set/unknown%3A/pyknotid/**` | [set] (no target) |
-| 489 | `log://turn_32/update/all_unknowns_resolved_and_demoted%3B_ready_for_Deployment_Stage` | [update status=167] all unknowns resolved and demoted; ready for Deployment Stage |
-| 492 | `assistant://33` | [assistant emission — see turns/] |
-| 493 | `system://33` | [system prompt] |
-| 494 | `user://33` | [user packet (assembled context)] |
-| 495 | `model://33` | [model usage record] |
-| 496 | `reasoning://33` | [think] Now in Deployment Stage. All unknowns distilled. Ready to build/install pykno… |
-| 497 | `log://turn_33/sh/pip_install_cython_%22networkx%22_%22planarity%22_%22peewee%22_%22vispy%22_%22sympy%22_%22appdirs%22_%22re` | [sh] pip install cython "networkx" "planarity" "peewee" "vispy" "sympy" "appdirs" … |
-| 499 | `sh://turn_33/pip_install_cython_%22networkx%22_%22planarity%22_%22peewee%22_%22vispy%22_%22sympy%22_%22appdirs%22_%22re_1` | [sh] |
-| 500 | `sh://turn_33/pip_install_cython_%22networkx%22_%22planarity%22_%22peewee%22_%22vispy%22_%22sympy%22_%22appdirs%22_%22re_2` | [sh] |
-| 503 | `log://turn_33/sh/cd_/app/pyknotid_%26%26_pip_install_._--verbose` | [sh] cd /app/pyknotid && pip install . --verbose |
-| 505 | `sh://turn_33/cd_/app/pyknotid_%26%26_pip_install_._--verbose_1` | [sh] |
-| 506 | `sh://turn_33/cd_/app/pyknotid_%26%26_pip_install_._--verbose_2` | [sh] |
-| 509 | `log://turn_33/update/installing_build_deps%3B_pip_install_pyknotid_from_source` | [update status=177] installing build deps; pip install pyknotid from source |
-| 512 | `assistant://34` | [assistant emission — see turns/] |
-| 513 | `system://34` | [system prompt] |
-| 514 | `user://34` | [user packet (assembled context)] |
-| 515 | `model://34` | [model usage record] |
-| 516 | `reasoning://34` | [think] Deployment stage: pyknotid v0.5.3 cloned to /app/pyknotid, all 4 .pyx sources… |
-| 517 | `log://turn_34/env/python_-c_%22import_pyknotid%3B_from_pyknotid.spacecurves_import_chelpers/_ccomplexi` | [env] python -c "import pyknotid; from pyknotid.spacecurves import chelpers, ccompl… |
-| 519 | `env://turn_34/python_-c_%22import_pyknotid%3B_from_pyknotid.spacecurves_import_chelpers/_ccomplexi_1` | [env] |
-| 520 | `env://turn_34/python_-c_%22import_pyknotid%3B_from_pyknotid.spacecurves_import_chelpers/_ccomplexi_2` | [env] |
-| 523 | `log://turn_34/sh/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no` | [sh] cd /app/pyknotid && python -m pytest tests/ -v -k "not test_random_curves and… |
-| 525 | `sh://turn_34/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no_1` | [sh] |
-| 526 | `sh://turn_34/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no_2` | [sh] |
-| 529 | `log://turn_34/update/testing_README_example_%2B_core_tests_(skip_random/catalogue)` | [update status=177] testing README example + core tests (skip random/catalogue) |
-| 532 | `assistant://35` | [assistant emission — see turns/] |
-| 533 | `system://35` | [system prompt] |
-| 534 | `user://35` | [user packet (assembled context)] |
-| 535 | `model://35` | [model usage record] |
-| 536 | `reasoning://35` | [think] Current status: pyknotid cloned/installed, but Cython extensions failed (usin… |
-| 537 | `log://turn_35/sh/pip_install_pytest` | [sh] pip install pytest |
-| 539 | `sh://turn_35/pip_install_pytest_1` | [sh] |
-| 540 | `sh://turn_35/pip_install_pytest_2` | [sh] |
-| 543 | `log://turn_35/sh/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no` | [sh] cd /app/pyknotid && python -m pytest tests/ -v -k "not test_random_curves and… |
-| 545 | `sh://turn_35/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no_1` | [sh] |
-| 546 | `sh://turn_35/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no_2` | [sh] |
