@plebeiantech/lat.md 0.12.3-fork.3 → 0.12.3-fork.5

package/dist/src/view/store.js

@@ -8,10 +8,14 @@ import { toPosix } from '../walk.js';
 import { renderMarkdown } from './markdown.js';
 import { buildViewDiagnostics } from './diagnostics.js';
 import { buildGitDiffTree } from './git-diff.js';
+import { buildViewGraph } from './graph.js';
+import { buildViewTableOfContents } from './table-of-contents.js';
 import { emptyViewGitSnapshot, findViewGitRepository, readViewGitSnapshot, sameViewGitSnapshot, } from './git.js';
+import { DEFAULT_VIEW_LOGO_TEXT } from './protocol.js';
 import { createMarkdownWikiLinkResolver, getViewSource, ViewDocumentNotFoundError, } from './repository.js';
 import { buildViewReferenceIndex, parseViewMarkdownFile, renderSectionBackReferences, } from './references.js';
 const DEFAULT_DEBOUNCE_MS = 75;
+const DEFAULT_GIT_POLL_MS = 2_000;
 function isInside(root, candidate) {
     const rel = relative(root, candidate);
     return (rel === '' ||
@@ -21,6 +25,10 @@ function projectPath(projectRoot, path) {
     const normalized = isAbsolute(path) ? relative(projectRoot, path) : path;
     return toPosix(normalized).replace(/^\.\//, '');
 }
+function excludedCodePath(projectRoot, path, excludedPaths) {
+    const absolutePath = resolve(projectRoot, path);
+    return excludedPaths.some((root) => isInside(resolve(root), absolutePath));
+}
 function sourcePath(path) {
     return SOURCE_EXTENSIONS.has(extname(path).toLowerCase());
 }
@@ -64,11 +72,14 @@ async function loadCodeReferenceFiles(projectRoot, refs) {
     }));
     return files;
 }
-async function scanCodeState(projectRoot) {
+async function scanCodeState(projectRoot, excludedPaths = []) {
     const scan = await scanCodeRefs(projectRoot);
-    const scope = new Set(scan.files.map((path) => projectPath(projectRoot, path)));
+    const allowed = (path) => !excludedCodePath(projectRoot, path, excludedPaths);
+    const files = scan.files.filter(allowed);
+    const refs = scan.refs.filter((ref) => allowed(ref.file));
+    const scope = new Set(files.map((path) => projectPath(projectRoot, path)));
     return {
-        files: await loadCodeReferenceFiles(projectRoot, scan.refs),
+        files: await loadCodeReferenceFiles(projectRoot, refs),
         scope,
     };
 }
@@ -89,18 +100,21 @@ function viewIndex(latDir, paths, diagnostics, git) {
                 files: Object.fromEntries([...git.files].map(([path, file]) => [path, file.status])),
             }
             : null,
+        logoText: DEFAULT_VIEW_LOGO_TEXT,
     };
 }
 async function buildSnapshot(latDir, projectRoot, markdownFiles, codeFiles, git, generation, markdownGeneration) {
     const files = new Map([...markdownFiles].sort(([left], [right]) => left.localeCompare(right)));
     const allSections = [...files.values()].flatMap((file) => file.sections);
     const diagnostics = await buildViewDiagnostics(files.values(), codeFiles.values(), allSections, projectRoot);
+    const references = buildViewReferenceIndex(files.values(), codeFiles.values(), allSections);
     return {
         generation,
         markdownGeneration,
         files,
         allSections,
-        references: buildViewReferenceIndex(files.values(), codeFiles.values(), allSections),
+        references,
+        graph: buildViewGraph(files.values(), codeFiles.values(), allSections, diagnostics, git, generation),
         diagnostics,
         git,
         index: viewIndex(latDir, [...files.keys()], diagnostics, git),
@@ -121,6 +135,8 @@ export class ViewStore {
     watcher = null;
     pendingPaths = new Set();
     debounceTimer = null;
+    gitPollTimer = null;
+    gitPollQueued = false;
     refreshTail = Promise.resolve();
