@porast1/mcp-cognitive 1.0.0

package/LICENSE

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+MIT License
+
+Copyright (c) 2026
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

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+# @osobisty/mcp-cognitive
+
+Universal MCP server for AI knowledge persistence with SQLite fallback and Weaviate hybrid search.
+
+## Features
+
+- 🧠 **SQLite fallback** — Works offline, no infrastructure required
+- 🔍 **Weaviate hybrid search** — BM25 keyword + vector embeddings (optional)
+- 🏢 **Multi-tenancy** — Isolate data per project via `WEAVIATE_TENANT` env var
+- 🛠️ **CLI tools** — Migration, sync, audit, verification
+- 📚 **4 MCP Tools** — `cognitive_recall`, `cognitive_store`, `cognitive_verify`, `cognitive_audit`
+
+## Installation
+
+```bash
+npm install @osobisty/mcp-cognitive
+# or
+pnpm add @osobisty/mcp-cognitive
+```
+
+## Configuration
+
+Add to `.vscode/mcp.json`:
+
+```jsonc
+{
+  "servers": {
+    "cognitive": {
+      "command": "node",
+      "args": ["./node_modules/@osobisty/mcp-cognitive/dist/server.js"],
+      "env": {
+        "COGNITIVE_DB_PATH": ".cognitive/facts.sqlite",
+        "WORKSPACE_ROOT": "${workspaceFolder}",
+        "USE_WEAVIATE": "true",
+        "WEAVIATE_URL": "localhost:8200",
+        "WEAVIATE_TENANT": "myproject"  // 🔑 Project isolation
+      }
+    }
+  }
+}
+```
+
+> **Note:** Works with pnpm, npm, yarn - `node_modules/` path is standard across package managers.
+
+## Environment Variables
+
+| Variable          | Default                     | Description                       |
+| ----------------- | --------------------------- | --------------------------------- |
+| COGNITIVE_DB_PATH | `.cognitive/facts.sqlite`   | SQLite database location          |
+| WORKSPACE_ROOT    | `process.cwd()`             | Project root (for relative paths) |
+| USE_WEAVIATE      | `false`                     | Enable Weaviate hybrid search     |
+| WEAVIATE_URL      | `localhost:8200`            | Weaviate connection URL           |
+| WEAVIATE_TENANT   | `default`                   | Tenant name for multi-tenancy     |
+
+## CLI Tools
+
+```bash
+# Migrate SQLite → Weaviate
+npx mcp-cognitive-migrate
+
+# Sync markdown docs to knowledge base
+npx mcp-cognitive-sync
+
+# Audit stale facts (broken citations)
+npx mcp-cognitive-audit
+
+# Verify citations exist
+npx mcp-cognitive-verify
+
+# Detect stale facts
+npx mcp-cognitive-stale
+```
+
+## Multi-Tenancy
+
+Use `WEAVIATE_TENANT` to isolate data between projects:
+
+```jsonc
+// Project A (.vscode/mcp.json)
+"WEAVIATE_TENANT": "project-a"
+
+// Project B (.vscode/mcp.json)
+"WEAVIATE_TENANT": "project-b"
+```
+
+Both projects share the same Weaviate instance (~1GB RAM) but have isolated data.
+
+## MCP Tools
+
+### `cognitive_recall`
+
+Search facts with filters.
+
+**Parameters:**
+- `query` (string): Search query
+- `module` (optional): Filter by module
+- `types` (optional): Filter by classification
+- `minConfidence` (optional): Minimum confidence score
+
+**Returns:** Array of `Fact` objects with metadata.
+
+### `cognitive_store`
+
+Store new fact.
+
+**Parameters:**
+- `fact` (string): Knowledge statement
+- `module` (string): Module name
+- `classification` (string): `invariant | policy | convention | observation`
+- `citations` (array): File:line references
+- `tags` (array): Keywords
+
+**Returns:** Created fact with ID.
+
+### `cognitive_verify`
+
+Verify citations exist.
+
+**Parameters:**
+- `factId` (string): Fact to verify
+
+**Returns:** Verification status + broken citations.
+
+### `cognitive_audit`
+
+Audit all facts for stale citations.
+
+**Returns:** Summary + list of stale facts.
+
+## Architecture
+
+```
+CognitiveStore (interface)
+├── SqliteStore (fallback)
+└── WeaviateStore (hybrid search)
+    ├── BM25 keyword search
+    └── Vector embeddings (text2vec-transformers)
+```
+
+## License
+
+MIT

