@platforma-sdk/model 1.80.8 → 1.80.13

package/dist/components/PlDataTable/createPlDataTable/createPlDataTableV3.cjs

@@ -215,13 +215,15 @@ function filterFilters(filters, resolver) {
 	};
 	return prune(filters);
 }
-/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil. */
+/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil.
+*  Exported for unit testing. */
 function concatFilters(a, b) {
 	if ((0, _milaboratories_helpers.isNil)(a)) return b;
 	if ((0, _milaboratories_helpers.isNil)(b)) return a;
+	const operands = (f) => f.type === "and" ? f.filters : [f];
 	return {
-		...a,
-		filters: [...a.filters, ...b.filters]
+		type: "and",
+		filters: [...operands(a), ...operands(b)]
 	};
 }
 /** Pick user sorting from state if set, otherwise fall back to options default.
@@ -319,6 +321,7 @@ function remapFilterColumnIds(filters, resolver) {
 	return prune(filters);
 }
 //#endregion
+exports.concatFilters = concatFilters;
 exports.createPlDataTableV3 = createPlDataTableV3;
 
 //# sourceMappingURL=createPlDataTableV3.cjs.map

package/dist/components/PlDataTable/createPlDataTable/createPlDataTableV3.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"createPlDataTableV3.cjs","names":["upgradePlDataTableStateV2","deriveAllLabels","isColumnHidden","evaluateRules","createColumnResolver","collectLinkerColumns","createPTableDefV3","discoverLabelColumns","discoverTableColumns","isLeafColumn","hitQualifications","queriesQualifications","buildDataStatusMap","toRuleColumn","getEffectiveVisibility","getOrderPriority","collectFilterSpecColumns"],"sources":["../../../../src/components/PlDataTable/createPlDataTable/createPlDataTableV3.ts"],"sourcesContent":["import type {\n  ColumnUniversalId,\n  FilterSpecNode,\n  PObjectId,\n  PTableColumnId,\n  PTableColumnIdColumn,\n  PTableSorting,\n  MultiColumnSelector,\n  ColumnSelector,\n} from \"@milaboratories/pl-model-common\";\nimport {\n  canonicalizeAxisId,\n  dedupColumns,\n  extractPObjectId,\n  uniqueBy,\n} from \"@milaboratories/pl-model-common\";\nimport { collectFilterSpecColumns } from \"../../../filters/traverse\";\nimport { createColumnResolver, type ColumnResolver } from \"../columnResolver\";\nimport type { RenderCtxBase } from \"../../../render\";\nimport type {\n  PlDataTableColumnsMeta,\n  PlDataTableFilters,\n  PlDataTableFilterSpecLeaf,\n  PlDataTableModel,\n} from \"../typesV8\";\nimport { upgradePlDataTableStateV2 } from \"../state-migration\";\nimport type { PlDataTableStateV2 } from \"../state-migration\";\nimport type { MatchingMode } from \"@milaboratories/pl-model-common\";\nimport {\n  isLeafColumn,\n  hitQualifications,\n  collectLinkerColumns,\n  queriesQualifications,\n  type ColumnRecipe,\n} from \"../../../columns\";\nimport type { DeriveLabelsOptions } from \"../../../labels/derive_distinct_labels\";\nimport {\n  deriveAllLabels,\n  evaluateRules,\n  getEffectiveVisibility,\n  getOrderPriority,\n  isColumnHidden,\n  buildDataStatusMap,\n  toRuleColumn,\n} from \"./utils\";\nimport { createPTableDefV3 } from \"./createPTableDefV3\";\nimport {\n  discoverLabelColumns,\n  discoverTableColumns,\n  type DiscoverTableColumnOptions,\n} from \"./discoverColumns\";\nimport { isNil, isPlainObject, type Nil } from \"@milaboratories/helpers\";\nimport { uniq } from \"es-toolkit\";\n\nexport type createPlDataTableOptionsV3 = (\n  | {\n      columns: Nil | DiscoverTableColumnOptions;\n    }\n  | {\n      primaryColumns: ColumnRecipe[];\n      columns: Nil | ColumnRecipe[];\n    }\n) & {\n  tableState?: PlDataTableStateV2;\n\n  filters?: PlDataTableFilters;\n  sorting?: PTableSorting[];\n  primaryJoinType?: \"inner\" | \"full\";\n\n  labelsOptions?: DeriveLabelsOptions;\n  displayOptions?: ColumnsDisplayOptions;\n};\n\n/** Structured source config — selectors/anchors instead of raw ColumnsSource. */\nexport type ColumnsSelectorConfig = {\n  include?: MultiColumnSelector | MultiColumnSelector[];\n  exclude?: MultiColumnSelector | MultiColumnSelector[];\n  mode?: MatchingMode;\n  maxHops?: number;\n};\n\nexport type ColumnsDisplayOptions = {\n  /** Column ordering rules. Higher priority = further left. First matching rule wins. */\n  ordering?: ColumnOrderRule[];\n  /** Column visibility rules. First matching rule wins. Unmatched columns use default visibility. */\n  visibility?: ColumnVisibilityRule[];\n};\n\nexport type ColumnOrderRule = {\n  match: ColumnSelector;\n  /** Higher number = further left in table */\n  priority: number;\n};\n\nexport type ColumnVisibilityRule = {\n  match: ColumnSelector;\n  visibility: \"default\" | \"optional\" | \"hidden\";\n};\n\nexport function createPlDataTableV3<A, U>(\n  ctx: RenderCtxBase<A, U>,\n  options: createPlDataTableOptionsV3,\n): PlDataTableModel | undefined {\n  const state = upgradePlDataTableStateV2(options.tableState);\n  const primaryJoinType = options.primaryJoinType ?? \"full\";\n\n  const resolved = resolveInputColumns(ctx, options);\n  if (resolved === undefined) return undefined;\n  const { primary, secondary } = resolved;\n  if (primary.length === 0) return undefined;\n\n  const { direct, linked } = splitByTopology(secondary);\n\n  const allColumns = [...primary, ...secondary];\n  const derivedLabels = deriveAllLabels({\n    // Skip hidden columns when deriving labels — they don't appear in the\n    // table, so they shouldn't influence label disambiguation (#1623).\n    columns: allColumns.filter((c) => !isColumnHidden(c.getSpec())).map(toLabelableColumn),\n    deriveLabelsOptions: {\n      includeNativeLabel: true,\n      ...options.labelsOptions,\n    },\n  });\n\n  // Rule-based visibility/order maps (keyed by bare PObjectId). Computed once\n  // here: `computeHiddenColumns` needs visibility to decide the visible set,\n  // and `buildColumnsMeta` (below, once the visible set is known) reuses both.\n  const allColumnsForRules = [...primary, ...direct, ...linked, ...collectLinkerSnapshots(linked)];\n  const visibilityByColId = evaluateRules(\n    options.displayOptions?.visibility ?? [],\n    allColumnsForRules,\n  );\n  const orderByColId = evaluateRules(options.displayOptions?.ordering ?? [], allColumnsForRules);\n\n  const resolver = createColumnResolver(\n    [...primary, ...direct, ...linked.flatMap((lc) => [...collectLinkerColumns(lc), lc])],\n    { warn: ctx.logWarn.bind(ctx) },\n  );\n\n  const remapedDefaultFilters = remapFilterColumnIds(options.filters, resolver);\n  const filters = filterFilters(\n    concatFilters(\n      state.pTableParams.filters,\n      state.pTableParams.defaultFilters ?? remapedDefaultFilters,\n    ),\n    resolver,\n  );\n\n  const sorting = filterSorting(\n    resolveSorting(state.pTableParams.sorting, remapSortingColumnIds(options.sorting, resolver)),\n    resolver,\n  );\n\n  const fullDef = createPTableDefV3({\n    primaryJoinType,\n    primary,\n    secondary: [...direct, ...linked],\n    filters,\n    sorting,\n  });\n\n  const fullHandle = ctx.createPTableV2(fullDef);\n  // TODO: is workaround for dropdown suggestions.\n  // Pframe have not equivalent data for columns relativly to Ptable.\n  // PFrame is the physical column registry — one entry per bare PObjectId,\n  // so strip the rich recipe ids down to their physical leaf id and dedupe:\n  // multiple discovered variants of the same hit collapse to the same bare id.\n  const pframeHandle = ctx.createPFrame(\n    uniq([\n      ...primary.map((v) => extractPObjectId(v.id)),\n      ...direct.map((v) => extractPObjectId(v.id)),\n      ...linked.map((v) => extractPObjectId(v.id)),\n    ]),\n  );\n\n  const hiddenSpecs = state.pTableParams.hiddenColIds;\n  const hiddenColumnIds = computeHiddenColumns({\n    columns: [...primary, ...direct, ...linked],\n    visibilityByColId,\n    sorting,\n    filters,\n    hiddenSpecs,\n  });\n\n  const visible = {\n    primary,\n    direct: direct.filter((c) => !hiddenColumnIds.has(c.id)),\n    linked: linked.filter((c) => !hiddenColumnIds.has(c.id)),\n  };\n  const visibleDef = createPTableDefV3({\n    primaryJoinType,\n    primary,\n    secondary: [...visible.direct, ...visible.linked],\n    filters,\n    sorting,\n  });\n  const visibleHandle = ctx.createPTableV2(visibleDef);\n\n  // Built here, where the visible set is known: per-column data status is\n  // computed for visible columns only (the probe is meaningful only for what\n  // the user sees), while label/visibility/order/axes cover all columns.\n  const columnsMeta = buildColumnsMeta({\n    fullColumns: [...primary, ...direct, ...linked],\n    visibleColumns: [...visible.primary, ...visible.direct, ...visible.linked],\n    primaryColumns: primary,\n    derivedLabels,\n    visibilityByColId,\n    orderByColId,\n  });\n\n  return {\n    sourceId: state.pTableParams.sourceId,\n    fullTableHandle: fullHandle,\n    fullPframeHandle: pframeHandle,\n    visibleTableHandle: visibleHandle,\n    defaultFilters: remapedDefaultFilters,\n    columnsMeta,\n  } satisfies PlDataTableModel;\n}\n\ntype ResolvedColumns = {\n  readonly primary: ColumnRecipe[];\n  readonly secondary: ColumnRecipe[];\n};\n\n/** Normalize either option branch into a {primary, secondary} pair of recipes. */\nfunction resolveInputColumns<A, U>(\n  ctx: RenderCtxBase<A, U>,\n  options: createPlDataTableOptionsV3,\n): undefined | ResolvedColumns {\n  if (\"primaryColumns\" in options) {\n    const primary = options.primaryColumns;\n    const secondary = options.columns ?? [];\n    const labels = discoverLabelColumns(ctx, primary);\n    // Exclude from secondary anything already present in primary: a label\n    // column the block hands in as primary can be re-discovered here as a\n    // label for that same axis, landing in the table twice with the same id.\n    const primaryIds = new Set(primary.map((c) => c.id));\n    return {\n      primary,\n      secondary: dedupColumns(\n        [...secondary, ...labels].filter((c) => !primaryIds.has(c.id)),\n        (c) => c.id,\n        (c) => c.getSpec(),\n      ),\n    };\n  }\n\n  if (isPlainObject(options.columns)) {\n    return discoverTableColumns(ctx, options.columns);\n  }\n\n  return undefined;\n}\n\n/** Split secondary recipes by query topology: leaves (no linker chain) vs joined. */\nfunction splitByTopology(columns: ColumnRecipe[]): {\n  direct: ColumnRecipe[];\n  linked: ColumnRecipe[];\n} {\n  const direct: ColumnRecipe[] = [];\n  const linked: ColumnRecipe[] = [];\n  for (const c of columns) {\n    if (isLeafColumn(c)) direct.push(c);\n    else linked.push(c);\n  }\n  return { direct, linked };\n}\n\n/** All linker recipes across the given linked columns, deduped by id. */\nfunction collectLinkerSnapshots(linked: ColumnRecipe[]): ColumnRecipe[] {\n  return uniqueBy(\n    linked.flatMap((c) => collectLinkerColumns(c)),\n    (c) => c.id,\n  );\n}\n\nfunction toLabelableColumn(col: ColumnRecipe) {\n  return {\n    id: col.id,\n    spec: col.getSpec(),\n    linkerPath: collectLinkerColumns(col).map((linker) => ({\n      linker: { spec: linker.getSpec() },\n    })),\n    qualifications: {\n      forHit: [...hitQualifications(col)],\n      forQueries: queriesQualifications(col),\n    },\n  };\n}\n\n/**\n * Compute display metadata as a sidecar keyed by each emitted column's\n * `ColumnUniversalId` (and axis `AxisId`), instead of baking it into the specs\n * via `withSpecs`. Spec overrides change a recipe's id, so the same physical\n * column reached two ways would diverge into two ids and render twice; keeping\n * meta out of the spec preserves identity and lets dedup collapse such cases.\n * The UI overlays this onto the engine-emitted specs at render time.\n */\nfunction buildColumnsMeta(params: {\n  /** Every column in the table (primary + secondary) — drives `columns` and `axes`. */\n  fullColumns: ColumnRecipe[];\n  /** The visible subset — `status` is probed for these only. */\n  visibleColumns: ColumnRecipe[];\n  /** The primary join columns — their axes are the visible index; all other axes are hidden. */\n  primaryColumns: ColumnRecipe[];\n  derivedLabels: Record<string, string>;\n  visibilityByColId: Map<PObjectId, ColumnVisibilityRule>;\n  orderByColId: Map<PObjectId, ColumnOrderRule>;\n}): PlDataTableColumnsMeta {\n  const { fullColumns, visibleColumns, primaryColumns, derivedLabels } = params;\n  const { visibilityByColId, orderByColId } = params;\n  // Status only for visible columns — the probe is meaningful only for what the\n  // user actually sees; non-visible columns get no `status`.\n  const visibleStatus = buildDataStatusMap(visibleColumns);\n\n  const columns = fullColumns.reduce<PlDataTableColumnsMeta[\"columns\"]>((acc, c) => {\n    const rc = toRuleColumn(c);\n    acc[c.id] = {\n      label: derivedLabels[c.id],\n      visibility: getEffectiveVisibility(rc, visibilityByColId),\n      order: getOrderPriority(rc, orderByColId),\n      status: visibleStatus[c.id],\n    };\n    return acc;\n  }, {});\n\n  // Only primary columns declare the table's visible axes. Any axis introduced\n  // solely by a secondary column (a linker-bridge axis, or a distinct-domain\n  // copy) is flagged hidden — otherwise it renders as a second index axis.