     closed = false;
     constructor(latDir, projectRoot, realLatDir, snapshot, codeFiles, codeScope, gitRepository, options) {
@@ -140,6 +156,7 @@ export class ViewStore {
         return this.snapshotValue.markdownGeneration;
     }
     startWatching() {
+        this.startGitPolling();
         if (this.options.watch === false || this.watcher)
             return;
         try {
@@ -159,6 +176,9 @@ export class ViewStore {
     getIndex() {
         return this.snapshotValue.index;
     }
+    getGraph() {
+        return this.snapshotValue.graph;
+    }
     async getDocument(requestedPath) {
         if (!requestedPath ||
             requestedPath.includes('\\') ||
@@ -171,19 +191,39 @@ export class ViewStore {
         if (!file) {
             throw new ViewDocumentNotFoundError('Markdown document not found');
         }
-        const resolver = await createMarkdownWikiLinkResolver(this.latDir, requestedPath, snapshot.allSections);
+        const resolver = await createMarkdownWikiLinkResolver(this.latDir, requestedPath, snapshot.allSections, snapshot.references);
         const rendered = await renderMarkdown(file.content, requestedPath, resolver, { errors: [...(snapshot.diagnostics.get(requestedPath) ?? [])] }, file.tree);
+        const errors = [...(snapshot.diagnostics.get(requestedPath) ?? [])];
         const gitFile = snapshot.git.files.get(requestedPath);
-        const gitRendered = gitFile
-            ? await renderMarkdown(file.content, requestedPath, resolver, { errors: [...(snapshot.diagnostics.get(requestedPath) ?? [])] }, buildGitDiffTree(gitFile.baseContent, file.content, file.tree))
+        const gitTree = gitFile
+            ? buildGitDiffTree(gitFile.baseContent, file.content, file.tree)
+            : null;
+        const gitRendered = gitTree
+            ? await renderMarkdown(file.content, requestedPath, resolver, { errors }, gitTree)
             : null;
-        const errors = [...(snapshot.diagnostics.get(requestedPath) ?? [])];
         return {
             path: requestedPath,
             ...rendered,
             gitHtml: gitRendered?.html ?? null,
+            tableOfContents: buildViewTableOfContents(file.sections, file.tree, {
+                errors,
+                gitTree,
+            }),
+            graphNodeIds: Object.fromEntries(snapshot.graph.nodes
+                .filter((node) => node.documentPath === requestedPath && node.kind === 'document')
+                .map((node) => {
+                const hash = new URL(node.url, 'http://lat.local').hash.slice(1);
+                let headingId = hash;
+                try {
+                    headingId = decodeURIComponent(hash);
+                }
+                catch {
+                    // Keep malformed fragments as-is; they cannot collide with valid ids.
+                }
+                return [headingId, node.id];
+            })),
             errors,
-            backReferences: await renderSectionBackReferences(snapshot.references, file.sections, this.latDir, this.projectRoot, (path) => createMarkdownWikiLinkResolver(this.latDir, path, snapshot.allSections)),
+            backReferences: await renderSectionBackReferences(snapshot.references, file.sections, this.latDir, this.projectRoot, (path) => createMarkdownWikiLinkResolver(this.latDir, path, snapshot.allSections, snapshot.references)),
             frontmatter: {
                 requireCodeMention: parseFrontmatter(file.content).requireCodeMention === true,
             },
@@ -197,7 +237,10 @@ export class ViewStore {
         if (this.closed)
             return Promise.resolve();
         const normalized = paths.map((path) => path ? projectPath(this.projectRoot, path) : '');