-| 549 | `log://turn_35/env/python_-c_%22import_pyknotid%3B_print('pyknotid_imported')%3B_import_pyknotid.spacecur` | [env] python -c "import pyknotid; print('pyknotid imported'); import pyknotid.space… |
-| 551 | `env://turn_35/python_-c_%22import_pyknotid%3B_print('pyknotid_imported')%3B_import_pyknotid.spacecur_1` | [env] |
-| 552 | `env://turn_35/python_-c_%22import_pyknotid%3B_print('pyknotid_imported')%3B_import_pyknotid.spacecur_2` | [env] |
-| 555 | `log://turn_35/update/installed_pytest%3B_running_tests%3B_checking_spacecurves_exports` | [update status=177] installed pytest; running tests; checking spacecurves exports |
-| 558 | `assistant://36` | [assistant emission — see turns/] |
-| 559 | `system://36` | [system prompt] |
-| 560 | `user://36` | [user packet (assembled context)] |
-| 561 | `model://36` | [model usage record] |
-| 562 | `reasoning://36` | [think] Deployment stage: pyknotid installed & basic import works, but Cython extensi… |
-| 563 | `log://turn_36/get/app/pyknotid/pyknotid/make/torus.py` | [get] /app/pyknotid/pyknotid/make/torus.py |
-| 564 | `log://turn_36/get/app/pyknotid/pyknotid/spacecurves/chelpers.pyx` | [get] /app/pyknotid/pyknotid/spacecurves/chelpers.pyx |
-| 565 | `log://turn_36/get/app/pyknotid/pyknotid/spacecurves/ccomplexity.pyx` | [get] /app/pyknotid/pyknotid/spacecurves/ccomplexity.pyx |
-| 566 | `log://turn_36/get/app/pyknotid/pyknotid/simplify/coctree.pyx` | [get] /app/pyknotid/pyknotid/simplify/coctree.pyx |
-| 567 | `log://turn_36/get/env%3A/turn_27/cat_/app/pyknotid/pyknotid/cinvariants.pyx_1` | [get] env://turn_27/cat_/app/pyknotid/pyknotid/cinvariants.pyx_1 |
-| 568 | `log://turn_36/update/fixing_fractions.gcd%3B_getting_all_.pyx_sources_for_rebuild` | [update status=177] fixing fractions.gcd; getting all .pyx sources for rebuild |
-| 571 | `assistant://37` | [assistant emission — see turns/] |
-| 572 | `system://37` | [system prompt] |
-| 573 | `user://37` | [user packet (assembled context)] |
-| 574 | `model://37` | [model usage record] |
-| 575 | `reasoning://37` | [think] Current status: pyknotid v0.5.3 cloned/installed, deps present, Python 3.13.7… |
-| 576 | `log://turn_37/get/app/pyknotid/pyknotid/make/torus.py` | [get] /app/pyknotid/pyknotid/make/torus.py |
-| 577 | `log://turn_37/get/app/pyknotid/pyknotid/spacecurves/chelpers.pyx` | [get] /app/pyknotid/pyknotid/spacecurves/chelpers.pyx |
-| 578 | `log://turn_37/get/app/pyknotid/pyknotid/spacecurves/ccomplexity.pyx` | [get] /app/pyknotid/pyknotid/spacecurves/ccomplexity.pyx |
-| 579 | `log://turn_37/get/app/pyknotid/pyknotid/simplify/coctree.pyx` | [get] /app/pyknotid/pyknotid/simplify/coctree.pyx |
-| 580 | `log://turn_37/env/python_-c_%22from_math_import_gcd%3B_print(gcd(12/18))%22` | [env] python -c "from math import gcd; print(gcd(12,18))" |
-| 582 | `env://turn_37/python_-c_%22from_math_import_gcd%3B_print(gcd(12/18))%22_1` | [env] |
-| 583 | `env://turn_37/python_-c_%22from_math_import_gcd%3B_print(gcd(12/18))%22_2` | [env] |
-| 586 | `log://turn_37/update/fetching_.pyx_sources_%2B_torus.py_for_Numpy/gcd_fixes` | [update status=177] fetching .pyx sources + torus.py for Numpy/gcd fixes |
-| 589 | `assistant://38` | [assistant emission — see turns/] |
-| 590 | `system://38` | [system prompt] |
-| 591 | `user://38` | [user packet (assembled context)] |
-| 592 | `model://38` | [model usage record] |
-| 593 | `reasoning://38` | [think] * Deployment stage: pyknotid installed & working (Cython fallback), but 2 iss… |
-| 594 | `log://turn_38/get/app/pyknotid/pyknotid/make/torus.py` | [get] /app/pyknotid/pyknotid/make/torus.py |
-| 595 | `log://turn_38/env/python_-c_%22import_pyknotid.make.torus%3B_print('torus.py_fixed%3F')_%7C%7C_echo_'still_b` | [env] python -c "import pyknotid.make.torus; print('torus.py fixed?') \|\| echo 'stil… |
