@platforma-sdk/r-builder 1.1.4 → 1.1.6

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package/package.json CHANGED
@@ -2,7 +2,7 @@
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  "name": "@platforma-sdk/r-builder",
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  "description": "Build R run environment for Platforma",
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  "type": "module",
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- "version": "1.1.4",
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+ "version": "1.1.6",
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  "files": [
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  "assets/",
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  "scripts/"
@@ -145,15 +145,50 @@ async function buildRDist(logger, buildDir, installRoot, rRoot) {
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  }
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  const systemLibs = [
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- /ld-linux-x86-64\.so(\.[0-9.]+)?$/,
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- /libm\.so(\.[0-9.]+)?$/,
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- /libcom_err\.so(\.[0-9.]+)?$/,
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+ // Don't include glibc standard libraries and libstdc++ into the R distribution.
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+ // We MUST use system glibc to avoid compatibility issues between system and R runtime and
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+ // to keep integrity of glibc libraries set we can't include parts of it into the R distribution.
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  /libc\.so(\.[0-9.]+)?$/,
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  /libstdc\+\+\.so(\.[0-9.]+)?$/,
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- /libresolv\.so(\.[0-9.]+)?$/,
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+ /libBrokenLocale\.so(\.[0-9.]+)?$/,
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+ /libanl\.so(\.[0-9.]+)?$/,
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+ /libc_malloc_debug\.so(\.[0-9.]+)?$/,
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  /libdl\.so(\.[0-9.]+)?$/,
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+ /libm\.so(\.[0-9.]+)?$/,
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+ /libmemusage\.so(\.[0-9.]+)?$/,
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+ /libmvec\.so(\.[0-9.]+)?$/,
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+ /libnsl\.so(\.[0-9.]+)?$/,
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+ /libnss_compat\.so(\.[0-9.]+)?$/,
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+ /libnss_dns\.so(\.[0-9.]+)?$/,
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+ /libnss_files\.so(\.[0-9.]+)?$/,
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+ /libnss_hesiod\.so(\.[0-9.]+)?$/,
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+ /libpcprofile\.so(\.[0-9.]+)?$/,
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+ /libpthread\.so(\.[0-9.]+)?$/,
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+ /libresolv\.so(\.[0-9.]+)?$/,
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  /librt\.so(\.[0-9.]+)?$/,
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- /libpthread\.so(\.[0-9.]+)?$/
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+ /libthread_db\.so(\.[0-9.]+)?$/,
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+ /libutil\.so(\.[0-9.]+)?$/,
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+
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+ // Don't include Core libraries that are not part of glibc, but known to be highly
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+ // dependent on linux core and are known to exist on most of the systems.
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+ /ld-linux-x86-64\.so(\.[0-9.]+)?$/,
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+ /libcom_err\.so(\.[0-9.]+)?$/,
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+ /libcrypt\.so(\.[0-9.]+)?$/,
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+ /libselinux\.so(\.[0-9.]+)?$/,
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+ /libacl\.so(\.[0-9.]+)?$/,
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+ /libattr\.so(\.[0-9.]+)?$/,
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+ /libblkid\.so(\.[0-9.]+)?$/,
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+ /libmount\.so(\.[0-9.]+)?$/,
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+
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+ // Security and authentication libraries
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+ /libpam\.so(\.[0-9.]+)?$/,
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+ /libaudit\.so(\.[0-9.]+)?$/,
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+ /libcap\.so(\.[0-9.]+)?$/,
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+
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+ // System management libraries
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+ /libsystemd\.so(\.[0-9.]+)?$/,
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+ /libudev\.so(\.[0-9.]+)?$/,
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+ /libapparmor\.so(\.[0-9.]+)?$/,
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  ];
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  function collectDependencies(logger, installDir, patchElf = false) {