-        const refresh = this.refreshTail.then(() => this.applyRefresh(normalized));
+        return this.queueRefresh(normalized, false);
+    }
+    queueRefresh(paths, pollGit) {
+        const refresh = this.refreshTail.then(() => this.applyRefresh(paths, pollGit));
         this.refreshTail = refresh.catch(() => { });
         return refresh;
     }
@@ -206,6 +249,9 @@ export class ViewStore {
         if (this.debounceTimer)
             clearTimeout(this.debounceTimer);
         this.debounceTimer = null;
+        if (this.gitPollTimer)
+            clearInterval(this.gitPollTimer);
+        this.gitPollTimer = null;
         this.watcher?.close();
         this.watcher = null;
         await this.refreshTail;
@@ -226,6 +272,24 @@ export class ViewStore {
             });
         }, this.options.debounceMs ?? DEFAULT_DEBOUNCE_MS);
     }
+    startGitPolling() {
+        const interval = this.options.gitPollMs ?? DEFAULT_GIT_POLL_MS;
+        if (!this.gitRepository || interval <= 0 || this.gitPollTimer)
+            return;
+        this.gitPollTimer = setInterval(() => {
+            if (this.closed || this.gitPollQueued)
+                return;
+            this.gitPollQueued = true;
+            void this.queueRefresh([], true)
+                .catch((error) => {
+                process.stderr.write(`lat ui git: ${error.message}\n`);
+            })
+                .finally(() => {
+                this.gitPollQueued = false;
+            });
+        }, interval);
+        this.gitPollTimer.unref();
+    }
     async readMarkdownFile(absolutePath) {
         let realFile;
         try {
@@ -239,7 +303,7 @@ export class ViewStore {
         const content = await readFile(realFile, 'utf8');
         return parseViewMarkdownFile(absolutePath, content, this.latDir, this.projectRoot);
     }
-    async applyRefresh(paths) {
+    async applyRefresh(paths, pollGit) {
         const fullRefresh = paths.includes('');
         const latPath = projectPath(this.projectRoot, this.latDir);
         const touchesMarkdown = fullRefresh ||
@@ -298,7 +362,7 @@ export class ViewStore {
             }
             linkedResourceChanged = paths.some((path) => path.startsWith(`${latPath}/`) && !path.toLowerCase().endsWith('.md'));
         }
-        if (touchesMarkdown && this.gitRepository) {
+        if ((touchesMarkdown || pollGit) && this.gitRepository) {
             try {
                 const nextGit = await readViewGitSnapshot(this.gitRepository, markdownFiles);
                 gitChanged = !sameViewGitSnapshot(git, nextGit);
@@ -308,12 +372,15 @@ export class ViewStore {
                 process.stderr.write(`lat ui git: ${error.message}\n`);
             }
         }
-        const codePaths = paths.filter((path) => path && sourcePath(path) && !obviouslyIgnoredCodePath(path, latPath));
+        const codePaths = paths.filter((path) => path &&
+            sourcePath(path) &&
+            !obviouslyIgnoredCodePath(path, latPath) &&
+            !excludedCodePath(this.projectRoot, path, this.options.codeExcludePaths ?? []));
         const refreshCodeScope = fullRefresh ||
             paths.some((path) => path === '.gitignore' || path.endsWith('/.gitignore')) ||
             codePaths.some((path) => !this.codeScope.has(path) && !this.ignoredCodePaths.has(path));
         if (refreshCodeScope) {
-            const nextCode = await scanCodeState(this.projectRoot);
+            const nextCode = await scanCodeState(this.projectRoot, this.options.codeExcludePaths);
             codeFiles = nextCode.files;
             this.codeScope = nextCode.scope;
             this.ignoredCodePaths.clear();