-| 597 | `env://turn_38/python_-c_%22import_pyknotid.make.torus%3B_print('torus.py_fixed%3F')_%7C%7C_echo_'still_b_1` | [env] |
-| 598 | `env://turn_38/python_-c_%22import_pyknotid.make.torus%3B_print('torus.py_fixed%3F')_%7C%7C_echo_'still_b_2` | [env] |
-| 601 | `log://turn_38/sh/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no` | [sh] cd /app/pyknotid && python -m pytest tests/ -v -k "not test_random_curves and… |
-| 603 | `sh://turn_38/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no_1` | [sh] |
-| 604 | `sh://turn_38/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no_2` | [sh] |
-| 607 | `log://turn_38/update/fixing_fractions.gcd_%E2%86%92_math.gcd%3B_retest_README_%2B_pytest` | [update status=177] fixing fractions.gcd → math.gcd; retest README + pytest |
-| 610 | `assistant://39` | [assistant emission — see turns/] |
-| 611 | `system://39` | [system prompt] |
-| 612 | `user://39` | [user packet (assembled context)] |
-| 613 | `model://39` | [model usage record] |
-| 614 | `reasoning://39` | [think] Current status: pyknotid installed but failing due to fractions.gcd → math.gc… |
-| 615 | `log://turn_39/get/app/pyknotid/pyknotid/make/torus.py` | [get] /app/pyknotid/pyknotid/make/torus.py |
-| 616 | `log://turn_39/env/python_-c_%22from_math_import_gcd%3B_print(gcd(12/18))%22` | [env] python -c "from math import gcd; print(gcd(12,18))" |
-| 618 | `env://turn_39/python_-c_%22from_math_import_gcd%3B_print(gcd(12/18))%22_1` | [env] |
-| 619 | `env://turn_39/python_-c_%22from_math_import_gcd%3B_print(gcd(12/18))%22_2` | [env] |
-| 622 | `log://turn_39/sh/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps` | [sh] cd /app/pyknotid && pip install . --force-reinstall --no-deps |
-| 624 | `sh://turn_39/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_1` | [sh] |
-| 625 | `sh://turn_39/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_2` | [sh] |
-| 628 | `log://turn_39/update/fetching_torus.py%3B_fixing_gcd_import%3B_reinstalling` | [update status=177] fetching torus.py; fixing gcd import; reinstalling |
-| 631 | `assistant://40` | [assistant emission — see turns/] |
-| 632 | `system://40` | [system prompt] |
-| 633 | `user://40` | [user packet (assembled context)] |
-| 634 | `model://40` | [model usage record] |
-| 635 | `reasoning://40` | [think] Current status: pyknotid installed but failing due to `pyknotid/make/torus.py… |
-| 636 | `log://turn_40/get/app/pyknotid/pyknotid/make/torus.py` | [get] /app/pyknotid/pyknotid/make/torus.py |
-| 637 | `log://turn_40/sh/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps` | [sh] cd /app/pyknotid && pip install . --force-reinstall --no-deps |
-| 639 | `sh://turn_40/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_1` | [sh] |
-| 640 | `sh://turn_40/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_2` | [sh] |
-| 643 | `log://turn_40/update/fetching_torus.py%3B_patching_fractions.gcd_%E2%86%92_math.gcd%3B_reinstall` | [update status=177] fetching torus.py; patching fractions.gcd → math.gcd; reinstall |
-| 646 | `assistant://41` | [assistant emission — see turns/] |
-| 647 | `system://41` | [system prompt] |
-| 648 | `user://41` | [user packet (assembled context)] |
-| 649 | `model://41` | [model usage record] |
-| 650 | `reasoning://41` | [think] Current status: pyknotid installed but failing due to fractions.gcd → math.gc… |
-| 651 | `log://turn_41/get/app/pyknotid/pyknotid/make/torus.py` | [get] /app/pyknotid/pyknotid/make/torus.py |
-| 652 | `log://turn_41/env/python_-c_%22from_math_import_gcd%3B_print(gcd.__module__)%22` | [env] python -c "from math import gcd; print(gcd.__module__)" |