\n  const primaryAxisKeys = new Set(\n    primaryColumns.flatMap((c) => c.getSpec().axesSpec.map((a) => canonicalizeAxisId(a))),\n  );\n  const axes = fullColumns.reduce<PlDataTableColumnsMeta[\"axes\"]>(\n    (acc, c) =>\n      c.getSpec().axesSpec.reduce((inner, ax) => {\n        const key = canonicalizeAxisId(ax);\n        if (inner[key] === undefined) inner[key] = { hidden: !primaryAxisKeys.has(key) };\n        return inner;\n      }, acc),\n    {},\n  );\n\n  return { columns, axes };\n}\n\n/** Drop filter leaves whose column references cannot be resolved; rewrite the\n *  resolvable ones through the resolver. Prune empty and/or/not groups. */\nfunction filterFilters(\n  filters: Nil | PlDataTableFilters,\n  resolver: ColumnResolver,\n): Nil | PlDataTableFilters {\n  if (isNil(filters)) return filters;\n\n  const rewriteLeaf = (leaf: PlDataTableFilterSpecLeaf): Nil | PlDataTableFilterSpecLeaf => {\n    if (leaf.type === undefined) return leaf;\n    const result = { ...leaf };\n    if (\"column\" in result) {\n      const c = resolver(result.column);\n      if (isNil(c)) return undefined;\n      result.column = c;\n    }\n    if (\"rhs\" in result) {\n      const c = resolver(result.rhs);\n      if (isNil(c)) return undefined;\n      result.rhs = c;\n    }\n    return result;\n  };\n\n  const prune = (node: PlDataTableFilterNode): Nil | PlDataTableFilterNode => {\n    if (node.type === \"and\" || node.type === \"or\") {\n      const kept = node.filters\n        .map((f) => prune(f))\n        .filter((f): f is PlDataTableFilterNode => !isNil(f));\n      if (kept.length === 0) return undefined;\n      return { type: node.type, filters: kept };\n    }\n    if (node.type === \"not\") {\n      const inner = prune(node.filter);\n      return isNil(inner) ? undefined : { type: \"not\", filter: inner };\n    }\n    return rewriteLeaf(node);\n  };\n\n  return prune(filters) as Nil | PlDataTableFilters;\n}\n\n/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil. */\nfunction concatFilters(\n  a: Nil | PlDataTableFilters,\n  b: Nil | PlDataTableFilters,\n): Nil | PlDataTableFilters {\n  if (isNil(a)) return b;\n  if (isNil(b)) return a;\n  return { ...a, filters: [...a.filters, ...b.filters] };\n}\n\n/** Pick user sorting from state if set, otherwise fall back to options default.\n *  null = user has not touched sorting → use default;\n *  [] = user has explicitly cleared sorting → no sorting (default ignored). */\nfunction resolveSorting(\n  userSorting: Nil | PTableSorting[],\n  defaultSorting: Nil | PTableSorting[],\n): PTableSorting[] {\n  return (isNil(userSorting) ? defaultSorting : userSorting) ?? [];\n}\n\n/** Rewrite sorting entries through the resolver; drop those that fail to resolve. */\nfunction filterSorting(sorting: PTableSorting[], resolver: ColumnResolver): PTableSorting[] {\n  return sorting.flatMap((s) => {\n    const col = resolver(s.column);\n    return isNil(col) ? [] : [{ ...s, column: col }];\n  });\n}\n\n/** Determine which columns should be hidden based on state or optional-column defaults.\n *  Keyed by the recipe's logical {@link ColumnUniversalId} (rich) — variants of\n *  the same physical column are independently visible/hidden. */\nfunction computeHiddenColumns(params: {\n  columns: ColumnRecipe[];\n  visibilityByColId: Map<PObjectId, ColumnVisibilityRule>;\n  sorting: Nil | PTableSorting[];\n  filters: Nil | PlDataTableFilters;\n  hiddenSpecs: Nil | PTableColumnId[];\n}): Set<ColumnUniversalId> {\n  const { columns, visibilityByColId, sorting, filters, hiddenSpecs } = params;\n  const visibilityOf = (c: ColumnRecipe) =>\n    getEffectiveVisibility(toRuleColumn(c), visibilityByColId);\n  const alwaysHidden = columns.filter((c) => visibilityOf(c) === \"hidden\").map((c) => c.id);\n  const optionalHidden = !isNil(hiddenSpecs)\n    ? hiddenSpecs.filter((s): s is PTableColumnIdColumn => s.type === \"column\").map((s) => s.id)\n    : columns.filter((c) => visibilityOf(c) === \"optional\").map((c) => c.id);\n  const initial = [...alwaysHidden, ...optionalHidden];\n  const preserved = collectPreservedColumnIds(sorting, filters);\n\n  return new Set(initial.filter((id) => !preserved.has(id)));\n}\n\n/** Collect IDs of columns that must remain visible (sorted, filtered). */\nfunction collectPreservedColumnIds(\n  sorting: Nil | PTableSorting[],\n  filters: Nil | PlDataTableFilters,\n): Set<ColumnUniversalId> {\n  const sortedIds = (sorting ?? [])\n    .map((s) => s.column)\n    .filter((c): c is PTableColumnIdColumn => c.type === \"column\")\n    .map((c) => c.id);\n\n  const filterIds = !isNil(filters)\n    ? collectFilterSpecColumns(filters).flatMap((c) => (c.type === \"column\" ? [c.id] : []))\n    : [];\n\n  return new Set<ColumnUniversalId>([...sortedIds, ...filterIds]);\n}\n\n/** Remap column references in sorting entries through the resolver.\n *  Unresolved entries are dropped with a warning (best-effort contract). */\nfunction remapSortingColumnIds(\n  sorting: Nil | PTableSorting[],\n  resolver: ColumnResolver,\n): Nil | PTableSorting[] {\n  return sorting?.flatMap((s) => {\n    const col = resolver(s.column);\n    if (isNil(col)) {\n      console.warn(\n        `Sorting column ${JSON.stringify(s.column)} does not match any discovered column — dropped.`,\n      );\n      return [];\n    }\n    return [{ ...s, column: col }];\n  });\n}\n\ntype PlDataTableFilterNode = FilterSpecNode<PlDataTableFilterSpecLeaf>;\n\n/** Remap column references in a filter tree through the resolver.\n *  Unresolved leaves are dropped with a warning; empty groups are pruned. */\nfunction remapFilterColumnIds(\n  filters: Nil | PlDataTableFilters,\n  resolver: ColumnResolver,\n): Nil | PlDataTableFilters {\n  if (isNil(filters)) return filters;\n\n  const mapLeaf = (leaf: PlDataTableFilterSpecLeaf): Nil | PlDataTableFilterSpecLeaf => {\n    if (leaf.type === undefined) return leaf;\n    const result = { ...leaf };\n    if (\"column\" in result) {\n      const c = resolver(result.column);\n      if (isNil(c)) {\n        console.warn(\n          `Filter column ${JSON.stringify(result.column)} does not match any discovered column — dropped.`,\n        );\n        return undefined;\n      }\n      result.column = c;\n    }\n    if (\"rhs\" in result) {\n      const c = resolver(result.rhs);\n      if (isNil(c)) {\n        console.warn(\n          `Filter rhs ${JSON.stringify(result.rhs)} does not match any discovered column — dropped.`,\n        );\n        return undefined;\n      }\n      result.rhs = c;\n    }\n    return result;\n  };\n\n  const prune = (node: PlDataTableFilterNode): Nil | PlDataTableFilterNode => {\n    if (node.type === \"and\" || node.type === \"or\") {\n      const kept = node.filters\n        .map((f) => prune(f))\n        .filter((f): f is PlDataTableFilterNode => !isNil(f));\n      if (kept.length === 0) return undefined;\n      return { type: node.type, filters: kept };\n    }\n    if (node.type === \"not\") {\n      const inner = prune(node.filter);\n      return isNil(inner) ? undefined : { type: \"not\", filter: inner };\n    }\n    return mapLeaf(node);\n  };\n\n  return prune(filters) as Nil | PlDataTableFilters;\n}\n\nconst _ = [\n  {\n    type: \"column\",\n    id: '{\"__isRef\":true,\"blockId\":\"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\",\"name\":\"clusters.assign.clusterLabel\"}',\n    spec: {\n      kind: \"PColumn\",\n      axesSpec: [\n        {\n          name: \"pl7.app/vdj/clonotypeKey\",\n          type: \"String\",\n          domain: {\n            \"pl7.app/redefined-by\": \"aabfc81f-0fc9-4699-84e8-6e749a3e384d\",\n            \"pl7.app/vdj/chain\": \"IGHeavy\",\n            \"pl7.app/vdj/clonotypeKey/structure\":\n              '[[\"pl7.app/vdj/sequence\",[\"pl7.app/alphabet\",\"aminoacid\"],[\"pl7.app/vdj/feature\",\"VDJRegion\"]]]',\n            \"pl7.app/vdj/clonotypingRunId\": \"6cfab875-649e-4c52-bb69-fe976c2b57a0\",\n          },\n          annotations: {\n            \"pl7.app/label\": \"Clonotype ID\",\n            \"pl7.app/segmentedBy\": '[\"pl7.app/vdj/clonotypingRunId\"]',\n            \"pl7.app/table/fontFamily\": \"monospace\",\n            \"pl7.app/table/orderPriority\": \"110000\",\n            \"pl7.app/table/visibility\": \"default\",\n          },\n        },\n      ],\n      name: \"pl7.app/clusterId\",\n      valueType: \"String\",\n      domain: {\n        \"pl7.app/clustering/algorithm\": \"foldseek\",\n        \"pl7.app/clustering/blockId\": \"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\",\n      },\n      annotations: {\n        \"pl7.app/label\": \"Cluster Id\",\n        \"pl7.app/structure/clusteringSource\": \"foldseek\",\n        \"pl7.app/trace\":\n          '[{\"type\":\"milaboratories.samples-and-data\",\"id\":\"0189e23b-5e8d-4648-8c6d-70caa5c26958\",\"importance\":10,\"label\":\"Samples & Data\"},{\"type\":\"milaboratories.samples-and-data/dataset\",\"id\":\"34U3GEP5PGJF45UG3A2WZ3JO\",\"importance\":100,\"label\":\"MB135 + Podocytes\"},{\"label\":\"MiXCR generic amplicon\",\"type\":\"milaboratories.mixcr-amplicon-alignment\",\"id\":\"6cfab875-649e-4c52-bb69-fe976c2b57a0\",\"importance\":20},{\"type\":\"milaboratories.redefine-clonotypes\",\"importance\":30,\"label\":\"Imputed VDJRegion aa\"},{\"type\":\"milaboratories.antibody-tcr-lead-selection\",\"importance\":30,\"label\":\"Selected Leads\"},{\"type\":\"milaboratories.3d-structure-prediction\",\"id\":\"d204391a-e7dd-434d-9c24-ef77b5da81e0\",\"importance\":20,\"label\":\"Camelid (VHH/nanobody) NBB2, CDRH3 ≤ 2.5 Å\"},{\"type\":\"milaboratories.3d-structure-clustering.clustering\",\"id\":\"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\",\"importance\":30,\"label\":\"Full Structure+AA, TM≥0.95, cov≥0.95\"}]',\n      },\n    },\n  },\n  {\n    type: \"column\",\n    id: '{\"__isDiscovered\":true,\"column\":\"{\\\\\"__isRef\\\\\":true,\\\\\"blockId\\\\\":\\\\\"440a489a-8ae8-4982-9d1e-6297e7b8b8d0\\\\\",\\\\\"name\\\\\":\\\\\"pf.clusterLabel4\\\\\"}\",\"path\":[{\"column\":\"{\\\\\"__isRef\\\\\":true,\\\\\"blockId\\\\\":\\\\\"440a489a-8ae8-4982-9d1e-6297e7b8b8d0\\\\\",\\\\\"name\\\\\":\\\\\"pf.link3\\\\\"}\",\"type\":\"linker\"}]}',\n    spec: {\n      kind: \"PColumn\",\n      axesSpec: [\n        {\n          name: \"pl7.app/clusterId\",\n          type: \"String\",\n          domain: {\n            \"pl7.app/clustering/algorithm\": \"mmseqs2\",\n            \"pl7.app/clustering/blockId\": \"440a489a-8ae8-4982-9d1e-6297e7b8b8d0\",\n            \"pl7.app/redefined-by\": \"aabfc81f-0fc9-4699-84e8-6e749a3e384d\",\n            \"pl7.app/vdj/chain\": \"IGHeavy\",\n            \"pl7.app/vdj/clonotypeKey/structure\":\n              '[[\"pl7.app/vdj/sequence\",[\"pl7.app/alphabet\",\"aminoacid\"],[\"pl7.app/vdj/feature\",\"VDJRegion\"]]]',\n            \"pl7.app/vdj/clonotypingRunId\": \"6cfab875-649e-4c52-bb69-fe976c2b57a0\",\n          },\n          annotations: {\n            \"pl7.app/label\": \"Cluster Id\",\n            \"pl7.app/table/orderPriority\": \"990000\",\n            \"pl7.app/table/visibility\": \"default\",\n          },\n        },\n      ],\n      name: \"pl7.app/label\",\n      valueType: \"String\",\n      annotations: {\n        \"pl7.app/label\": \"Cluster Id\",\n        \"pl7.app/table/visibility\": \"default\",\n        \"pl7.app/trace\":\n          '[{\"importance\":10,\"label\":\"Samples & Data\",\"type\":\"milaboratories.samples-and-data\",\"id\":\"0189e23b-5e8d-4648-8c6d-70caa5c26958\"},{\"id\":\"34U3GEP5PGJF45UG3A2WZ3JO\",\"importance\":100,\"label\":\"MB135 + Podocytes\",\"type\":\"milaboratories.samples-and-data/dataset\"},{\"label\":\"MiXCR generic amplicon\",\"type\":\"milaboratories.mixcr-amplicon-alignment\",\"id\":\"6cfab875-649e-4c52-bb69-fe976c2b57a0\",\"importance\":20},{\"type\":\"milaboratories.redefine-clonotypes\",\"importance\":30,\"label\":\"Imputed VDJRegion aa\"},{\"type\":\"milaboratories.clonotype-clustering.clustering\",\"importance\":30,\"label\":\"Imputed VDJRegion aa, BLOSUM62, ident:0.95, cov:0.95\"}]',\n      },\n    },\n  },\n  {\n    type: \"column\",\n    id: 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Higher priority = further left. First matching rule wins. */\n  ordering?: ColumnOrderRule[];\n  /** Column visibility rules. First matching rule wins. Unmatched columns use default visibility. */\n  visibility?: ColumnVisibilityRule[];\n};\n\nexport type ColumnOrderRule = {\n  match: ColumnSelector;\n  /** Higher number = further left in table */\n  priority: number;\n};\n\nexport type ColumnVisibilityRule = {\n  match: ColumnSelector;\n  visibility: \"default\" | \"optional\" | \"hidden\";\n};\n\nexport function createPlDataTableV3<A, U>(\n  ctx: RenderCtxBase<A, U>,\n  options: createPlDataTableOptionsV3,\n): PlDataTableModel | undefined {\n  const state = upgradePlDataTableStateV2(options.tableState);\n  const primaryJoinType = options.primaryJoinType ?? \"full\";\n\n  const resolved = resolveInputColumns(ctx, options);\n  if (resolved === undefined) return undefined;\n  const { primary, secondary } = resolved;\n  if (primary.length === 0) return undefined;\n\n  const { direct, linked } = splitByTopology(secondary);\n\n  const allColumns = [...primary, ...secondary];\n  const derivedLabels = deriveAllLabels({\n    // Skip hidden columns when deriving labels — they don't appear in the\n    // table, so they shouldn't influence label disambiguation (#1623).\n    columns: allColumns.filter((c) => !isColumnHidden(c.getSpec())).map(toLabelableColumn),\n    deriveLabelsOptions: {\n      includeNativeLabel: true,\n      ...options.labelsOptions,\n    },\n  });\n\n  // Rule-based visibility/order maps (keyed by bare PObjectId). Computed once\n  // here: `computeHiddenColumns` needs visibility to decide the visible set,\n  // and `buildColumnsMeta` (below, once the visible set is known) reuses both.\n  const allColumnsForRules = [...primary, ...direct, ...linked, ...collectLinkerSnapshots(linked)];\n  const visibilityByColId = evaluateRules(\n    options.displayOptions?.visibility ?? [],\n    allColumnsForRules,\n  );\n  const orderByColId = evaluateRules(options.displayOptions?.ordering ?? [], allColumnsForRules);\n\n  const resolver = createColumnResolver(\n    [...primary, ...direct, ...linked.flatMap((lc) => [...collectLinkerColumns(lc), lc])],\n    { warn: ctx.logWarn.bind(ctx) },\n  );\n\n  const remapedDefaultFilters = remapFilterColumnIds(options.filters, resolver);\n  const filters = filterFilters(\n    concatFilters(\n      state.pTableParams.filters,\n      state.pTableParams.defaultFilters ?? remapedDefaultFilters,\n    ),\n    resolver,\n  );\n\n  const sorting = filterSorting(\n    resolveSorting(state.pTableParams.sorting, remapSortingColumnIds(options.sorting, resolver)),\n    resolver,\n  );\n\n  const fullDef = createPTableDefV3({\n    primaryJoinType,\n    primary,\n    secondary: [...direct, ...linked],\n    filters,\n    sorting,\n  });\n\n  const fullHandle = ctx.createPTableV2(fullDef);\n  // TODO: is workaround for dropdown suggestions.