@@ -369,7 +436,7 @@ export async function createViewStore(latDir, projectRoot, options = {}) {
     const [realLatDir, markdownPaths, codeState, gitRepository] = await Promise.all([
         realpath(latDir),
         listLatticeFiles(latDir),
-        scanCodeState(projectRoot),
+        scanCodeState(projectRoot, options.codeExcludePaths),
         options.git === false
             ? Promise.resolve(null)
             : findViewGitRepository(projectRoot, latDir),

package/dist/src/view/table-of-contents.d.ts

@@ -0,0 +1,9 @@
+import type { Root } from 'mdast';
+import { type Section } from '../lattice.js';
+import type { ViewDocumentError, ViewDocumentTocItem } from './protocol.js';
+export type ViewTableOfContentsOptions = {
+    errors?: readonly ViewDocumentError[];
+    gitTree?: Root | null;
+};
+/** Project rendered headings into the document's local navigation. */
+export declare function buildViewTableOfContents(sections: Section[], tree: Root, options?: ViewTableOfContentsOptions): ViewDocumentTocItem[];

package/dist/src/view/table-of-contents.js

@@ -0,0 +1,103 @@
+import { visit } from 'unist-util-visit';
+import { flattenSections } from '../lattice.js';
+function headingText(node) {
+    if (!node || typeof node !== 'object')
+        return '';
+    const value = node;
+    if (value.type === 'text' || value.type === 'inlineCode') {
+        return value.value ?? '';
+    }
+    if (value.type === 'image' || value.type === 'imageReference') {
+        return value.alt ?? '';
+    }
+    if (value.type === 'wikiLink') {
+        return value.data?.alias ?? value.value ?? '';
+    }
+    return value.children?.map(headingText).join('') ?? '';
+}
+function sectionAtLine(sections, line) {
+    let owner = null;
+    for (const section of sections) {
+        if (line < section.startLine || line > section.endLine)
+            continue;
+        if (!owner || section.depth >= owner.depth)
+            owner = section;
+    }
+    return owner;
+}
+function classNames(node) {
+    const value = node.data?.hProperties?.className;
+    if (Array.isArray(value))
+        return value.map(String);
+    return value ? [String(value)] : [];
+}
+function hasGitChanges(node) {
+    if (classNames(node).some((name) => name.startsWith('git-'))) {
+        return true;
+    }
+    if (!('children' in node) || !Array.isArray(node.children))
+        return false;
+    return node.children.some((child) => hasGitChanges(child));
+}
+function gitChangedSections(sections, tree) {
+    const changed = new Set();
+    if (!tree)
+        return changed;
+    const headingStack = [];
+    const rootSection = sections[0] ?? null;
+    for (const node of tree.children) {
+        if (node.type === 'heading') {
+            while (headingStack.length > 0 &&
+                headingStack[headingStack.length - 1].depth >= node.depth) {
+                headingStack.pop();
+            }
+            const line = node.position?.start.line;
+            const section = line
+                ? (sections.find((candidate) => candidate.startLine === line && candidate.depth === node.depth) ?? null)
+                : null;
+            if (section)
+                headingStack.push(section);
+            if (hasGitChanges(node)) {
+                const owner = section ?? headingStack[headingStack.length - 1] ?? rootSection;
+                if (owner)
+                    changed.add(owner.id);
+            }
+            continue;
+        }
+        if (!hasGitChanges(node))
+            continue;
+        const line = node.position?.start.line;
+        const owner = (line ? sectionAtLine(sections, line) : null) ??
+            headingStack[headingStack.length - 1] ??