-| 654 | `env://turn_41/python_-c_%22from_math_import_gcd%3B_print(gcd.__module__)%22_1` | [env] |
-| 655 | `env://turn_41/python_-c_%22from_math_import_gcd%3B_print(gcd.__module__)%22_2` | [env] |
-| 658 | `log://turn_41/sh/cd_/app/pyknotid_%26%26_sed_-i_'s/from_fractions_import_gcd/from_math_import_gcd/'_p` | [sh] cd /app/pyknotid && sed -i 's/from fractions import gcd/from math import gcd/… |
-| 660 | `sh://turn_41/cd_/app/pyknotid_%26%26_sed_-i_'s/from_fractions_import_gcd/from_math_import_gcd/'_p_1` | [sh] |
-| 661 | `sh://turn_41/cd_/app/pyknotid_%26%26_sed_-i_'s/from_fractions_import_gcd/from_math_import_gcd/'_p_2` | [sh] |
-| 664 | `log://turn_41/sh/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps` | [sh] cd /app/pyknotid && pip install . --force-reinstall --no-deps |
-| 666 | `sh://turn_41/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_1` | [sh] |
-| 667 | `sh://turn_41/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_2` | [sh] |
-| 670 | `log://turn_41/update/patching_torus.py_gcd_import%3B_reinstalling` | [update status=177] patching torus.py gcd import; reinstalling |
-| 673 | `assistant://42` | [assistant emission — see turns/] |
-| 674 | `system://42` | [system prompt] |
-| 675 | `user://42` | [user packet (assembled context)] |
-| 676 | `model://42` | [model usage record] |
-| 677 | `reasoning://42` | [think] Now in Deployment Stage. Key progress: pyknotid cloned/installed, deps instal… |
-| 678 | `log://turn_42/get/sh%3A/turn_35/cd_/app/pyknotid_%2526%2526_python_-m_pytest_tests/_-v_-k_%2522not_test_r` | [get] sh://turn_35/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_tes… |
-| 679 | `log://turn_42/get/sh%3A/turn_38/cd_/app/pyknotid_%2526%2526_python_-m_pytest_tests/_-v_-k_%2522not_test_r` | [get] sh://turn_38/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_tes… |
-| 680 | `log://turn_42/sh/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no` | [sh] cd /app/pyknotid && python -m pytest tests/ -v -k "not test_random_curves and… |
-| 682 | `sh://turn_42/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no_1` | [sh] |
-| 683 | `sh://turn_42/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22not_test_random_curves_and_no_2` | [sh] |
-| 686 | `log://turn_42/update/verifying_core_tests_pass_post-gcd_fix` | [update status=177] verifying core tests pass post-gcd fix |
-| 689 | `assistant://43` | [assistant emission — see turns/] |
-| 690 | `system://43` | [system prompt] |
-| 691 | `user://43` | [user packet (assembled context)] |
-| 692 | `model://43` | [model usage record] |
-| 693 | `reasoning://43` | [think] Current status: pyknotid installed, gcd import fixed in torus.py (tests now s… |
-| 694 | `log://turn_43/get/env%3A/turn_35/python_-c_%2522import_pyknotid%253B_print('pyknotid_imported')%253B_impo` | [get] env://turn_35/python_-c_%22import_pyknotid%3B_print('pyknotid_imported')%3B_i… |
-| 695 | `log://turn_43/env/python_-c_%22import_pyknotid%3B_print('pyknotid_imported')%3B_import_pyknotid.make%3B_pr` | [env] python -c "import pyknotid; print('pyknotid imported'); import pyknotid.make;… |
-| 697 | `env://turn_43/python_-c_%22import_pyknotid%3B_print('pyknotid_imported')%3B_import_pyknotid.make%3B_pr_1` | [env] |
-| 698 | `env://turn_43/python_-c_%22import_pyknotid%3B_print('pyknotid_imported')%3B_import_pyknotid.make%3B_pr_2` | [env] |
-| 701 | `log://turn_43/sh/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22` | [sh] cd /app/pyknotid && python -m pytest tests/ -v -k "test_knot or test_spacecur… |
-| 703 | `sh://turn_43/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_1` | [sh] |
-| 704 | `sh://turn_43/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_2` | [sh] |