\n  // Pframe have not equivalent data for columns relativly to Ptable.\n  // PFrame is the physical column registry — one entry per bare PObjectId,\n  // so strip the rich recipe ids down to their physical leaf id and dedupe:\n  // multiple discovered variants of the same hit collapse to the same bare id.\n  const pframeHandle = ctx.createPFrame(\n    uniq([\n      ...primary.map((v) => extractPObjectId(v.id)),\n      ...direct.map((v) => extractPObjectId(v.id)),\n      ...linked.map((v) => extractPObjectId(v.id)),\n    ]),\n  );\n\n  const hiddenSpecs = state.pTableParams.hiddenColIds;\n  const hiddenColumnIds = computeHiddenColumns({\n    columns: [...primary, ...direct, ...linked],\n    visibilityByColId,\n    sorting,\n    filters,\n    hiddenSpecs,\n  });\n\n  const visible = {\n    primary,\n    direct: direct.filter((c) => !hiddenColumnIds.has(c.id)),\n    linked: linked.filter((c) => !hiddenColumnIds.has(c.id)),\n  };\n  const visibleDef = createPTableDefV3({\n    primaryJoinType,\n    primary,\n    secondary: [...visible.direct, ...visible.linked],\n    filters,\n    sorting,\n  });\n  const visibleHandle = ctx.createPTableV2(visibleDef);\n\n  // Built here, where the visible set is known: per-column data status is\n  // computed for visible columns only (the probe is meaningful only for what\n  // the user sees), while label/visibility/order/axes cover all columns.\n  const columnsMeta = buildColumnsMeta({\n    fullColumns: [...primary, ...direct, ...linked],\n    visibleColumns: [...visible.primary, ...visible.direct, ...visible.linked],\n    primaryColumns: primary,\n    derivedLabels,\n    visibilityByColId,\n    orderByColId,\n  });\n\n  return {\n    sourceId: state.pTableParams.sourceId,\n    fullTableHandle: fullHandle,\n    fullPframeHandle: pframeHandle,\n    visibleTableHandle: visibleHandle,\n    defaultFilters: remapedDefaultFilters,\n    columnsMeta,\n  } satisfies PlDataTableModel;\n}\n\ntype ResolvedColumns = {\n  readonly primary: ColumnRecipe[];\n  readonly secondary: ColumnRecipe[];\n};\n\n/** Normalize either option branch into a {primary, secondary} pair of recipes. */\nfunction resolveInputColumns<A, U>(\n  ctx: RenderCtxBase<A, U>,\n  options: createPlDataTableOptionsV3,\n): undefined | ResolvedColumns {\n  if (\"primaryColumns\" in options) {\n    const primary = options.primaryColumns;\n    const secondary = options.columns ?? [];\n    const labels = discoverLabelColumns(ctx, primary);\n    // Exclude from secondary anything already present in primary: a label\n    // column the block hands in as primary can be re-discovered here as a\n    // label for that same axis, landing in the table twice with the same id.\n    const primaryIds = new Set(primary.map((c) => c.id));\n    return {\n      primary,\n      secondary: dedupColumns(\n        [...secondary, ...labels].filter((c) => !primaryIds.has(c.id)),\n        (c) => c.id,\n        (c) => c.getSpec(),\n      ),\n    };\n  }\n\n  if (isPlainObject(options.columns)) {\n    return discoverTableColumns(ctx, options.columns);\n  }\n\n  return undefined;\n}\n\n/** Split secondary recipes by query topology: leaves (no linker chain) vs joined. */\nfunction splitByTopology(columns: ColumnRecipe[]): {\n  direct: ColumnRecipe[];\n  linked: ColumnRecipe[];\n} {\n  const direct: ColumnRecipe[] = [];\n  const linked: ColumnRecipe[] = [];\n  for (const c of columns) {\n    if (isLeafColumn(c)) direct.push(c);\n    else linked.push(c);\n  }\n  return { direct, linked };\n}\n\n/** All linker recipes across the given linked columns, deduped by id. */\nfunction collectLinkerSnapshots(linked: ColumnRecipe[]): ColumnRecipe[] {\n  return uniqueBy(\n    linked.flatMap((c) => collectLinkerColumns(c)),\n    (c) => c.id,\n  );\n}\n\nfunction toLabelableColumn(col: ColumnRecipe) {\n  return {\n    id: col.id,\n    spec: col.getSpec(),\n    linkerPath: collectLinkerColumns(col).map((linker) => ({\n      linker: { spec: linker.getSpec() },\n    })),\n    qualifications: {\n      forHit: [...hitQualifications(col)],\n      forQueries: queriesQualifications(col),\n    },\n  };\n}\n\n/**\n * Compute display metadata as a sidecar keyed by each emitted column's\n * `ColumnUniversalId` (and axis `AxisId`), instead of baking it into the specs\n * via `withSpecs`. Spec overrides change a recipe's id, so the same physical\n * column reached two ways would diverge into two ids and render twice; keeping\n * meta out of the spec preserves identity and lets dedup collapse such cases.\n * The UI overlays this onto the engine-emitted specs at render time.\n */\nfunction buildColumnsMeta(params: {\n  /** Every column in the table (primary + secondary) — drives `columns` and `axes`. */\n  fullColumns: ColumnRecipe[];\n  /** The visible subset — `status` is probed for these only. */\n  visibleColumns: ColumnRecipe[];\n  /** The primary join columns — their axes are the visible index; all other axes are hidden. */\n  primaryColumns: ColumnRecipe[];\n  derivedLabels: Record<string, string>;\n  visibilityByColId: Map<PObjectId, ColumnVisibilityRule>;\n  orderByColId: Map<PObjectId, ColumnOrderRule>;\n}): PlDataTableColumnsMeta {\n  const { fullColumns, visibleColumns, primaryColumns, derivedLabels } = params;\n  const { visibilityByColId, orderByColId } = params;\n  // Status only for visible columns — the probe is meaningful only for what the\n  // user actually sees; non-visible columns get no `status`.\n  const visibleStatus = buildDataStatusMap(visibleColumns);\n\n  const columns = fullColumns.reduce<PlDataTableColumnsMeta[\"columns\"]>((acc, c) => {\n    const rc = toRuleColumn(c);\n    acc[c.id] = {\n      label: derivedLabels[c.id],\n      visibility: getEffectiveVisibility(rc, visibilityByColId),\n      order: getOrderPriority(rc, orderByColId),\n      status: visibleStatus[c.id],\n    };\n    return acc;\n  }, {});\n\n  // Only primary columns declare the table's visible axes. Any axis introduced\n  // solely by a secondary column (a linker-bridge axis, or a distinct-domain\n  // copy) is flagged hidden — otherwise it renders as a second index axis.\n  const primaryAxisKeys = new Set(\n    primaryColumns.flatMap((c) => c.getSpec().axesSpec.map((a) => canonicalizeAxisId(a))),\n  );\n  const axes = fullColumns.reduce<PlDataTableColumnsMeta[\"axes\"]>(\n    (acc, c) =>\n      c.getSpec().axesSpec.reduce((inner, ax) => {\n        const key = canonicalizeAxisId(ax);\n        if (inner[key] === undefined) inner[key] = { hidden: !primaryAxisKeys.has(key) };\n        return inner;\n      }, acc),\n    {},\n  );\n\n  return { columns, axes };\n}\n\n/** Drop filter leaves whose column references cannot be resolved; rewrite the\n *  resolvable ones through the resolver. Prune empty and/or/not groups. */\nfunction filterFilters(\n  filters: Nil | PlDataTableFilters,\n  resolver: ColumnResolver,\n): Nil | PlDataTableFilters {\n  if (isNil(filters)) return filters;\n\n  const rewriteLeaf = (leaf: PlDataTableFilterSpecLeaf): Nil | PlDataTableFilterSpecLeaf => {\n    if (leaf.type === undefined) return leaf;\n    const result = { ...leaf };\n    if (\"column\" in result) {\n      const c = resolver(result.column);\n      if (isNil(c)) return undefined;\n      result.column = c;\n    }\n    if (\"rhs\" in result) {\n      const c = resolver(result.rhs);\n      if (isNil(c)) return undefined;\n      result.rhs = c;\n    }\n    return result;\n  };\n\n  const prune = (node: PlDataTableFilterNode): Nil | PlDataTableFilterNode => {\n    if (node.type === \"and\" || node.type === \"or\") {\n      const kept = node.filters\n        .map((f) => prune(f))\n        .filter((f): f is PlDataTableFilterNode => !isNil(f));\n      if (kept.length === 0) return undefined;\n      return { type: node.type, filters: kept };\n    }\n    if (node.type === \"not\") {\n      const inner = prune(node.filter);\n      return isNil(inner) ? undefined : { type: \"not\", filter: inner };\n    }\n    return rewriteLeaf(node);\n  };\n\n  return prune(filters) as Nil | PlDataTableFilters;\n}\n\n/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil.\n *  Exported for unit testing. */\nexport function concatFilters(\n  a: Nil | PlDataTableFilters,\n  b: Nil | PlDataTableFilters,\n): Nil | PlDataTableFilters {\n  if (isNil(a)) return b;\n  if (isNil(b)) return a;\n  const operands = (f: PlDataTableFilters): PlDataTableFilterNode[] =>\n    f.type === \"and\" ? f.filters : [f as PlDataTableFilterNode];\n  return { type: \"and\", filters: [...operands(a), ...operands(b)] };\n}\n\n/** Pick user sorting from state if set, otherwise fall back to options default.\n *  null = user has not touched sorting → use default;\n *  [] = user has explicitly cleared sorting → no sorting (default ignored). */\nfunction resolveSorting(\n  userSorting: Nil | PTableSorting[],\n  defaultSorting: Nil | PTableSorting[],\n): PTableSorting[] {\n  return (isNil(userSorting) ? defaultSorting : userSorting) ?? [];\n}\n\n/** Rewrite sorting entries through the resolver; drop those that fail to resolve. */\nfunction filterSorting(sorting: PTableSorting[], resolver: ColumnResolver): PTableSorting[] {\n  return sorting.flatMap((s) => {\n    const col = resolver(s.column);\n    return isNil(col) ? [] : [{ ...s, column: col }];\n  });\n}\n\n/** Determine which columns should be hidden based on state or optional-column defaults.\n *  Keyed by the recipe's logical {@link ColumnUniversalId} (rich) — variants of\n *  the same physical column are independently visible/hidden. */\nfunction computeHiddenColumns(params: {\n  columns: ColumnRecipe[];\n  visibilityByColId: Map<PObjectId, ColumnVisibilityRule>;\n  sorting: Nil | PTableSorting[];\n  filters: Nil | PlDataTableFilters;\n  hiddenSpecs: Nil | PTableColumnId[];\n}): Set<ColumnUniversalId> {\n  const { columns, visibilityByColId, sorting, filters, hiddenSpecs } = params;\n  const visibilityOf = (c: ColumnRecipe) =>\n    getEffectiveVisibility(toRuleColumn(c), visibilityByColId);\n  const alwaysHidden = columns.filter((c) => visibilityOf(c) === \"hidden\").map((c) => c.id);\n  const optionalHidden = !isNil(hiddenSpecs)\n    ? hiddenSpecs.filter((s): s is PTableColumnIdColumn => s.type === \"column\").map((s) => s.id)\n    : columns.filter((c) => visibilityOf(c) === \"optional\").map((c) => c.id);\n  const initial = [...alwaysHidden, ...optionalHidden];\n  const preserved = collectPreservedColumnIds(sorting, filters);\n\n  return new Set(initial.filter((id) => !preserved.has(id)));\n}\n\n/** Collect IDs of columns that must remain visible (sorted, filtered). */\nfunction collectPreservedColumnIds(\n  sorting: Nil | PTableSorting[],\n  filters: Nil | PlDataTableFilters,\n): Set<ColumnUniversalId> {\n  const sortedIds = (sorting ?? [])\n    .map((s) => s.column)\n    .filter((c): c is PTableColumnIdColumn => c.type === \"column\")\n    .map((c) => c.id);\n\n  const filterIds = !isNil(filters)\n    ? collectFilterSpecColumns(filters).flatMap((c) => (c.type === \"column\" ? [c.id] : []))\n    : [];\n\n  return new Set<ColumnUniversalId>([...sortedIds, ...filterIds]);\n}\n\n/** Remap column references in sorting entries through the resolver.\n *  Unresolved entries are dropped with a warning (best-effort contract). */\nfunction remapSortingColumnIds(\n  sorting: Nil | PTableSorting[],\n  resolver: ColumnResolver,\n): Nil | PTableSorting[] {\n  return sorting?.flatMap((s) => {\n    const col = resolver(s.column);\n    if (isNil(col)) {\n      console.warn(\n        `Sorting column ${JSON.stringify(s.column)} does not match any discovered column — dropped.`,\n      );\n      return [];\n    }\n    return [{ ...s, column: col }];\n  });\n}\n\ntype PlDataTableFilterNode = FilterSpecNode<PlDataTableFilterSpecLeaf>;\n\n/** Remap column references in a filter tree through the resolver.\n *  Unresolved leaves are dropped with a warning; empty groups are pruned. */\nfunction remapFilterColumnIds(\n  filters: Nil | PlDataTableFilters,\n  resolver: ColumnResolver,\n): Nil | PlDataTableFilters {\n  if (isNil(filters)) return filters;\n\n  const mapLeaf = (leaf: PlDataTableFilterSpecLeaf): Nil | PlDataTableFilterSpecLeaf => {\n    if (leaf.type === undefined) return leaf;\n    const result = { ...leaf };\n    if (\"column\" in result) {\n      const c = resolver(result.column);\n      if (isNil(c)) {\n        console.warn(\n          `Filter column ${JSON.stringify(result.column)} does not match any discovered column — dropped.`,\n        );\n        return undefined;\n      }\n      result.column = c;\n    }\n    if (\"rhs\" in result) {\n      const c = resolver(result.rhs);\n      if (isNil(c)) {\n        console.warn(\n          `Filter rhs ${JSON.stringify(result.rhs)} does not match any discovered column — dropped.`,\n        );\n        return undefined;\n      }\n      result.rhs = c;\n    }\n    return result;\n  };\n\n  const prune = (node: PlDataTableFilterNode): Nil | PlDataTableFilterNode => {\n    if (node.type === \"and\" || node.type === \"or\") {\n      const kept = node.filters\n        .map((f) => prune(f))\n        .filter((f): f is PlDataTableFilterNode => !isNil(f));\n      if (kept.length === 0) return undefined;\n      return { type: node.type, filters: kept };\n    }\n    if (node.type === \"not\") {\n      const inner = prune(node.filter);\n      return isNil(inner) ? undefined : { type: \"not\", filter: inner };\n    }\n    return mapLeaf(node);\n  };\n\n  return prune(filters) as Nil | 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package/dist/components/PlDataTable/createPlDataTable/createPlDataTableV3.js