package/dist/adapters/sqlite.adapter.d.ts

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+import type { CognitiveStore } from '../ports/cognitive-store.port.js';
+import type { AuditReport, Fact, FactInput, RecallQuery, RecallResult, VerifyResult } from '../types.js';
+export declare class SqliteStore implements CognitiveStore {
+    private db;
+    private readonly dbPath;
+    private readonly workspaceRoot;
+    private constructor();
+    static create(dbPath: string, workspaceRoot: string): Promise<SqliteStore>;
+    private initSchema;
+    private persist;
+    private query;
+    private queryOne;
+    store(input: FactInput): Promise<Fact>;
+    update(id: string, patch: Partial<FactInput>): Promise<Fact>;
+    archive(id: string, _reason: string): Promise<void>;
+    recall(query: RecallQuery): Promise<RecallResult>;
+    verify(factId: string): Promise<VerifyResult>;
+    verifyAll(): Promise<VerifyResult[]>;
+    audit(): Promise<AuditReport>;
+    decayCheck(): Promise<Fact[]>;
+    migrate(facts: readonly FactInput[]): Promise<void>;
+    exportAll(): Promise<Fact[]>;
+    count(): Promise<number>;
+    private findDuplicateCandidates;
+    private wordOverlap;
+    /** Close the database connection. */
+    close(): void;
+}
+//# sourceMappingURL=sqlite.adapter.d.ts.map

package/dist/adapters/sqlite.adapter.d.ts.map

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package/dist/adapters/sqlite.adapter.js