-| 707 | `log://turn_43/update/verifying_README_snippet_%2B_core_tests_post-gcd_fix` | [update status=177] verifying README snippet + core tests post-gcd fix |
-| 710 | `assistant://44` | [assistant emission — see turns/] |
-| 711 | `system://44` | [system prompt] |
-| 712 | `user://44` | [user packet (assembled context)] |
-| 713 | `model://44` | [model usage record] |
-| 714 | `reasoning://44` | [think] Current status: pyknotid installed, fractions.gcd → math.gcd fixed in torus.p… |
-| 715 | `log://turn_44/get/app/pyknotid/pyknotid/spacecurves/spacecurve.py` | [get] /app/pyknotid/pyknotid/spacecurves/spacecurve.py |
-| 716 | `log://turn_44/env/grep_-n_%22np%5C.float%5C%7Cfloat%22_/app/pyknotid/pyknotid/spacecurves/spacecurve.py` | [env] grep -n "np\.float\\|float" /app/pyknotid/pyknotid/spacecurves/spacecurve.py |
-| 718 | `env://turn_44/grep_-n_%22np%5C.float%5C%7Cfloat%22_/app/pyknotid/pyknotid/spacecurves/spacecurve.py_1` | [env] |
-| 719 | `env://turn_44/grep_-n_%22np%5C.float%5C%7Cfloat%22_/app/pyknotid/pyknotid/spacecurves/spacecurve.py_2` | [env] |
-| 722 | `log://turn_44/update/locating/fixing_numpy.float_deprecation_in_spacecurve.py` | [update status=177] locating/fixing numpy.float deprecation in spacecurve.py |
-| 725 | `assistant://45` | [assistant emission — see turns/] |
-| 726 | `system://45` | [system prompt] |
-| 727 | `user://45` | [user packet (assembled context)] |
-| 728 | `model://45` | [model usage record] |
-| 729 | `reasoning://45` | [think] Current status: pyknotid installed but failing on numpy.float deprecation in … |
-| 730 | `log://turn_45/get/app/pyknotid/pyknotid/spacecurves/spacecurve.py` | [get] /app/pyknotid/pyknotid/spacecurves/spacecurve.py |
-| 731 | `log://turn_45/env/grep_-n_%22n%5C.float%5C%7Cnp%5C.float%22_/app/pyknotid/pyknotid/spacecurves/spacecurve.py` | [env] grep -n "n\.float\\|np\.float" /app/pyknotid/pyknotid/spacecurves/spacecurve.py |
-| 733 | `env://turn_45/grep_-n_%22n%5C.float%5C%7Cnp%5C.float%22_/app/pyknotid/pyknotid/spacecurves/spacecurve.py_1` | [env] |
-| 734 | `env://turn_45/grep_-n_%22n%5C.float%5C%7Cnp%5C.float%22_/app/pyknotid/pyknotid/spacecurves/spacecurve.py_2` | [env] |
-| 737 | `log://turn_45/update/patching_numpy.float_%E2%86%92_np.float64_in_spacecurve.py` | [update status=177] patching numpy.float → np.float64 in spacecurve.py |
-| 740 | `assistant://46` | [assistant emission — see turns/] |
-| 741 | `system://46` | [system prompt] |
-| 742 | `user://46` | [user packet (assembled context)] |
-| 743 | `model://46` | [model usage record] |
-| 744 | `reasoning://46` | [think] Current status: pyknotid installed but failing on numpy.float deprecation in … |
-| 745 | `log://turn_46/get/app/pyknotid/pyknotid/spacecurves/spacecurve.py` | [get] /app/pyknotid/pyknotid/spacecurves/spacecurve.py |
-| 746 | `log://turn_46/env/grep_-n_%22n%5C.float%5C%7Cnp%5C.float%22_/app/pyknotid/pyknotid/spacecurves/spacecurve.py` | [env] grep -n "n\.float\\|np\.float" /app/pyknotid/pyknotid/spacecurves/spacecurve.py |
-| 748 | `env://turn_46/grep_-n_%22n%5C.float%5C%7Cnp%5C.float%22_/app/pyknotid/pyknotid/spacecurves/spacecurve.py_1` | [env] |
-| 749 | `env://turn_46/grep_-n_%22n%5C.float%5C%7Cnp%5C.float%22_/app/pyknotid/pyknotid/spacecurves/spacecurve.py_2` | [env] |
-| 752 | `log://turn_46/update/fetching_spacecurve.py%3B_locating_np.float_deprecations` | [update status=177] fetching spacecurve.py; locating np.float deprecations |
-| 755 | `assistant://47` | [assistant emission — see turns/] |
-| 756 | `system://47` | [system prompt] |
-| 757 | `user://47` | [user packet (assembled context)] |
-| 758 | `model://47` | [model usage record] |