@@ -215,13 +215,15 @@ function filterFilters(filters, resolver) {
 	};
 	return prune(filters);
 }
-/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil. */
+/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil.
+*  Exported for unit testing. */
 function concatFilters(a, b) {
 	if (isNil(a)) return b;
 	if (isNil(b)) return a;
+	const operands = (f) => f.type === "and" ? f.filters : [f];
 	return {
-		...a,
-		filters: [...a.filters, ...b.filters]
+		type: "and",
+		filters: [...operands(a), ...operands(b)]
 	};
 }
 /** Pick user sorting from state if set, otherwise fall back to options default.
@@ -319,6 +321,6 @@ function remapFilterColumnIds(filters, resolver) {
 	return prune(filters);
 }
 //#endregion
-export { createPlDataTableV3 };
+export { concatFilters, createPlDataTableV3 };
 
 //# sourceMappingURL=createPlDataTableV3.js.map

package/dist/components/PlDataTable/createPlDataTable/createPlDataTableV3.js.map

@@ -1 +1 @@
-{"version":3,"file":"createPlDataTableV3.js","names":[],"sources":["../../../../src/components/PlDataTable/createPlDataTable/createPlDataTableV3.ts"],"sourcesContent":["import type {\n  ColumnUniversalId,\n  FilterSpecNode,\n  PObjectId,\n  PTableColumnId,\n  PTableColumnIdColumn,\n  PTableSorting,\n  MultiColumnSelector,\n  ColumnSelector,\n} from \"@milaboratories/pl-model-common\";\nimport {\n  canonicalizeAxisId,\n  dedupColumns,\n  extractPObjectId,\n  uniqueBy,\n} from \"@milaboratories/pl-model-common\";\nimport { collectFilterSpecColumns } from \"../../../filters/traverse\";\nimport { createColumnResolver, type ColumnResolver } from \"../columnResolver\";\nimport type { RenderCtxBase } from \"../../../render\";\nimport type {\n  PlDataTableColumnsMeta,\n  PlDataTableFilters,\n  PlDataTableFilterSpecLeaf,\n  PlDataTableModel,\n} from \"../typesV8\";\nimport { upgradePlDataTableStateV2 } from \"../state-migration\";\nimport type { PlDataTableStateV2 } from \"../state-migration\";\nimport type { MatchingMode } from \"@milaboratories/pl-model-common\";\nimport {\n  isLeafColumn,\n  hitQualifications,\n  collectLinkerColumns,\n  queriesQualifications,\n  type ColumnRecipe,\n} from \"../../../columns\";\nimport type { DeriveLabelsOptions } from \"../../../labels/derive_distinct_labels\";\nimport {\n  deriveAllLabels,\n  evaluateRules,\n  getEffectiveVisibility,\n  getOrderPriority,\n  isColumnHidden,\n  buildDataStatusMap,\n  toRuleColumn,\n} from \"./utils\";\nimport { createPTableDefV3 } from \"./createPTableDefV3\";\nimport {\n  discoverLabelColumns,\n  discoverTableColumns,\n  type DiscoverTableColumnOptions,\n} from \"./discoverColumns\";\nimport { isNil, isPlainObject, type Nil } from \"@milaboratories/helpers\";\nimport { uniq } from \"es-toolkit\";\n\nexport type createPlDataTableOptionsV3 = (\n  | {\n      columns: Nil | DiscoverTableColumnOptions;\n    }\n  | {\n      primaryColumns: ColumnRecipe[];\n      columns: Nil | ColumnRecipe[];\n    }\n) & {\n  tableState?: PlDataTableStateV2;\n\n  filters?: PlDataTableFilters;\n  sorting?: PTableSorting[];\n  primaryJoinType?: \"inner\" | \"full\";\n\n  labelsOptions?: DeriveLabelsOptions;\n  displayOptions?: ColumnsDisplayOptions;\n};\n\n/** Structured source config — selectors/anchors instead of raw ColumnsSource. */\nexport type ColumnsSelectorConfig = {\n  include?: MultiColumnSelector | MultiColumnSelector[];\n  exclude?: MultiColumnSelector | MultiColumnSelector[];\n  mode?: MatchingMode;\n  maxHops?: number;\n};\n\nexport type ColumnsDisplayOptions = {\n  /** Column ordering rules. Higher priority = further left. First matching rule wins. */\n  ordering?: ColumnOrderRule[];\n  /** Column visibility rules. First matching rule wins. Unmatched columns use default visibility. */\n  visibility?: ColumnVisibilityRule[];\n};\n\nexport type ColumnOrderRule = {\n  match: ColumnSelector;\n  /** Higher number = further left in table */\n  priority: number;\n};\n\nexport type ColumnVisibilityRule = {\n  match: ColumnSelector;\n  visibility: \"default\" | \"optional\" | \"hidden\";\n};\n\nexport function createPlDataTableV3<A, U>(\n  ctx: RenderCtxBase<A, U>,\n  options: createPlDataTableOptionsV3,\n): PlDataTableModel | undefined {\n  const state = upgradePlDataTableStateV2(options.tableState);\n  const primaryJoinType = options.primaryJoinType ?? \"full\";\n\n  const resolved = resolveInputColumns(ctx, options);\n  if (resolved === undefined) return undefined;\n  const { primary, secondary } = resolved;\n  if (primary.length === 0) return undefined;\n\n  const { direct, linked } = splitByTopology(secondary);\n\n  const allColumns = [...primary, ...secondary];\n  const derivedLabels = deriveAllLabels({\n    // Skip hidden columns when deriving labels — they don't appear in the\n    // table, so they shouldn't influence label disambiguation (#1623).\n    columns: allColumns.filter((c) => !isColumnHidden(c.getSpec())).map(toLabelableColumn),\n    deriveLabelsOptions: {\n      includeNativeLabel: true,\n      ...options.labelsOptions,\n    },\n  });\n\n  // Rule-based visibility/order maps (keyed by bare PObjectId). Computed once\n  // here: `computeHiddenColumns` needs visibility to decide the visible set,\n  // and `buildColumnsMeta` (below, once the visible set is known) reuses both.\n  const allColumnsForRules = [...primary, ...direct, ...linked, ...collectLinkerSnapshots(linked)];\n  const visibilityByColId = evaluateRules(\n    options.displayOptions?.visibility ?? [],\n    allColumnsForRules,\n  );\n  const orderByColId = evaluateRules(options.displayOptions?.ordering ?? [], allColumnsForRules);\n\n  const resolver = createColumnResolver(\n    [...primary, ...direct, ...linked.flatMap((lc) => [...collectLinkerColumns(lc), lc])],\n    { warn: ctx.logWarn.bind(ctx) },\n  );\n\n  const remapedDefaultFilters = remapFilterColumnIds(options.filters, resolver);\n  const filters = filterFilters(\n    concatFilters(\n      state.pTableParams.filters,\n      state.pTableParams.defaultFilters ?? remapedDefaultFilters,\n    ),\n    resolver,\n  );\n\n  const sorting = filterSorting(\n    resolveSorting(state.pTableParams.sorting, remapSortingColumnIds(options.sorting, resolver)),\n    resolver,\n  );\n\n  const fullDef = createPTableDefV3({\n    primaryJoinType,\n    primary,\n    secondary: [...direct, ...linked],\n    filters,\n    sorting,\n  });\n\n  const fullHandle = ctx.createPTableV2(fullDef);\n  // TODO: is workaround for dropdown suggestions.\n  // Pframe have not equivalent data for columns relativly to Ptable.\n  // PFrame is the physical column registry — one entry per bare PObjectId,\n  // so strip the rich recipe ids down to their physical leaf id and dedupe:\n  // multiple discovered variants of the same hit collapse to the same bare id.\n  const pframeHandle = ctx.createPFrame(\n    uniq([\n      ...primary.map((v) => extractPObjectId(v.id)),\n      ...direct.map((v) => extractPObjectId(v.id)),\n      ...linked.map((v) => extractPObjectId(v.id)),\n    ]),\n  );\n\n  const hiddenSpecs = state.pTableParams.hiddenColIds;\n  const hiddenColumnIds = computeHiddenColumns({\n    columns: [...primary, ...direct, ...linked],\n    visibilityByColId,\n    sorting,\n    filters,\n    hiddenSpecs,\n  });\n\n  const visible = {\n    primary,\n    direct: direct.filter((c) => !hiddenColumnIds.has(c.id)),\n    linked: linked.filter((c) => !hiddenColumnIds.has(c.id)),\n  };\n  const visibleDef = createPTableDefV3({\n    primaryJoinType,\n    primary,\n    secondary: [...visible.direct, ...visible.linked],\n    filters,\n    sorting,\n  });\n  const visibleHandle = ctx.createPTableV2(visibleDef);\n\n  // Built here, where the visible set is known: per-column data status is\n  // computed for visible columns only (the probe is meaningful only for what\n  // the user sees), while label/visibility/order/axes cover all columns.\n  const columnsMeta = buildColumnsMeta({\n    fullColumns: [...primary, ...direct, ...linked],\n    visibleColumns: [...visible.primary, ...visible.direct, ...visible.linked],\n    primaryColumns: primary,\n    derivedLabels,\n    visibilityByColId,\n    orderByColId,\n  });\n\n  return {\n    sourceId: state.pTableParams.sourceId,\n    fullTableHandle: fullHandle,\n    fullPframeHandle: pframeHandle,\n    visibleTableHandle: visibleHandle,\n    defaultFilters: remapedDefaultFilters,\n    columnsMeta,\n  } satisfies PlDataTableModel;\n}\n\ntype ResolvedColumns = {\n  readonly primary: ColumnRecipe[];\n  readonly secondary: ColumnRecipe[];\n};\n\n/** Normalize either option branch into a {primary, secondary} pair of recipes. */\nfunction resolveInputColumns<A, U>(\n  ctx: RenderCtxBase<A, U>,\n  options: createPlDataTableOptionsV3,\n): undefined | ResolvedColumns {\n  if (\"primaryColumns\" in options) {\n    const primary = options.primaryColumns;\n    const secondary = options.columns ?? [];\n    const labels = discoverLabelColumns(ctx, primary);\n    // Exclude from secondary anything already present in primary: a label\n    // column the block hands in as primary can be re-discovered here as a\n    // label for that same axis, landing in the table twice with the same id.\n    const primaryIds = new Set(primary.map((c) => c.id));\n    return {\n      primary,\n      secondary: dedupColumns(\n        [...secondary, ...labels].filter((c) => !primaryIds.has(c.id)),\n        (c) => c.id,\n        (c) => c.getSpec(),\n      ),\n    };\n  }\n\n  if (isPlainObject(options.columns)) {\n    return discoverTableColumns(ctx, options.columns);\n  }\n\n  return undefined;\n}\n\n/** Split secondary recipes by query topology: leaves (no linker chain) vs joined. */\nfunction splitByTopology(columns: ColumnRecipe[]): {\n  direct: ColumnRecipe[];\n  linked: ColumnRecipe[];\n} {\n  const direct: ColumnRecipe[] = [];\n  const linked: ColumnRecipe[] = [];\n  for (const c of columns) {\n    if (isLeafColumn(c)) direct.push(c);\n    else linked.push(c);\n  }\n  return { direct, linked };\n}\n\n/** All linker recipes across the given linked columns, deduped by id. */\nfunction collectLinkerSnapshots(linked: ColumnRecipe[]): ColumnRecipe[] {\n  return uniqueBy(\n    linked.flatMap((c) => collectLinkerColumns(c)),\n    (c) => c.id,\n  );\n}\n\nfunction toLabelableColumn(col: ColumnRecipe) {\n  return {\n    id: col.id,\n    spec: col.getSpec(),\n    linkerPath: collectLinkerColumns(col).map((linker) => ({\n      linker: { spec: linker.getSpec() },\n    })),\n    qualifications: {\n      forHit: [...hitQualifications(col)],\n      forQueries: queriesQualifications(col),\n    },\n  };\n}\n\n/**\n * Compute display metadata as a sidecar keyed by each emitted column's\n * `ColumnUniversalId` (and axis `AxisId`), instead of baking it into the specs\n * via `withSpecs`. Spec overrides change a recipe's id, so the same physical\n * column reached two ways would diverge into two ids and render twice; keeping\n * meta out of the spec preserves identity and lets dedup collapse such cases.