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+import initSqlJs from 'sql.js';
+import { randomUUID } from 'node:crypto';
+import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'node:fs';
+import { dirname } from 'node:path';
+import { checkCitations, overallCitationStatus } from '../utils/citation-checker.js';
+import { checkDecayBatch } from '../utils/decay.js';
+// ─── Row ↔ Fact mappers ───────────────────────────────────────────────────
+function rowToFact(row) {
+    return {
+        id: row.id,
+        fact: row.fact,
+        type: row.type,
+        module: row.module,
+        confidence: row.confidence,
+        citations: JSON.parse(row.citations),
+        tags: JSON.parse(row.tags),
+        epoch: row.epoch,
+        createdAt: row.created_at,
+        updatedAt: row.updated_at,
+        lastRecalled: row.last_recalled,
+        recallCount: row.recall_count,
+        supersedes: row.supersedes,
+        status: row.status,
+    };
+}
+// ─── SqliteStore ──────────────────────────────────────────────────────────
+export class SqliteStore {
+    db;
+    dbPath;
+    workspaceRoot;
+    constructor(db, dbPath, workspaceRoot) {
+        this.db = db;
+        this.dbPath = dbPath;
+        this.workspaceRoot = workspaceRoot;
+    }
+    static async create(dbPath, workspaceRoot) {
+        // Ensure directory exists
+        mkdirSync(dirname(dbPath), { recursive: true });
+        const SQL = await initSqlJs();
+        let db;
+        // Load existing DB or create new
+        if (existsSync(dbPath)) {
+            const buffer = readFileSync(dbPath);
+            db = new SQL.Database(buffer);
+        }
+        else {
+            db = new SQL.Database();
+        }
+        const store = new SqliteStore(db, dbPath, workspaceRoot);
+        store.initSchema();
+        return store;
+    }
+    initSchema() {
+        this.db.run(`
+      CREATE TABLE IF NOT EXISTS facts (
+        id            TEXT PRIMARY KEY,
+        fact          TEXT NOT NULL,
+        type          TEXT NOT NULL CHECK(type IN ('invariant','policy','convention','observation','ephemeral')),
+        module        TEXT NOT NULL,
+        confidence    REAL NOT NULL DEFAULT 0.8,
+        citations     TEXT NOT NULL DEFAULT '[]',
+        tags          TEXT NOT NULL DEFAULT '[]',
+        epoch         INTEGER NOT NULL DEFAULT 3,
+        created_at    TEXT NOT NULL,
+        updated_at    TEXT NOT NULL,
+        last_recalled TEXT,
+        recall_count  INTEGER NOT NULL DEFAULT 0,
+        supersedes    TEXT,
+        status        TEXT NOT NULL DEFAULT 'active' CHECK(status IN ('active','stale','archived'))
+      );
+    `);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_facts_module ON facts(module);`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_facts_type ON facts(type);`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_facts_status ON facts(status);`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_facts_tags ON facts(tags);`);
+        this.persist();
+    }
+    persist() {
+        const data = this.db.export();
+        writeFileSync(this.dbPath, data);
+    }
+    query(sql, params = []) {
+        const results = this.db.exec(sql, params);
+        if (results.length === 0)
+            return [];
+        const result = results[0];
+        const rows = [];
+        for (const values of result.values) {
+            const row = {};
+            for (let i = 0; i < result.columns.length; i++) {
+                row[result.columns[i]] = values[i];
+            }
+            rows.push(row);
+        }
+        return rows;
+    }
+    queryOne(sql, params = []) {
+        const rows = this.query(sql, params);
+        return rows[0];
+    }
+    // ─── CRUD ─────────────────────────────────────────────────────────────
+    async store(input) {
+        const now = new Date().toISOString();
+        const id = randomUUID();
+        this.db.run(`INSERT INTO facts (id, fact, type, module, confidence, citations, tags, epoch, created_at, updated_at, supersedes, status)
+       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, 'active')`, [
+            id,
+            input.fact,
+            input.type,
+            input.module,
+            input.confidence ?? 0.8,
+            JSON.stringify(input.citations ?? []),
+            JSON.stringify(input.tags ?? []),
+            input.epoch ?? 3,
+            now,
+            now,
+            input.supersedes ?? null,
+        ]);
+        // If supersedes, archive the old fact
+        if (input.supersedes) {
+            this.db.run(`UPDATE facts SET status = 'archived', updated_at = ? WHERE id = ?`, [
+                now,
+                input.supersedes,
+            ]);
+        }
+        this.persist();
+        const row = this.queryOne('SELECT * FROM facts WHERE id = ?', [id]);
+        if (!row)
+            throw new Error('Failed to store fact');
+        return rowToFact(row);
+    }
+    async update(id, patch) {
+        const existing = this.queryOne('SELECT * FROM facts WHERE id = ?', [id]);
+        if (!existing) {
+            throw new Error(`Fact not found: ${id}`);
+        }
+        const now = new Date().toISOString();
+        const updates = ['updated_at = ?'];
+        const values = [now];
+        if (patch.fact !== undefined) {
+            updates.push('fact = ?');
+            values.push(patch.fact);
+        }
+        if (patch.type !== undefined) {
+            updates.push('type = ?');
+            values.push(patch.type);
+        }
+        if (patch.module !== undefined) {
+            updates.push('module = ?');
+            values.push(patch.module);
+        }
+        if (patch.confidence !== undefined) {
+            updates.push('confidence = ?');
+            values.push(patch.confidence);
+        }
+        if (patch.citations !== undefined) {