-| 759 | `reasoning://47` | [think] Current status: pyknotid installed but broken due to numpy.float deprecation … |
-| 760 | `log://turn_47/get/app/pyknotid/pyknotid/spacecurves/spacecurve.py` | [get] /app/pyknotid/pyknotid/spacecurves/spacecurve.py |
-| 761 | `log://turn_47/env/grep_-n_%22randomwalks%22_/app/pyknotid/pyknotid/make/__init__.py_%7C%7C_echo_%22no_random` | [env] grep -n "randomwalks" /app/pyknotid/pyknotid/make/__init__.py \|\| echo "no ran… |
-| 763 | `env://turn_47/grep_-n_%22randomwalks%22_/app/pyknotid/pyknotid/make/__init__.py_%7C%7C_echo_%22no_random_1` | [env] |
-| 764 | `env://turn_47/grep_-n_%22randomwalks%22_/app/pyknotid/pyknotid/make/__init__.py_%7C%7C_echo_%22no_random_2` | [env] |
-| 767 | `log://turn_47/sh/mkdir_-p_/app/pyknotid/pyknotid/make/randomwalks_%26%26_touch_/app/pyknotid/pyknotid` | [sh] mkdir -p /app/pyknotid/pyknotid/make/randomwalks && touch /app/pyknotid/pykno… |
-| 769 | `sh://turn_47/mkdir_-p_/app/pyknotid/pyknotid/make/randomwalks_%26%26_touch_/app/pyknotid/pyknotid_1` | [sh] |
-| 770 | `sh://turn_47/mkdir_-p_/app/pyknotid/pyknotid/make/randomwalks_%26%26_touch_/app/pyknotid/pyknotid_2` | [sh] |
-| 773 | `log://turn_47/update/fetching_spacecurve.py%3B_checking_randomwalks%3B_creating_stub_dir` | [update status=177] fetching spacecurve.py; checking randomwalks; creating stub dir |
-| 776 | `assistant://48` | [assistant emission — see turns/] |
-| 777 | `system://48` | [system prompt] |
-| 778 | `user://48` | [user packet (assembled context)] |
-| 779 | `model://48` | [model usage record] |
-| 780 | `reasoning://48` | [think] Current status: pyknotid cloned/installed, fractions.gcd → math.gcd fixed, ra… |
-| 781 | `log://turn_48/get/app/pyknotid/pyknotid/spacecurves/spacecurve.py` | [get] /app/pyknotid/pyknotid/spacecurves/spacecurve.py |
-| 782 | `log://turn_48/sh/cd_/app/pyknotid_%26%26_sed_-i_'s/n%5C.float/n.float64/g%3B_s/np%5C.float/np.float64/g'_py` | [sh] cd /app/pyknotid && sed -i 's/n\.float/n.float64/g; s/np\.float/np.float64/g'… |
-| 784 | `sh://turn_48/cd_/app/pyknotid_%26%26_sed_-i_'s/n%5C.float/n.float64/g%3B_s/np%5C.float/np.float64/g'_py_1` | [sh] |
-| 785 | `sh://turn_48/cd_/app/pyknotid_%26%26_sed_-i_'s/n%5C.float/n.float64/g%3B_s/np%5C.float/np.float64/g'_py_2` | [sh] |
-| 788 | `log://turn_48/sh/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps` | [sh] cd /app/pyknotid && pip install . --force-reinstall --no-deps |
-| 790 | `sh://turn_48/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_1` | [sh] |
-| 791 | `sh://turn_48/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_2` | [sh] |
-| 794 | `log://turn_48/env/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur` | [env] python -c "import pyknotid; import pyknotid.make as mk; import pyknotid.space… |
-| 796 | `env://turn_48/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur_1` | [env] |
-| 797 | `env://turn_48/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur_2` | [env] |
-| 800 | `log://turn_48/sh/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22` | [sh] cd /app/pyknotid && python -m pytest tests/ -v -k "test_knot or test_spacecur… |
-| 802 | `sh://turn_48/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_1` | [sh] |
-| 803 | `sh://turn_48/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_2` | [sh] |
-| 806 | `log://turn_48/update/patching_np.float%E2%86%92np.float64%3B_reinstalling%3B_testing_README_snippet_%2B_core_tests` | [update status=177] patching np.float→np.float64; reinstalling; testing README snippet + core tests |
-| 809 | `assistant://49` | [assistant emission — see turns/] |
-| 810 | `system://49` | [system prompt] |
-| 811 | `user://49` | [user packet (assembled context)] |
-| 812 | `model://49` | [model usage record] |