\n * The UI overlays this onto the engine-emitted specs at render time.\n */\nfunction buildColumnsMeta(params: {\n  /** Every column in the table (primary + secondary) — drives `columns` and `axes`. */\n  fullColumns: ColumnRecipe[];\n  /** The visible subset — `status` is probed for these only. */\n  visibleColumns: ColumnRecipe[];\n  /** The primary join columns — their axes are the visible index; all other axes are hidden. */\n  primaryColumns: ColumnRecipe[];\n  derivedLabels: Record<string, string>;\n  visibilityByColId: Map<PObjectId, ColumnVisibilityRule>;\n  orderByColId: Map<PObjectId, ColumnOrderRule>;\n}): PlDataTableColumnsMeta {\n  const { fullColumns, visibleColumns, primaryColumns, derivedLabels } = params;\n  const { visibilityByColId, orderByColId } = params;\n  // Status only for visible columns — the probe is meaningful only for what the\n  // user actually sees; non-visible columns get no `status`.\n  const visibleStatus = buildDataStatusMap(visibleColumns);\n\n  const columns = fullColumns.reduce<PlDataTableColumnsMeta[\"columns\"]>((acc, c) => {\n    const rc = toRuleColumn(c);\n    acc[c.id] = {\n      label: derivedLabels[c.id],\n      visibility: getEffectiveVisibility(rc, visibilityByColId),\n      order: getOrderPriority(rc, orderByColId),\n      status: visibleStatus[c.id],\n    };\n    return acc;\n  }, {});\n\n  // Only primary columns declare the table's visible axes. Any axis introduced\n  // solely by a secondary column (a linker-bridge axis, or a distinct-domain\n  // copy) is flagged hidden — otherwise it renders as a second index axis.\n  const primaryAxisKeys = new Set(\n    primaryColumns.flatMap((c) => c.getSpec().axesSpec.map((a) => canonicalizeAxisId(a))),\n  );\n  const axes = fullColumns.reduce<PlDataTableColumnsMeta[\"axes\"]>(\n    (acc, c) =>\n      c.getSpec().axesSpec.reduce((inner, ax) => {\n        const key = canonicalizeAxisId(ax);\n        if (inner[key] === undefined) inner[key] = { hidden: !primaryAxisKeys.has(key) };\n        return inner;\n      }, acc),\n    {},\n  );\n\n  return { columns, axes };\n}\n\n/** Drop filter leaves whose column references cannot be resolved; rewrite the\n *  resolvable ones through the resolver. Prune empty and/or/not groups. */\nfunction filterFilters(\n  filters: Nil | PlDataTableFilters,\n  resolver: ColumnResolver,\n): Nil | PlDataTableFilters {\n  if (isNil(filters)) return filters;\n\n  const rewriteLeaf = (leaf: PlDataTableFilterSpecLeaf): Nil | PlDataTableFilterSpecLeaf => {\n    if (leaf.type === undefined) return leaf;\n    const result = { ...leaf };\n    if (\"column\" in result) {\n      const c = resolver(result.column);\n      if (isNil(c)) return undefined;\n      result.column = c;\n    }\n    if (\"rhs\" in result) {\n      const c = resolver(result.rhs);\n      if (isNil(c)) return undefined;\n      result.rhs = c;\n    }\n    return result;\n  };\n\n  const prune = (node: PlDataTableFilterNode): Nil | PlDataTableFilterNode => {\n    if (node.type === \"and\" || node.type === \"or\") {\n      const kept = node.filters\n        .map((f) => prune(f))\n        .filter((f): f is PlDataTableFilterNode => !isNil(f));\n      if (kept.length === 0) return undefined;\n      return { type: node.type, filters: kept };\n    }\n    if (node.type === \"not\") {\n      const inner = prune(node.filter);\n      return isNil(inner) ? undefined : { type: \"not\", filter: inner };\n    }\n    return rewriteLeaf(node);\n  };\n\n  return prune(filters) as Nil | PlDataTableFilters;\n}\n\n/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil. */\nfunction concatFilters(\n  a: Nil | PlDataTableFilters,\n  b: Nil | PlDataTableFilters,\n): Nil | PlDataTableFilters {\n  if (isNil(a)) return b;\n  if (isNil(b)) return a;\n  return { ...a, filters: [...a.filters, ...b.filters] };\n}\n\n/** Pick user sorting from state if set, otherwise fall back to options default.\n *  null = user has not touched sorting → use default;\n *  [] = user has explicitly cleared sorting → no sorting (default ignored). */\nfunction resolveSorting(\n  userSorting: Nil | PTableSorting[],\n  defaultSorting: Nil | PTableSorting[],\n): PTableSorting[] {\n  return (isNil(userSorting) ? defaultSorting : userSorting) ?? [];\n}\n\n/** Rewrite sorting entries through the resolver; drop those that fail to resolve. */\nfunction filterSorting(sorting: PTableSorting[], resolver: ColumnResolver): PTableSorting[] {\n  return sorting.flatMap((s) => {\n    const col = resolver(s.column);\n    return isNil(col) ? [] : [{ ...s, column: col }];\n  });\n}\n\n/** Determine which columns should be hidden based on state or optional-column defaults.\n *  Keyed by the recipe's logical {@link ColumnUniversalId} (rich) — variants of\n *  the same physical column are independently visible/hidden. */\nfunction computeHiddenColumns(params: {\n  columns: ColumnRecipe[];\n  visibilityByColId: Map<PObjectId, ColumnVisibilityRule>;\n  sorting: Nil | PTableSorting[];\n  filters: Nil | PlDataTableFilters;\n  hiddenSpecs: Nil | PTableColumnId[];\n}): Set<ColumnUniversalId> {\n  const { columns, visibilityByColId, sorting, filters, hiddenSpecs } = params;\n  const visibilityOf = (c: ColumnRecipe) =>\n    getEffectiveVisibility(toRuleColumn(c), visibilityByColId);\n  const alwaysHidden = columns.filter((c) => visibilityOf(c) === \"hidden\").map((c) => c.id);\n  const optionalHidden = !isNil(hiddenSpecs)\n    ? hiddenSpecs.filter((s): s is PTableColumnIdColumn => s.type === \"column\").map((s) => s.id)\n    : columns.filter((c) => visibilityOf(c) === \"optional\").map((c) => c.id);\n  const initial = [...alwaysHidden, ...optionalHidden];\n  const preserved = collectPreservedColumnIds(sorting, filters);\n\n  return new Set(initial.filter((id) => !preserved.has(id)));\n}\n\n/** Collect IDs of columns that must remain visible (sorted, filtered). */\nfunction collectPreservedColumnIds(\n  sorting: Nil | PTableSorting[],\n  filters: Nil | PlDataTableFilters,\n): Set<ColumnUniversalId> {\n  const sortedIds = (sorting ?? [])\n    .map((s) => s.column)\n    .filter((c): c is PTableColumnIdColumn => c.type === \"column\")\n    .map((c) => c.id);\n\n  const filterIds = !isNil(filters)\n    ? collectFilterSpecColumns(filters).flatMap((c) => (c.type === \"column\" ? [c.id] : []))\n    : [];\n\n  return new Set<ColumnUniversalId>([...sortedIds, ...filterIds]);\n}\n\n/** Remap column references in sorting entries through the resolver.\n *  Unresolved entries are dropped with a warning (best-effort contract). */\nfunction remapSortingColumnIds(\n  sorting: Nil | PTableSorting[],\n  resolver: ColumnResolver,\n): Nil | PTableSorting[] {\n  return sorting?.flatMap((s) => {\n    const col = resolver(s.column);\n    if (isNil(col)) {\n      console.warn(\n        `Sorting column ${JSON.stringify(s.column)} does not match any discovered column — dropped.`,\n      );\n      return [];\n    }\n    return [{ ...s, column: col }];\n  });\n}\n\ntype PlDataTableFilterNode = FilterSpecNode<PlDataTableFilterSpecLeaf>;\n\n/** Remap column references in a filter tree through the resolver.\n *  Unresolved leaves are dropped with a warning; empty groups are pruned. */\nfunction remapFilterColumnIds(\n  filters: Nil | PlDataTableFilters,\n  resolver: ColumnResolver,\n): Nil | PlDataTableFilters {\n  if (isNil(filters)) return filters;\n\n  const mapLeaf = (leaf: PlDataTableFilterSpecLeaf): Nil | PlDataTableFilterSpecLeaf => {\n    if (leaf.type === undefined) return leaf;\n    const result = { ...leaf };\n    if (\"column\" in result) {\n      const c = resolver(result.column);\n      if (isNil(c)) {\n        console.warn(\n          `Filter column ${JSON.stringify(result.column)} does not match any discovered column — dropped.`,\n        );\n        return undefined;\n      }\n      result.column = c;\n    }\n    if (\"rhs\" in result) {\n      const c = resolver(result.rhs);\n      if (isNil(c)) {\n        console.warn(\n          `Filter rhs ${JSON.stringify(result.rhs)} does not match any discovered column — dropped.`,\n        );\n        return undefined;\n      }\n      result.rhs = c;\n    }\n    return result;\n  };\n\n  const prune = (node: PlDataTableFilterNode): Nil | PlDataTableFilterNode => {\n    if (node.type === \"and\" || node.type === \"or\") {\n      const kept = node.filters\n        .map((f) => prune(f))\n        .filter((f): f is PlDataTableFilterNode => !isNil(f));\n      if (kept.length === 0) return undefined;\n      return { type: node.type, filters: kept };\n    }\n    if (node.type === \"not\") {\n      const inner = prune(node.filter);\n      return isNil(inner) ? undefined : { type: \"not\", filter: inner };\n    }\n    return mapLeaf(node);\n  };\n\n  return prune(filters) as Nil | PlDataTableFilters;\n}\n\nconst _ = [\n  {\n    type: \"column\",\n    id: '{\"__isRef\":true,\"blockId\":\"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\",\"name\":\"clusters.assign.clusterLabel\"}',\n    spec: {\n      kind: \"PColumn\",\n      axesSpec: [\n        {\n          name: \"pl7.app/vdj/clonotypeKey\",\n          type: \"String\",\n          domain: {\n            \"pl7.app/redefined-by\": \"aabfc81f-0fc9-4699-84e8-6e749a3e384d\",\n            \"pl7.app/vdj/chain\": \"IGHeavy\",\n            \"pl7.app/vdj/clonotypeKey/structure\":\n              '[[\"pl7.app/vdj/sequence\",[\"pl7.app/alphabet\",\"aminoacid\"],[\"pl7.app/vdj/feature\",\"VDJRegion\"]]]',\n            \"pl7.app/vdj/clonotypingRunId\": \"6cfab875-649e-4c52-bb69-fe976c2b57a0\",\n          },\n          annotations: {\n            \"pl7.app/label\": \"Clonotype ID\",\n            \"pl7.app/segmentedBy\": '[\"pl7.app/vdj/clonotypingRunId\"]',\n            \"pl7.app/table/fontFamily\": \"monospace\",\n            \"pl7.app/table/orderPriority\": \"110000\",\n            \"pl7.app/table/visibility\": \"default\",\n          },\n        },\n      ],\n      name: \"pl7.app/clusterId\",\n      valueType: \"String\",\n      domain: {\n        \"pl7.app/clustering/algorithm\": \"foldseek\",\n        \"pl7.app/clustering/blockId\": \"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\",\n      },\n      annotations: {\n        \"pl7.app/label\": \"Cluster Id\",\n        \"pl7.app/structure/clusteringSource\": \"foldseek\",\n        \"pl7.app/trace\":\n          '[{\"type\":\"milaboratories.samples-and-data\",\"id\":\"0189e23b-5e8d-4648-8c6d-70caa5c26958\",\"importance\":10,\"label\":\"Samples & Data\"},{\"type\":\"milaboratories.samples-and-data/dataset\",\"id\":\"34U3GEP5PGJF45UG3A2WZ3JO\",\"importance\":100,\"label\":\"MB135 + Podocytes\"},{\"label\":\"MiXCR generic amplicon\",\"type\":\"milaboratories.mixcr-amplicon-alignment\",\"id\":\"6cfab875-649e-4c52-bb69-fe976c2b57a0\",\"importance\":20},{\"type\":\"milaboratories.redefine-clonotypes\",\"importance\":30,\"label\":\"Imputed