+            rootSection;
+        if (owner)
+            changed.add(owner.id);
+    }
+    return changed;
+}
+/** Project rendered headings into the document's local navigation. */
+export function buildViewTableOfContents(sections, tree, options = {}) {
+    const flatSections = flattenSections(sections);
+    const titles = [];
+    visit(tree, 'heading', (node) => {
+        titles.push(headingText(node));
+    });
+    const errorCounts = new Map();
+    for (const error of options.errors ?? []) {
+        const owner = sectionAtLine(flatSections, error.line);
+        if (owner)
+            errorCounts.set(owner.id, (errorCounts.get(owner.id) ?? 0) + 1);
+    }
+    const gitChanges = gitChangedSections(flatSections, options.gitTree);
+    return flatSections.flatMap((section, index) => section.githubSlug
+        ? [
+            {
+                id: section.githubSlug,
+                title: titles[index] || section.heading,
+                depth: section.depth,
+                errorCount: errorCounts.get(section.id) ?? 0,
+                hasGitChanges: gitChanges.has(section.id),
+            },
+        ]
+        : []);
+}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@plebeiantech/lat.md",
-  "version": "0.12.3-fork.3",
+  "version": "0.12.3-fork.5",
   "description": "A knowledge graph for your codebase, written in markdown",
   "type": "module",
   "license": "MIT",
@@ -32,12 +32,14 @@
     "@vitejs/plugin-react": "^5.0.0",
     "@types/mdast": "^4.0.4",
     "@types/node": "^25.3.0",
+    "graphology": "^0.26.0",
     "highlight.js": "^11.12.0",
     "mdast-util-from-markdown": "^2.0.3",
     "micromark-util-types": "^2.0.2",
     "prettier": "^3.8.1",
     "react": "^19.0.0",
     "react-dom": "^19.0.0",
+    "sigma": "^3.0.3",
     "tsx": "^4.21.0",
     "typescript": "^5.7.0",
     "vite": "^7.0.0",

package/templates/AGENTS.md

@@ -17,6 +17,8 @@ After EVERY task, before responding to the user:
 
 This project uses [lat.md](https://www.npmjs.com/package/lat.md) to maintain a structured knowledge graph of its architecture, design decisions, and test specs in the `lat.md/` directory. It is a set of cross-linked markdown files that describe **what** this project does and **why** — the domain concepts, key design decisions, business logic, and test specifications. Use it to ground your work in the actual architecture rather than guessing. Do not treat `lat.md/` as a journal or changelog; it should be a focused snapshot of current or planned state, and should not grow just to note insignificant details.
 
+Project-specific lat documentation belongs in `lat.md/`. Do not modify this generated instruction file or a generated `lat-md` `SKILL.md` to record project guidance: both are owned by lat tooling and may be replaced by a later `lat init`.
+
 # Commands
 
 ```bash

package/templates/skill/SKILL.md

@@ -10,6 +10,8 @@ description: >-
 
 This skill covers the syntax, structure rules, and conventions for writing `lat.md/` files. Load it whenever you need to create or edit sections in the `lat.md/` directory.
 
+Project-specific lat documentation belongs in `lat.md/`. Do not modify this generated skill or a generated `AGENTS.md` to record project guidance: both are owned by lat tooling and may be replaced by a later `lat init`.
+
 ## What belongs in lat.md
 
 `lat.md/` files describe **what** the project does and **why** — domain concepts, key design decisions, business logic, and test specifications. They do NOT duplicate source code. Think of each section as an anchor that source code references back to.

package/dist/src/view/client/assets/index-B0n0u03y.css

@@ -1 +0,0 @@