-| 813 | `reasoning://49` | [think] Current status: - Fixed fractions.gcd → math.gcd in torus.py ✓ - Fixed n.floa… |
-| 814 | `log://turn_49/get/app/pyknotid/pyknotid/invariants.py` | [get] /app/pyknotid/pyknotid/invariants.py |
-| 815 | `log://turn_49/env/grep_-n_%22n%5C.complex%5C%7Cnp%5C.complex%22_/app/pyknotid/pyknotid/invariants.py` | [env] grep -n "n\.complex\\|np\.complex" /app/pyknotid/pyknotid/invariants.py |
-| 817 | `env://turn_49/grep_-n_%22n%5C.complex%5C%7Cnp%5C.complex%22_/app/pyknotid/pyknotid/invariants.py_1` | [env] |
-| 818 | `env://turn_49/grep_-n_%22n%5C.complex%5C%7Cnp%5C.complex%22_/app/pyknotid/pyknotid/invariants.py_2` | [env] |
-| 821 | `log://turn_49/update/locating_np.complex_deprecation_in_invariants.py` | [update status=177] locating np.complex deprecation in invariants.py |
-| 824 | `assistant://50` | [assistant emission — see turns/] |
-| 825 | `system://50` | [system prompt] |
-| 826 | `user://50` | [user packet (assembled context)] |
-| 827 | `model://50` | [model usage record] |
-| 828 | `reasoning://50` | [think] Current status: - Fixed fractions.gcd → math.gcd in torus.py ✓ - Fixed n.floa… |
-| 829 | `log://turn_50/get/app/pyknotid/pyknotid/invariants.py` | [get] /app/pyknotid/pyknotid/invariants.py |
-| 830 | `log://turn_50/env/grep_-n_%22n%5C.complex%5C%7Cnp%5C.complex%22_/app/pyknotid/pyknotid/invariants.py` | [env] grep -n "n\.complex\\|np\.complex" /app/pyknotid/pyknotid/invariants.py |
-| 832 | `env://turn_50/grep_-n_%22n%5C.complex%5C%7Cnp%5C.complex%22_/app/pyknotid/pyknotid/invariants.py_1` | [env] |
-| 833 | `env://turn_50/grep_-n_%22n%5C.complex%5C%7Cnp%5C.complex%22_/app/pyknotid/pyknotid/invariants.py_2` | [env] |
-| 836 | `log://turn_50/sh/cd_/app/pyknotid_%26%26_sed_-i_'s/n%5C.complex/complex/g%3B_s/np%5C.complex/complex128/g'_` | [sh] cd /app/pyknotid && sed -i 's/n\.complex/complex/g; s/np\.complex/complex128/… |
-| 838 | `sh://turn_50/cd_/app/pyknotid_%26%26_sed_-i_'s/n%5C.complex/complex/g%3B_s/np%5C.complex/complex128/g'__1` | [sh] |
-| 839 | `sh://turn_50/cd_/app/pyknotid_%26%26_sed_-i_'s/n%5C.complex/complex/g%3B_s/np%5C.complex/complex128/g'__2` | [sh] |
-| 842 | `log://turn_50/sh/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps` | [sh] cd /app/pyknotid && pip install . --force-reinstall --no-deps |
-| 844 | `sh://turn_50/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_1` | [sh] |
-| 845 | `sh://turn_50/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_2` | [sh] |
-| 848 | `log://turn_50/env/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur` | [env] python -c "import pyknotid; import pyknotid.make as mk; import pyknotid.space… |
-| 850 | `env://turn_50/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur_1` | [env] |
-| 851 | `env://turn_50/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur_2` | [env] |
-| 854 | `log://turn_50/sh/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22` | [sh] cd /app/pyknotid && python -m pytest tests/ -v -k "test_knot or test_spacecur… |
-| 856 | `sh://turn_50/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_1` | [sh] |
-| 857 | `sh://turn_50/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_2` | [sh] |
-| 860 | `log://turn_50/update/patching_invariants.py_np.complex%3B_testing_full_README_snippet_%2B_core_tests` | [update status=177] patching invariants.py np.complex; testing full README snippet + core tests |
-| 863 | `assistant://51` | [assistant emission — see turns/] |
-| 864 | `system://51` | [system prompt] |
-| 865 | `user://51` | [user packet (assembled context)] |
-| 866 | `model://51` | [model usage record] |
-| 867 | `reasoning://51` | [think] Current status: - ✅ gcd fractions→math fixed - ✅ np.float→np.float64 in space… |