VDJRegion aa\"},{\"type\":\"milaboratories.antibody-tcr-lead-selection\",\"importance\":30,\"label\":\"Selected Leads\"},{\"type\":\"milaboratories.3d-structure-prediction\",\"id\":\"d204391a-e7dd-434d-9c24-ef77b5da81e0\",\"importance\":20,\"label\":\"Camelid (VHH/nanobody) NBB2, CDRH3 ≤ 2.5 Å\"},{\"type\":\"milaboratories.3d-structure-clustering.clustering\",\"id\":\"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\",\"importance\":30,\"label\":\"Full Structure+AA, TM≥0.95, cov≥0.95\"}]',\n      },\n    },\n  },\n  {\n    type: \"column\",\n    id: '{\"__isDiscovered\":true,\"column\":\"{\\\\\"__isRef\\\\\":true,\\\\\"blockId\\\\\":\\\\\"440a489a-8ae8-4982-9d1e-6297e7b8b8d0\\\\\",\\\\\"name\\\\\":\\\\\"pf.clusterLabel4\\\\\"}\",\"path\":[{\"column\":\"{\\\\\"__isRef\\\\\":true,\\\\\"blockId\\\\\":\\\\\"440a489a-8ae8-4982-9d1e-6297e7b8b8d0\\\\\",\\\\\"name\\\\\":\\\\\"pf.link3\\\\\"}\",\"type\":\"linker\"}]}',\n    spec: {\n      kind: \"PColumn\",\n      axesSpec: [\n        {\n          name: \"pl7.app/clusterId\",\n          type: \"String\",\n          domain: {\n            \"pl7.app/clustering/algorithm\": \"mmseqs2\",\n            \"pl7.app/clustering/blockId\": \"440a489a-8ae8-4982-9d1e-6297e7b8b8d0\",\n            \"pl7.app/redefined-by\": \"aabfc81f-0fc9-4699-84e8-6e749a3e384d\",\n            \"pl7.app/vdj/chain\": \"IGHeavy\",\n            \"pl7.app/vdj/clonotypeKey/structure\":\n              '[[\"pl7.app/vdj/sequence\",[\"pl7.app/alphabet\",\"aminoacid\"],[\"pl7.app/vdj/feature\",\"VDJRegion\"]]]',\n            \"pl7.app/vdj/clonotypingRunId\": \"6cfab875-649e-4c52-bb69-fe976c2b57a0\",\n          },\n          annotations: {\n            \"pl7.app/label\": \"Cluster Id\",\n            \"pl7.app/table/orderPriority\": \"990000\",\n            \"pl7.app/table/visibility\": \"default\",\n          },\n        },\n      ],\n      name: \"pl7.app/label\",\n      valueType: \"String\",\n      annotations: {\n        \"pl7.app/label\": \"Cluster Id\",\n        \"pl7.app/table/visibility\": \"default\",\n        \"pl7.app/trace\":\n          '[{\"importance\":10,\"label\":\"Samples & Data\",\"type\":\"milaboratories.samples-and-data\",\"id\":\"0189e23b-5e8d-4648-8c6d-70caa5c26958\"},{\"id\":\"34U3GEP5PGJF45UG3A2WZ3JO\",\"importance\":100,\"label\":\"MB135 + Podocytes\",\"type\":\"milaboratories.samples-and-data/dataset\"},{\"label\":\"MiXCR generic amplicon\",\"type\":\"milaboratories.mixcr-amplicon-alignment\",\"id\":\"6cfab875-649e-4c52-bb69-fe976c2b57a0\",\"importance\":20},{\"type\":\"milaboratories.redefine-clonotypes\",\"importance\":30,\"label\":\"Imputed VDJRegion aa\"},{\"type\":\"milaboratories.clonotype-clustering.clustering\",\"importance\":30,\"label\":\"Imputed VDJRegion aa, BLOSUM62, ident:0.95, cov:0.95\"}]',\n      },\n    },\n  },\n  {\n    type: \"column\",\n    id: '{\"__isDiscovered\":true,\"column\":\"{\\\\\"__isRef\\\\\":true,\\\\\"blockId\\\\\":\\\\\"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\\\\\",\\\\\"name\\\\\":\\\\\"clusters.summary.clusterLabel\\\\\"}\",\"path\":[{\"column\":\"{\\\\\"__isRef\\\\\":true,\\\\\"blockId\\\\\":\\\\\"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\\\\\",\\\\\"name\\\\\":\\\\\"clusters.link.isCentroid\\\\\"}\",\"type\":\"linker\"}]}',\n    spec: {\n      kind: \"PColumn\",\n      axesSpec: [\n        {\n          name: \"pl7.app/clusterId\",\n          type: \"String\",\n          domain: {\n            \"pl7.app/clustering/algorithm\": \"foldseek\",\n            \"pl7.app/clustering/blockId\": \"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\",\n          },\n          annotations: {\n            \"pl7.app/label\": \"Cluster Id\",\n            \"pl7.app/table/orderPriority\": \"990000\",\n            \"pl7.app/table/visibility\": \"default\",\n          },\n        },\n      ],\n      name: \"pl7.app/label\",\n      valueType: \"String\",\n      annotations: {\n        \"pl7.app/label\": \"Cluster Id\",\n        \"pl7.app/table/orderPriority\": \"990000\",\n        \"pl7.app/table/visibility\": \"default\",\n        \"pl7.app/trace\":\n          '[{\"type\":\"milaboratories.samples-and-data\",\"id\":\"0189e23b-5e8d-4648-8c6d-70caa5c26958\",\"importance\":10,\"label\":\"Samples & Data\"},{\"type\":\"milaboratories.samples-and-data/dataset\",\"id\":\"34U3GEP5PGJF45UG3A2WZ3JO\",\"importance\":100,\"label\":\"MB135 + Podocytes\"},{\"label\":\"MiXCR generic amplicon\",\"type\":\"milaboratories.mixcr-amplicon-alignment\",\"id\":\"6cfab875-649e-4c52-bb69-fe976c2b57a0\",\"importance\":20},{\"type\":\"milaboratories.redefine-clonotypes\",\"importance\":30,\"label\":\"Imputed VDJRegion aa\"},{\"type\":\"milaboratories.antibody-tcr-lead-selection\",\"importance\":30,\"label\":\"Selected Leads\"},{\"type\":\"milaboratories.3d-structure-prediction\",\"id\":\"d204391a-e7dd-434d-9c24-ef77b5da81e0\",\"importance\":20,\"label\":\"Camelid (VHH/nanobody) NBB2, CDRH3 ≤ 2.5 Å\"},{\"type\":\"milaboratories.3d-structure-clustering.clustering\",\"id\":\"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07\",\"importance\":30,\"label\":\"Full Structure+AA, TM≥0.95, cov≥0.95\"}]',\n      },\n    },\n  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Higher priority = further left. First matching rule wins. */\n  ordering?: ColumnOrderRule[];\n  /** Column visibility rules. First matching rule wins. Unmatched columns use default visibility. */\n  visibility?: ColumnVisibilityRule[];\n};\n\nexport type ColumnOrderRule = {\n  match: ColumnSelector;\n  /** Higher number = further left in table */\n  priority: number;\n};\n\nexport type ColumnVisibilityRule = {\n  match: ColumnSelector;\n  visibility: \"default\" | \"optional\" | \"hidden\";\n};\n\nexport function createPlDataTableV3<A, U>(\n  ctx: RenderCtxBase<A, U>,\n  options: createPlDataTableOptionsV3,\n): PlDataTableModel | undefined {\n  const state = upgradePlDataTableStateV2(options.tableState);\n  const primaryJoinType = options.primaryJoinType ?? \"full\";\n\n  const resolved = resolveInputColumns(ctx, options);\n  if (resolved === undefined) return undefined;\n  const { primary, secondary } = resolved;\n  if (primary.length === 0) return undefined;\n\n  const { direct, linked } = splitByTopology(secondary);\n\n  const allColumns = [...primary, ...secondary];\n  const derivedLabels = deriveAllLabels({\n    // Skip hidden columns when deriving labels — they don't appear in the\n    // table, so they shouldn't influence label disambiguation (#1623).\n    columns: allColumns.filter((c) => !isColumnHidden(c.getSpec())).map(toLabelableColumn),\n    deriveLabelsOptions: {\n      includeNativeLabel: true,\n      ...options.labelsOptions,\n    },\n  });\n\n  // Rule-based visibility/order maps (keyed by bare PObjectId). Computed once\n  // here: `computeHiddenColumns` needs visibility to decide the visible set,\n  // and `buildColumnsMeta` (below, once the visible set is known) reuses both.\n  const allColumnsForRules = [...primary, ...direct, ...linked, ...collectLinkerSnapshots(linked)];\n  const visibilityByColId = evaluateRules(\n    options.displayOptions?.visibility ?? [],\n    allColumnsForRules,\n  );\n  const orderByColId = evaluateRules(options.displayOptions?.ordering ?? [], allColumnsForRules);\n\n  const resolver = createColumnResolver(\n    [...primary, ...direct, ...linked.flatMap((lc) => [...collectLinkerColumns(lc), lc])],\n    { warn: ctx.logWarn.bind(ctx) },\n  );\n\n  const remapedDefaultFilters = remapFilterColumnIds(options.filters, resolver);\n  const filters = filterFilters(\n    concatFilters(\n      state.pTableParams.filters,\n      state.pTableParams.defaultFilters ?? remapedDefaultFilters,\n    ),\n    resolver,\n  );\n\n  const sorting = filterSorting(\n    resolveSorting(state.pTableParams.sorting, remapSortingColumnIds(options.sorting, resolver)),\n    resolver,\n  );\n\n  const fullDef = createPTableDefV3({\n    primaryJoinType,\n    primary,\n    secondary: [...direct, ...linked],\n    filters,\n    sorting,\n  });\n\n  const fullHandle = ctx.createPTableV2(fullDef);\n  // TODO: is workaround for dropdown suggestions.\n  // Pframe have not equivalent data for columns relativly to Ptable.\n  // PFrame is the physical column registry — one entry per bare PObjectId,\n  // so strip the rich recipe ids down to their physical leaf id and dedupe:\n  // multiple discovered variants of the same hit collapse to the same bare id.\n  const pframeHandle = ctx.createPFrame(\n    uniq([\n      ...primary.map((v) => extractPObjectId(v.id)),\n      ...direct.map((v) => extractPObjectId(v.id)),\n      ...linked.map((v) => extractPObjectId(v.id)),\n    ]),\n  );\n\n  const hiddenSpecs = state.pTableParams.hiddenColIds;\n  const hiddenColumnIds = computeHiddenColumns({\n    columns: [...primary, ...direct, ...linked],\n    visibilityByColId,\n    sorting,\n    filters,\n    hiddenSpecs,\n  });\n\n  const visible = {\n    primary,\n    direct: direct.filter((c) => !hiddenColumnIds.has(c.id)),\n    linked: linked.filter((c) => !hiddenColumnIds.has(c.id)),\n  };\n  const visibleDef = createPTableDefV3({\n    primaryJoinType,\n    primary,\n    secondary: [...visible.direct, ...visible.linked],\n    filters,\n    sorting,\n  });\n  const visibleHandle = ctx.createPTableV2(visibleDef);\n\n  // Built here, where the visible set is known: per-column data status is\n  // computed for visible columns only (the probe is meaningful only for what\n  // the user sees), while label/visibility/order/axes cover all columns.\n  const columnsMeta = buildColumnsMeta({\n    fullColumns: [...primary, ...direct, ...linked],\n    visibleColumns: [...visible.primary, ...visible.direct, ...visible.linked],\n    primaryColumns: primary,\n    derivedLabels,\n    visibilityByColId,\n    orderByColId,\n  });\n\n  return {\n    sourceId: state.pTableParams.sourceId,\n    fullTableHandle: fullHandle,\n    fullPframeHandle: pframeHandle,\n    visibleTableHandle: visibleHandle,\n    defaultFilters: remapedDefaultFilters,\n    columnsMeta,\n  } satisfies PlDataTableModel;\n}\n\ntype ResolvedColumns = {\n  readonly primary: ColumnRecipe[];\n  readonly secondary: ColumnRecipe[];\n};\n\n/** Normalize either option branch into a {primary, secondary} pair of recipes. */\nfunction resolveInputColumns<A, U>(\n  ctx: RenderCtxBase<A, U>,\n  options: createPlDataTableOptionsV3,\n): undefined | ResolvedColumns {\n  if (\"primaryColumns\" in options) {\n    const primary = options.primaryColumns;\n    const secondary = options.columns ?? [];\n    const labels = discoverLabelColumns(ctx, primary);\n    // Exclude from secondary anything already present in primary: a label\n    // column the block hands in as primary can be re-discovered here as a\n    // label for that same axis, landing in the table twice with the same id.