+            updates.push('citations = ?');
+            values.push(JSON.stringify(patch.citations));
+        }
+        if (patch.tags !== undefined) {
+            updates.push('tags = ?');
+            values.push(JSON.stringify(patch.tags));
+        }
+        if (patch.epoch !== undefined) {
+            updates.push('epoch = ?');
+            values.push(patch.epoch);
+        }
+        values.push(id);
+        this.db.run(`UPDATE facts SET ${updates.join(', ')} WHERE id = ?`, values);
+        this.persist();
+        const row = this.queryOne('SELECT * FROM facts WHERE id = ?', [id]);
+        if (!row)
+            throw new Error('Failed to update fact');
+        return rowToFact(row);
+    }
+    async archive(id, _reason) {
+        const now = new Date().toISOString();
+        const existing = this.queryOne('SELECT * FROM facts WHERE id = ?', [id]);
+        if (!existing) {
+            throw new Error(`Fact not found: ${id}`);
+        }
+        this.db.run(`UPDATE facts SET status = 'archived', updated_at = ? WHERE id = ?`, [now, id]);
+        this.persist();
+    }
+    // ─── Search ─────────────────────────────────────────────────────────────
+    async recall(query) {
+        const start = performance.now();
+        // Build WHERE conditions
+        const conditions = ["status = 'active'"];
+        const params = [];
+        // Keyword search: split query into words, match against fact + tags
+        const keywords = query.query
+            .toLowerCase()
+            .split(/\s+/)
+            .filter((w) => w.length > 2);
+        if (keywords.length > 0) {
+            const keywordConditions = keywords.map(() => "(LOWER(fact) LIKE ? OR LOWER(tags) LIKE ?)");
+            conditions.push(`(${keywordConditions.join(' OR ')})`);
+            for (const kw of keywords) {
+                params.push(`%${kw}%`, `%${kw}%`);
+            }
+        }
+        // Module filter
+        if (query.module !== undefined) {
+            conditions.push('module = ?');
+            params.push(query.module);
+        }
+        // Type filter
+        if (query.types !== undefined && query.types.length > 0) {
+            const placeholders = query.types.map(() => '?').join(', ');
+            conditions.push(`type IN (${placeholders})`);
+            params.push(...query.types);
+        }
+        // Tag filter (AND — all tags must match)
+        if (query.tags !== undefined && query.tags.length > 0) {
+            for (const tag of query.tags) {
+                conditions.push('LOWER(tags) LIKE ?');
+                params.push(`%"${tag.toLowerCase()}"%`);
+            }
+        }
+        // Minimum confidence
+        if (query.minConfidence !== undefined) {
+            conditions.push('confidence >= ?');
+            params.push(query.minConfidence);
+        }
+        const whereClause = conditions.join(' AND ');
+        const limit = query.limit ?? 10;
+        // Count total matches
+        const countResult = this.query(`SELECT COUNT(*) as cnt FROM facts WHERE ${whereClause}`, params);
+        const totalMatches = countResult[0]?.cnt ?? 0;
+        // Fetch ranked results
+        const rows = this.query(`SELECT * FROM facts
+       WHERE ${whereClause}
+       ORDER BY confidence DESC, updated_at DESC
+       LIMIT ?`, [...params, limit]);
+        // Re-rank by keyword match count
+        const rankedFacts = rows
+            .map((row) => {
+            const factLower = row.fact.toLowerCase();
+            const tagsLower = row.tags.toLowerCase();
+            let matchCount = 0;
+            for (const kw of keywords) {
+                if (factLower.includes(kw))
+                    matchCount++;
+                if (tagsLower.includes(kw))
+                    matchCount++;
+            }
+            return { row, matchCount };
+        })
+            .sort((a, b) => {
+            if (b.matchCount !== a.matchCount)
+                return b.matchCount - a.matchCount;
+            if (b.row.confidence !== a.row.confidence)
+                return b.row.confidence - a.row.confidence;
+            return b.row.updated_at.localeCompare(a.row.updated_at);
+        })
+            .map(({ row }) => rowToFact(row));
+        // Side effect: update recall metadata
+        const now = new Date().toISOString();
+        for (const fact of rankedFacts) {
+            this.db.run(`UPDATE facts SET last_recalled = ?, recall_count = recall_count + 1 WHERE id = ?`, [now, fact.id]);
+        }
+        this.persist();
+        const queryTimeMs = Math.round(performance.now() - start);
+        return {
+            facts: rankedFacts,
+            totalMatches,
+            queryTimeMs,
+        };
+    }
+    // ─── Maintenance ────────────────────────────────────────────────────────
+    async verify(factId) {
+        const row = this.queryOne('SELECT * FROM facts WHERE id = ?', [factId]);
+        if (!row) {
+            throw new Error(`Fact not found: ${factId}`);
+        }
+        const fact = rowToFact(row);
+        const results = checkCitations(fact.citations, this.workspaceRoot);
+        const overall = overallCitationStatus(results);
+        return {
+            factId: fact.id,
+            factSnippet: fact.fact.substring(0, 100),
+            citations: results.map((r) => ({
+                citation: r.citation,
+                status: r.status,
+                ...(r.detail !== undefined ? { detail: r.detail } : {}),
+            })),
+            overallStatus: overall,
+        };
+    }
+    async verifyAll() {
+        const rows = this.query("SELECT * FROM facts WHERE status = 'active'");
+        const results = [];
+        for (const row of rows) {
+            const fact = rowToFact(row);
+            if (fact.citations.length === 0)
+                continue;
+            const citResults = checkCitations(fact.citations, this.workspaceRoot);