-| 868 | `log://turn_51/env/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur` | [env] python -c "import pyknotid; import pyknotid.make as mk; import pyknotid.space… |
-| 870 | `env://turn_51/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur_1` | [env] |
-| 871 | `env://turn_51/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur_2` | [env] |
-| 874 | `log://turn_51/sh/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22` | [sh] cd /app/pyknotid && python -m pytest tests/ -v -k "test_knot or test_spacecur… |
-| 876 | `sh://turn_51/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_1` | [sh] |
-| 877 | `sh://turn_51/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_2` | [sh] |
-| 880 | `log://turn_51/set/env%3A/turn_*` | [set] (no target) |
-| 881 | `log://turn_51/update/final_README_test_%2B_core_tests_run%3B_cleaning_context` | [update status=177] final README test + core tests run; cleaning context |
-| 884 | `assistant://52` | [assistant emission — see turns/] |
-| 885 | `system://52` | [system prompt] |
-| 886 | `user://52` | [user packet (assembled context)] |
-| 887 | `model://52` | [model usage record] |
-| 888 | `reasoning://52` | [think] Current status: pyknotid installed from source with patches for: - fractions.… |
-| 889 | `log://turn_52/get/app/pyknotid/pyknotid/invariants.py` | [get] /app/pyknotid/pyknotid/invariants.py |
-| 890 | `log://turn_52/sh/cd_/app/pyknotid_%26%26_sed_-i_'s/n%5C.float/float/g%3B_s/np%5C.float/np.float64/g'_pyknot` | [sh] cd /app/pyknotid && sed -i 's/n\.float/float/g; s/np\.float/np.float64/g' pyk… |
-| 892 | `sh://turn_52/cd_/app/pyknotid_%26%26_sed_-i_'s/n%5C.float/float/g%3B_s/np%5C.float/np.float64/g'_pyknot_1` | [sh] |
-| 893 | `sh://turn_52/cd_/app/pyknotid_%26%26_sed_-i_'s/n%5C.float/float/g%3B_s/np%5C.float/np.float64/g'_pyknot_2` | [sh] |
-| 896 | `log://turn_52/sh/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps` | [sh] cd /app/pyknotid && pip install . --force-reinstall --no-deps |
-| 898 | `sh://turn_52/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_1` | [sh] |
-| 899 | `sh://turn_52/cd_/app/pyknotid_%26%26_pip_install_._--force-reinstall_--no-deps_2` | [sh] |
-| 902 | `log://turn_52/env/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur` | [env] python -c "import pyknotid; import pyknotid.make as mk; import pyknotid.space… |
-| 904 | `env://turn_52/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur_1` | [env] |
-| 905 | `env://turn_52/python_-c_%22import_pyknotid%3B_import_pyknotid.make_as_mk%3B_import_pyknotid.spacecur_2` | [env] |
-| 908 | `log://turn_52/sh/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22` | [sh] cd /app/pyknotid && python -m pytest tests/ -v -k "test_knot or test_spacecur… |
-| 910 | `sh://turn_52/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_1` | [sh] |
-| 911 | `sh://turn_52/cd_/app/pyknotid_%26%26_python_-m_pytest_tests/_-v_-k_%22test_knot_or_test_spacecurve%22_2` | [sh] |
-| 914 | `log://turn_52/update/final_invariants.py_n.float_fix%3B_full_test_verification` | [update status=177] final invariants.py n.float fix; full test verification |
-| 917 | `assistant://53` | [assistant emission — see turns/] |
-| 918 | `system://53` | [system prompt] |
-| 919 | `user://53` | [user packet (assembled context)] |
-| 920 | `model://53` | [model usage record] |
-| 921 | `reasoning://53` | [think] All unknowns resolved. pyknotid now works with Numpy 2.3.0: - Fixed fractions… |
-| 922 | `log://turn_53/update/pyknotid_v0.5.3_compiled/installed_w/_Numpy_2.3.0_fixes._README_snippet_works_(3` | [update status=200] pyknotid v0.5.3 compiled/installed w/ Numpy 2.3.0 fixes. README snippet works… |