\n    const primaryIds = new Set(primary.map((c) => c.id));\n    return {\n      primary,\n      secondary: dedupColumns(\n        [...secondary, ...labels].filter((c) => !primaryIds.has(c.id)),\n        (c) => c.id,\n        (c) => c.getSpec(),\n      ),\n    };\n  }\n\n  if (isPlainObject(options.columns)) {\n    return discoverTableColumns(ctx, options.columns);\n  }\n\n  return undefined;\n}\n\n/** Split secondary recipes by query topology: leaves (no linker chain) vs joined. */\nfunction splitByTopology(columns: ColumnRecipe[]): {\n  direct: ColumnRecipe[];\n  linked: ColumnRecipe[];\n} {\n  const direct: ColumnRecipe[] = [];\n  const linked: ColumnRecipe[] = [];\n  for (const c of columns) {\n    if (isLeafColumn(c)) direct.push(c);\n    else linked.push(c);\n  }\n  return { direct, linked };\n}\n\n/** All linker recipes across the given linked columns, deduped by id. */\nfunction collectLinkerSnapshots(linked: ColumnRecipe[]): ColumnRecipe[] {\n  return uniqueBy(\n    linked.flatMap((c) => collectLinkerColumns(c)),\n    (c) => c.id,\n  );\n}\n\nfunction toLabelableColumn(col: ColumnRecipe) {\n  return {\n    id: col.id,\n    spec: col.getSpec(),\n    linkerPath: collectLinkerColumns(col).map((linker) => ({\n      linker: { spec: linker.getSpec() },\n    })),\n    qualifications: {\n      forHit: [...hitQualifications(col)],\n      forQueries: queriesQualifications(col),\n    },\n  };\n}\n\n/**\n * Compute display metadata as a sidecar keyed by each emitted column's\n * `ColumnUniversalId` (and axis `AxisId`), instead of baking it into the specs\n * via `withSpecs`. Spec overrides change a recipe's id, so the same physical\n * column reached two ways would diverge into two ids and render twice; keeping\n * meta out of the spec preserves identity and lets dedup collapse such cases.\n * The UI overlays this onto the engine-emitted specs at render time.\n */\nfunction buildColumnsMeta(params: {\n  /** Every column in the table (primary + secondary) — drives `columns` and `axes`. */\n  fullColumns: ColumnRecipe[];\n  /** The visible subset — `status` is probed for these only. */\n  visibleColumns: ColumnRecipe[];\n  /** The primary join columns — their axes are the visible index; all other axes are hidden. */\n  primaryColumns: ColumnRecipe[];\n  derivedLabels: Record<string, string>;\n  visibilityByColId: Map<PObjectId, ColumnVisibilityRule>;\n  orderByColId: Map<PObjectId, ColumnOrderRule>;\n}): PlDataTableColumnsMeta {\n  const { fullColumns, visibleColumns, primaryColumns, derivedLabels } = params;\n  const { visibilityByColId, orderByColId } = params;\n  // Status only for visible columns — the probe is meaningful only for what the\n  // user actually sees; non-visible columns get no `status`.\n  const visibleStatus = buildDataStatusMap(visibleColumns);\n\n  const columns = fullColumns.reduce<PlDataTableColumnsMeta[\"columns\"]>((acc, c) => {\n    const rc = toRuleColumn(c);\n    acc[c.id] = {\n      label: derivedLabels[c.id],\n      visibility: getEffectiveVisibility(rc, visibilityByColId),\n      order: getOrderPriority(rc, orderByColId),\n      status: visibleStatus[c.id],\n    };\n    return acc;\n  }, {});\n\n  // Only primary columns declare the table's visible axes. Any axis introduced\n  // solely by a secondary column (a linker-bridge axis, or a distinct-domain\n  // copy) is flagged hidden — otherwise it renders as a second index axis.\n  const primaryAxisKeys = new Set(\n    primaryColumns.flatMap((c) => c.getSpec().axesSpec.map((a) => canonicalizeAxisId(a))),\n  );\n  const axes = fullColumns.reduce<PlDataTableColumnsMeta[\"axes\"]>(\n    (acc, c) =>\n      c.getSpec().axesSpec.reduce((inner, ax) => {\n        const key = canonicalizeAxisId(ax);\n        if (inner[key] === undefined) inner[key] = { hidden: !primaryAxisKeys.has(key) };\n        return inner;\n      }, acc),\n    {},\n  );\n\n  return { columns, axes };\n}\n\n/** Drop filter leaves whose column references cannot be resolved; rewrite the\n *  resolvable ones through the resolver. Prune empty and/or/not groups. */\nfunction filterFilters(\n  filters: Nil | PlDataTableFilters,\n  resolver: ColumnResolver,\n): Nil | PlDataTableFilters {\n  if (isNil(filters)) return filters;\n\n  const rewriteLeaf = (leaf: PlDataTableFilterSpecLeaf): Nil | PlDataTableFilterSpecLeaf => {\n    if (leaf.type === undefined) return leaf;\n    const result = { ...leaf };\n    if (\"column\" in result) {\n      const c = resolver(result.column);\n      if (isNil(c)) return undefined;\n      result.column = c;\n    }\n    if (\"rhs\" in result) {\n      const c = resolver(result.rhs);\n      if (isNil(c)) return undefined;\n      result.rhs = c;\n    }\n    return result;\n  };\n\n  const prune = (node: PlDataTableFilterNode): Nil | PlDataTableFilterNode => {\n    if (node.type === \"and\" || node.type === \"or\") {\n      const kept = node.filters\n        .map((f) => prune(f))\n        .filter((f): f is PlDataTableFilterNode => !isNil(f));\n      if (kept.length === 0) return undefined;\n      return { type: node.type, filters: kept };\n    }\n    if (node.type === \"not\") {\n      const inner = prune(node.filter);\n      return isNil(inner) ? undefined : { type: \"not\", filter: inner };\n    }\n    return rewriteLeaf(node);\n  };\n\n  return prune(filters) as Nil | PlDataTableFilters;\n}\n\n/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil.\n *  Exported for unit testing. */\nexport function concatFilters(\n  a: Nil | PlDataTableFilters,\n  b: Nil | PlDataTableFilters,\n): Nil | PlDataTableFilters {\n  if (isNil(a)) return b;\n  if (isNil(b)) return a;\n  const operands = (f: PlDataTableFilters): PlDataTableFilterNode[] =>\n    f.type === \"and\" ? f.filters : [f as PlDataTableFilterNode];\n  return { type: \"and\", filters: [...operands(a), ...operands(b)] };\n}\n\n/** Pick user sorting from state if set, otherwise fall back to options default.\n *  null = user has not touched sorting → use default;\n *  [] = user has explicitly cleared sorting → no sorting (default ignored). */\nfunction resolveSorting(\n  userSorting: Nil | PTableSorting[],\n  defaultSorting: Nil | PTableSorting[],\n): PTableSorting[] {\n  return (isNil(userSorting) ? defaultSorting : userSorting) ?? [];\n}\n\n/** Rewrite sorting entries through the resolver; drop those that fail to resolve. */\nfunction filterSorting(sorting: PTableSorting[], resolver: ColumnResolver): PTableSorting[] {\n  return sorting.flatMap((s) => {\n    const col = resolver(s.column);\n    return isNil(col) ? [] : [{ ...s, column: col }];\n  });\n}\n\n/** Determine which columns should be hidden based on state or optional-column defaults.\n *  Keyed by the recipe's logical {@link ColumnUniversalId} (rich) — variants of\n *  the same physical column are independently visible/hidden. */\nfunction computeHiddenColumns(params: {\n  columns: ColumnRecipe[];\n  visibilityByColId: Map<PObjectId, ColumnVisibilityRule>;\n  sorting: Nil | PTableSorting[];\n  filters: Nil | PlDataTableFilters;\n  hiddenSpecs: Nil | PTableColumnId[];\n}): Set<ColumnUniversalId> {\n  const { columns, visibilityByColId, sorting, filters, hiddenSpecs } = params;\n  const visibilityOf = (c: ColumnRecipe) =>\n    getEffectiveVisibility(toRuleColumn(c), visibilityByColId);\n  const alwaysHidden = columns.filter((c) => visibilityOf(c) === \"hidden\").map((c) => c.id);\n  const optionalHidden = !isNil(hiddenSpecs)\n    ? hiddenSpecs.filter((s): s is PTableColumnIdColumn => s.type === \"column\").map((s) => s.id)\n    : columns.filter((c) => visibilityOf(c) === \"optional\").map((c) => c.id);\n  const initial = [...alwaysHidden, ...optionalHidden];\n  const preserved = collectPreservedColumnIds(sorting, filters);\n\n  return new Set(initial.filter((id) => !preserved.has(id)));\n}\n\n/** Collect IDs of columns that must remain visible (sorted, filtered). */\nfunction collectPreservedColumnIds(\n  sorting: Nil | PTableSorting[],\n  filters: Nil | PlDataTableFilters,\n): Set<ColumnUniversalId> {\n  const sortedIds = (sorting ?? [])\n    .map((s) => s.column)\n    .filter((c): c is PTableColumnIdColumn => c.type === \"column\")\n    .map((c) => c.id);\n\n  const filterIds = !isNil(filters)\n    ? collectFilterSpecColumns(filters).flatMap((c) => (c.type === \"column\" ? [c.id] : []))\n    : [];\n\n  return new Set<ColumnUniversalId>([...sortedIds, ...filterIds]);\n}\n\n/** Remap column references in sorting entries through the resolver.\n *  Unresolved entries are dropped with a warning (best-effort contract). */\nfunction remapSortingColumnIds(\n  sorting: Nil | PTableSorting[],\n  resolver: ColumnResolver,\n): Nil | PTableSorting[] {\n  return sorting?.flatMap((s) => {\n    const col = resolver(s.column);\n    if (isNil(col)) {\n      console.warn(\n        `Sorting column ${JSON.stringify(s.column)} does not match any discovered column — dropped.`,\n      );\n      return [];\n    }\n    return [{ ...s, column: col }];\n  });\n}\n\ntype PlDataTableFilterNode = FilterSpecNode<PlDataTableFilterSpecLeaf>;\n\n/** Remap column references in a filter tree through the resolver.\n *  Unresolved leaves are dropped with a warning; empty groups are pruned. */\nfunction remapFilterColumnIds(\n  filters: Nil | PlDataTableFilters,\n  resolver: ColumnResolver,\n): Nil | PlDataTableFilters {\n  if (isNil(filters)) return filters;\n\n  const mapLeaf = (leaf: PlDataTableFilterSpecLeaf): Nil | PlDataTableFilterSpecLeaf => {\n    if (leaf.type === undefined) return leaf;\n    const result = { ...leaf };\n    if (\"column\" in result) {\n      const c = resolver(result.column);\n      if (isNil(c)) {\n        console.warn(\n          `Filter column ${JSON.stringify(result.column)} does not match any discovered column — dropped.`,\n        );\n        return undefined;\n      }\n      result.column = c;\n    }\n    if (\"rhs\" in result) {\n      const c = resolver(result.rhs);\n      if (isNil(c)) {\n        console.warn(\n          `Filter rhs ${JSON.stringify(result.rhs)} does not match any discovered column — dropped.`,\n        );\n        return undefined;\n      }\n      result.rhs = c;\n    }\n    return result;\n  };\n\n  const prune = (node: PlDataTableFilterNode): Nil | PlDataTableFilterNode => {\n    if (node.type === \"and\" || node.type === \"or\") {\n      const kept = node.filters\n        .map((f) => prune(f))\n        .filter((f): f is PlDataTableFilterNode => !isNil(f));\n      if (kept.length === 0) return undefined;\n      return { type: node.type, filters: kept };\n    }\n    if (node.type === \"not\") {\n      const inner = prune(node.filter);\n      return isNil(inner) ? undefined : { type: \"not\", filter: inner };\n    }\n    return mapLeaf(node);\n  };\n\n  return prune(filters) as Nil | 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package/dist/package.cjs