+            const overall = overallCitationStatus(citResults);
+            results.push({
+                factId: fact.id,
+                factSnippet: fact.fact.substring(0, 100),
+                citations: citResults.map((r) => ({
+                    citation: r.citation,
+                    status: r.status,
+                    ...(r.detail !== undefined ? { detail: r.detail } : {}),
+                })),
+                overallStatus: overall,
+            });
+        }
+        return results;
+    }
+    async audit() {
+        const allRows = this.query('SELECT * FROM facts');
+        const allFacts = allRows.map(rowToFact);
+        const activeFacts = allFacts.filter((f) => f.status === 'active');
+        // By status
+        const byStatus = { active: 0, stale: 0, archived: 0 };
+        for (const f of allFacts) {
+            byStatus[f.status]++;
+        }
+        // By type
+        const byType = {
+            invariant: 0,
+            policy: 0,
+            convention: 0,
+            observation: 0,
+            ephemeral: 0,
+        };
+        for (const f of allFacts) {
+            byType[f.type]++;
+        }
+        // By module
+        const byModule = {};
+        for (const f of allFacts) {
+            byModule[f.module] = (byModule[f.module] ?? 0) + 1;
+        }
+        // Stale facts via decay check
+        const decayActions = checkDecayBatch(activeFacts);
+        const staleFacts = decayActions
+            .filter((a) => a.action === 'mark-stale')
+            .map((a) => a.fact);
+        // Broken citations
+        const verifications = await this.verifyAll();
+        const brokenCitations = verifications.filter((v) => v.overallStatus === 'broken');
+        // Simple duplicate detection: facts with high word overlap
+        const duplicateCandidates = this.findDuplicateCandidates(activeFacts);
+        return {
+            totalFacts: allFacts.length,
+            byStatus,
+            byType,
+            byModule,
+            staleFacts,
+            brokenCitations,
+            duplicateCandidates,
+            generatedAt: new Date().toISOString(),
+        };
+    }
+    // ─── Lifecycle ──────────────────────────────────────────────────────────
+    async decayCheck() {
+        const rows = this.query("SELECT * FROM facts WHERE status IN ('active', 'stale')");
+        const facts = rows.map(rowToFact);
+        const actions = checkDecayBatch(facts);
+        const now = new Date().toISOString();
+        for (const action of actions) {
+            if (action.action === 'mark-stale') {
+                this.db.run(`UPDATE facts SET status = 'stale', updated_at = ? WHERE id = ?`, [
+                    now,
+                    action.fact.id,
+                ]);
+            }
+            else {
+                this.db.run(`UPDATE facts SET status = 'archived', updated_at = ? WHERE id = ?`, [
+                    now,
+                    action.fact.id,
+                ]);
+            }
+        }
+        this.persist();
+        return actions.map((a) => a.fact);
+    }
+    async migrate(facts) {
+        const now = new Date().toISOString();
+        for (const input of facts) {
+            this.db.run(`INSERT OR IGNORE INTO facts (id, fact, type, module, confidence, citations, tags, epoch, created_at, updated_at, supersedes, status)
+         VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, 'active')`, [
+                randomUUID(),
+                input.fact,
+                input.type,
+                input.module,
+                input.confidence ?? 0.8,
+                JSON.stringify(input.citations ?? []),
+                JSON.stringify(input.tags ?? []),
+                input.epoch ?? 3,
+                now,
+                now,
+                input.supersedes ?? null,
+            ]);
+        }
+        this.persist();
+    }
+    // ─── Export ────────────────────────────────────────────────────────────
+    async exportAll() {
+        const rows = this.query('SELECT * FROM facts');
+        return rows.map(rowToFact);
+    }
+    async count() {
+        const row = this.query('SELECT COUNT(*) as cnt FROM facts')[0];
+        return row?.cnt ?? 0;
+    }
+    // ─── Internal Helpers ──────────────────────────────────────────────────
+    findDuplicateCandidates(facts) {
+        const candidates = [];
+        for (let i = 0; i < facts.length; i++) {
+            for (let j = i + 1; j < facts.length; j++) {
+                const a = facts[i];
+                const b = facts[j];
+                // Only compare within same module
+                if (a.module !== b.module)
+                    continue;
+                const similarity = this.wordOverlap(a.fact, b.fact);
+                if (similarity >= 0.6) {
+                    candidates.push({
+                        a: a.id,
+                        b: b.id,
+                        similarity: `${Math.round(similarity * 100)}%`,
+                    });
+                }
+            }
+        }
+        return candidates;
+    }
+    wordOverlap(textA, textB) {
+        const wordsA = new Set(textA.toLowerCase().split(/\W+/).filter((w) => w.length > 2));
+        const wordsB = new Set(textB.toLowerCase().split(/\W+/).filter((w) => w.length > 2));
+        if (wordsA.size === 0 || wordsB.size === 0)
+            return 0;
+        let overlap = 0;
+        for (const word of wordsA) {
+            if (wordsB.has(word))
+                overlap++;
+        }
+        return overlap / Math.max(wordsA.size, wordsB.size);
+    }
+    /** Close the database connection. */
+    close() {
+        this.db.close();
+    }
+}
+//# sourceMappingURL=sqlite.adapter.js.map

package/dist/adapters/sqlite.adapter.js.map

@@ -0,0 +1 @@
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