-:root{color:#25231f;background:#f8f7f3;font-family:Inter,ui-sans-serif,system-ui,-apple-system,BlinkMacSystemFont,Segoe UI,sans-serif;font-synthesis:none;text-rendering:optimizeLegibility;--background: #f8f7f3;--panel: #f0eee8;--panel-border: #dedbd1;--text: #25231f;--muted: #777268;--accent: #7357d9;--accent-soft: #e7e0ff;--danger: #b72f3d;--danger-soft: #f8dfe2;--danger-border: #e7a5ad;--warning: #a87000;--warning-soft: #f5e7b8;--success: #2f7a48;--success-soft: #dceede;--git-notification: #e47f19;--code: #ece9e1;--syntax-built-in: #9a3f75;--syntax-comment: #777268;--syntax-keyword: #6c4bc2;--syntax-number: #a85414;--syntax-string: #397348;--syntax-title: #26649a}@media(prefers-color-scheme:dark){:root{color:#e8e6df;background:#181816;--background: #181816;--panel: #201f1c;--panel-border: #34322d;--text: #e8e6df;--muted: #9c978d;--accent: #ad9aff;--accent-soft: #332b52;--danger: #ff7e8a;--danger-soft: #49262b;--danger-border: #713941;--warning: #e9bd4c;--warning-soft: #43391e;--success: #83d79a;--success-soft: #213d29;--git-notification: #f0a044;--code: #25241f;--syntax-built-in: #e6a2cc;--syntax-comment: #88847c;--syntax-keyword: #c2adff;--syntax-number: #efb271;--syntax-string: #9fd0a5;--syntax-title: #8fc6ef}}*{box-sizing:border-box}body{margin:0;min-width:320px;min-height:100vh;color:var(--text);background:var(--background)}a{color:var(--accent)}.app-shell{display:grid;grid-template-columns:260px minmax(0,1fr);min-height:100vh}.sidebar{position:sticky;top:0;height:100vh;padding:28px 18px;overflow-y:auto;background:var(--panel);border-right:1px solid var(--panel-border)}.sidebar-header{display:flex;margin:0 10px 34px;align-items:center;justify-content:space-between}.brand{display:inline-block;color:var(--text);font-family:ui-monospace,SFMono-Regular,Menlo,Monaco,Consolas,monospace;font-size:21px;font-weight:750;letter-spacing:-.04em;text-decoration:none}.brand span{color:var(--accent)}.sidebar-actions{display:flex;align-items:center;gap:3px}.sidebar-search,.sidebar-git{display:inline-flex;width:28px;height:28px;align-items:center;justify-content:center;color:var(--muted);cursor:pointer;background:transparent;border:0;border-radius:6px}.sidebar-search:hover,.sidebar-search[aria-current=page],.sidebar-git:hover{color:var(--accent);background:var(--accent-soft)}.sidebar-git[aria-pressed=true]{color:var(--warning);background:var(--warning-soft)}.sidebar-git{position:relative}.sidebar-git[data-has-changes=true]:after{position:absolute;top:3px;right:3px;width:6px;height:6px;content:"";background:var(--git-notification);border-radius:50%;box-shadow:0 0 0 1.5px var(--panel)}.sidebar-search svg,.sidebar-git svg{width:17px;height:17px;fill:none;stroke:currentColor;stroke-linecap:round;stroke-width:1.8}.file-tree{display:grid;min-width:0;gap:2px}.tree-directory>summary{display:flex;padding:7px 10px;align-items:center;gap:7px;color:var(--muted);font-size:12px;font-weight:650;cursor:pointer;list-style:none;border-radius:7px}.tree-directory>summary::-webkit-details-marker{display:none}.tree-directory>summary>a,.tree-directory>summary>span{min-width:0;flex:1;color:inherit;text-decoration:none}.tree-directory>summary>a,.tree-directory>summary>span{display:flex;align-items:center;gap:8px}.tree-directory>summary:before{content:"›";display:inline-block;width:10px;font-size:15px;line-height:1;transform-origin:center;transition:transform .12s ease}.tree-directory[open]>summary:before{transform:rotate(90deg)}.tree-directory>summary:hover{color:var(--text);background:color-mix(in srgb,var(--accent-soft) 55%,transparent)}.tree-children{display:grid;margin-left:15px;padding-left:7px;gap:2px;border-left:1px solid var(--panel-border)}.tree-directory[open]>.tree-children{margin-top:2px}.document-link{display:flex;padding:7px 10px;align-items:center;gap:8px;overflow:hidden;color:var(--muted);font-size:13px;line-height:1.35;text-decoration:none;text-overflow:ellipsis;white-space:nowrap;border-radius:7px}.document-link-name{min-width:0;flex:1;overflow:hidden;text-overflow:ellipsis;white-space:nowrap}.document-state-disc{width:7px;height:7px;flex:0 0 auto;border-radius:50%}.document-state-disc.has-errors{background:var(--danger);box-shadow:0 0 0 2px color-mix(in srgb,var(--danger) 12%,transparent)}.document-state-disc.git-modified{background:var(--warning);box-shadow:0 0 0 2px color-mix(in srgb,var(--warning) 12%,transparent)}.document-state-disc.git-new{background:var(--success);box-shadow:0 0 0 2px color-mix(in srgb,var(--success) 12%,transparent)}.document-state-disc.has-errors.git-modified{background:linear-gradient(90deg,var(--danger) 0 50%,var(--warning) 50% 100%)}.document-state-disc.has-errors.git-new{background:linear-gradient(90deg,var(--danger) 0 50%,var(--success) 50% 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