@@ -1,5 +1,5 @@
 //#region package.json
-var version = "1.80.8";
+var version = "1.80.13";
 //#endregion
 Object.defineProperty(exports, "version", {
 	enumerable: true,

package/dist/package.js

@@ -1,5 +1,5 @@
 //#region package.json
-var version = "1.80.8";
+var version = "1.80.13";
 //#endregion
 export { version };
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-sdk/model",
-  "version": "1.80.8",
+  "version": "1.80.13",
   "description": "Platforma.bio SDK / Block Model",
   "files": [
     "./dist/**/*",
@@ -32,10 +32,10 @@
     "utility-types": "^3.11.0",
     "zod": "~3.25.76",
     "@milaboratories/helpers": "1.14.5",
-    "@milaboratories/pl-model-common": "1.47.2",
-    "@milaboratories/ptabler-expression-js": "1.2.36",
     "@milaboratories/pl-error-like": "1.12.10",
-    "@milaboratories/pl-model-middle-layer": "1.30.14"
+    "@milaboratories/pl-model-middle-layer": "1.30.15",
+    "@milaboratories/ptabler-expression-js": "1.2.37",
+    "@milaboratories/pl-model-common": "1.47.3"
   },
   "devDependencies": {
     "@vitest/coverage-istanbul": "^4.1.3",
@@ -43,9 +43,9 @@
     "typescript": "~5.9.3",
     "vitest": "^4.1.3",
     "@milaboratories/build-configs": "2.0.0",
-    "@milaboratories/columns-collection-driver": "0.2.2",
-    "@milaboratories/pf-driver": "1.8.3",
-    "@milaboratories/pf-spec-driver": "1.4.22",
+    "@milaboratories/columns-collection-driver": "0.2.3",
+    "@milaboratories/pf-driver": "1.8.5",
+    "@milaboratories/pf-spec-driver": "1.4.24",
     "@milaboratories/ts-configs": "1.3.1",
     "@milaboratories/ts-builder": "1.6.1"
   },

package/src/components/PlDataTable/createPlDataTable/createPlDataTableV3.test.ts

@@ -0,0 +1,61 @@
+import { describe, expect, test } from "vitest";
+import { concatFilters } from "./createPlDataTableV3";
+import type { PlDataTableFilters, PlDataTableFilterSpecLeaf } from "../typesV8";
+
+// concatFilters only inspects each operand's `.type` (and spreads `.filters` of
+// an "and" node), so the leaf payload is irrelevant — minimal shapes suffice.
+type Node = PlDataTableFilters | PlDataTableFilterSpecLeaf;
+
+const leaf = (id: string): PlDataTableFilterSpecLeaf =>
+  ({ type: "isNA", column: { type: "column", id } }) as unknown as PlDataTableFilterSpecLeaf;
+const and = (...filters: Node[]): PlDataTableFilters =>
+  ({ type: "and", filters }) as unknown as PlDataTableFilters;
+const or = (...filters: Node[]): PlDataTableFilters =>
+  ({ type: "or", filters }) as unknown as PlDataTableFilters;
+const not = (filter: Node): PlDataTableFilters =>
+  ({ type: "not", filter }) as unknown as PlDataTableFilters;
+
+describe("concatFilters", () => {
+  test("a nil operand returns the other side unchanged", () => {
+    const a = and(leaf("x"));
+    expect(concatFilters(null, a)).toBe(a);
+    expect(concatFilters(a, null)).toBe(a);
+    expect(concatFilters(null, null)).toBeNull();
+  });
+
+  test("two AND groups merge their children", () => {
+    expect(concatFilters(and(leaf("u1"), leaf("u2")), and(leaf("d1")))).toEqual(
+      and(leaf("u1"), leaf("u2"), leaf("d1")),
+    );
+  });
+
+  test("a bare leaf is combined as a single AND operand (no crash)", () => {
+    // Regression: a lone sheet-selection leaf used to throw on `[...a.filters]`.
+    expect(concatFilters(leaf("sheet"), and(leaf("d1"), leaf("d2")))).toEqual(
+      and(leaf("sheet"), leaf("d1"), leaf("d2")),
+    );
+    // ...and on either side.
+    expect(concatFilters(and(leaf("u1")), leaf("d"))).toEqual(and(leaf("u1"), leaf("d")));
+  });
+
+  test("an OR group is preserved as one operand, not flattened into AND", () => {
+    // Regression: old code kept type "or" (or spread the OR's children into the
+    // AND), turning "d1 OR d2" into "d1 AND d2".
+    expect(concatFilters(or(leaf("u1"), leaf("u2")), and(leaf("d1")))).toEqual(
+      and(or(leaf("u1"), leaf("u2")), leaf("d1")),
+    );
+    expect(concatFilters(and(leaf("u1")), or(leaf("d1"), leaf("d2")))).toEqual(
+      and(leaf("u1"), or(leaf("d1"), leaf("d2"))),
+    );
+  });
+
+  test("an empty AND group contributes nothing", () => {
+    expect(concatFilters(and(), and(leaf("d1")))).toEqual(and(leaf("d1")));
+    expect(concatFilters(and(leaf("u1")), and())).toEqual(and(leaf("u1")));
+  });
+
+  test("a NOT node is combined as a single operand (no crash)", () => {
+    const n = not(leaf("x"));
+    expect(concatFilters(n, and(leaf("d1")))).toEqual(and(n, leaf("d1")));
+  });
+});

package/src/components/PlDataTable/createPlDataTable/createPlDataTableV3.ts

@@ -386,14 +386,17 @@ function filterFilters(
   return prune(filters) as Nil | PlDataTableFilters;
 }
 
-/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil. */
-function concatFilters(
+/** Merge two filter trees into one AND-combined tree. Returns the non-nil one if the other is nil.
+ *  Exported for unit testing. */
+export function concatFilters(
   a: Nil | PlDataTableFilters,
   b: Nil | PlDataTableFilters,
 ): Nil | PlDataTableFilters {
   if (isNil(a)) return b;
   if (isNil(b)) return a;
-  return { ...a, filters: [...a.filters, ...b.filters] };
+  const operands = (f: PlDataTableFilters): PlDataTableFilterNode[] =>
+    f.type === "and" ? f.filters : [f as PlDataTableFilterNode];
+  return { type: "and", filters: [...operands(a), ...operands(b)] };
 }
 
 /** Pick user sorting from state if set, otherwise fall back to options default.
@@ -525,111 +528,3 @@ function remapFilterColumnIds(
 
   return prune(filters) as Nil | PlDataTableFilters;
 }
-
-const _ = [
-  {
-    type: "column",
-    id: '{"__isRef":true,"blockId":"6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07","name":"clusters.assign.clusterLabel"}',
-    spec: {
-      kind: "PColumn",
-      axesSpec: [
-        {
-          name: "pl7.app/vdj/clonotypeKey",
-          type: "String",
-          domain: {
-            "pl7.app/redefined-by": "aabfc81f-0fc9-4699-84e8-6e749a3e384d",
-            "pl7.app/vdj/chain": "IGHeavy",
-            "pl7.app/vdj/clonotypeKey/structure":
-              '[["pl7.app/vdj/sequence",["pl7.app/alphabet","aminoacid"],["pl7.app/vdj/feature","VDJRegion"]]]',
-            "pl7.app/vdj/clonotypingRunId": "6cfab875-649e-4c52-bb69-fe976c2b57a0",
-          },
-          annotations: {
-            "pl7.app/label": "Clonotype ID",
-            "pl7.app/segmentedBy": '["pl7.app/vdj/clonotypingRunId"]',
-            "pl7.app/table/fontFamily": "monospace",
-            "pl7.app/table/orderPriority": "110000",
-            "pl7.app/table/visibility": "default",
-          },
-        },
-      ],
-      name: "pl7.app/clusterId",
-      valueType: "String",
-      domain: {
-        "pl7.app/clustering/algorithm": "foldseek",
-        "pl7.app/clustering/blockId": "6b2ae9f7-526d-4fd9-8a28-c0e3756c0b07",
-      },
-      annotations: {
-        "pl7.app/label": "Cluster Id",
-        "pl7.app/structure/clusteringSource": "foldseek",
-        "pl7.app/trace":
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