@platforma-sdk/model 1.62.0 → 1.63.1

package/dist/components/PlMultiSequenceAlignment.cjs

@@ -4,7 +4,7 @@ let _milaboratories_pl_model_common = require("@milaboratories/pl-model-common")
 //#region src/components/PlMultiSequenceAlignment.ts
 function createRowSelectionColumn({ selection, columnId = (0, _milaboratories_pl_model_common.uniquePlId)(), label = "Selection marker", domain }) {
 	if (!selection?.axesSpec.length) return;
-	const data = selection.selectedKeys.filter((r) => r.every((v) => !(0, _milaboratories_pl_model_common.isPTableAbsent)(v))).map((r) => ({
+	const data = selection.selectedKeys.filter((r) => r.every((v) => v !== null)).map((r) => ({
 		key: r,
 		val: 1
 	}));

package/dist/components/PlMultiSequenceAlignment.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"PlMultiSequenceAlignment.cjs","names":["ValueType","PColumnName","Annotation"],"sources":["../../src/components/PlMultiSequenceAlignment.ts"],"sourcesContent":["import type {\n  PColumn,\n  PColumnIdAndSpec,\n  PColumnKey,\n  PColumnValues,\n  PObjectId,\n  PTableColumnId,\n} from \"@milaboratories/pl-model-common\";\nimport {\n  Annotation,\n  isPTableAbsent,\n  PColumnName,\n  stringifyJson,\n  uniquePlId,\n  ValueType,\n} from \"@milaboratories/pl-model-common\";\nimport type { PlSelectionModel } from \"./PlSelectionModel\";\n\nexport type PColumnPredicate = (column: PColumnIdAndSpec) => boolean | { default: boolean };\n\nexport interface PlMultiSequenceAlignmentSettings {\n  sequenceColumnIds?: PObjectId[];\n  labelColumnIds?: PTableColumnId[];\n  colorScheme: PlMultiSequenceAlignmentColorSchemeOption;\n  widgets: PlMultiSequenceAlignmentWidget[];\n  alignmentParams: {\n    gpo: number;\n    gpe: number;\n    tgpe: number;\n  };\n}\n\nexport type PlMultiSequenceAlignmentWidget = \"consensus\" | \"seqLogo\" | \"tree\" | \"legend\";\n\nexport interface PlMultiSequenceAlignmentModel extends Partial<PlMultiSequenceAlignmentSettings> {\n  version?: number;\n}\n\nexport type PlMultiSequenceAlignmentColorSchemeOption =\n  | { type: \"no-color\" }\n  | { type: \"chemical-properties\" }\n  | { type: \"markup\"; columnIds: PObjectId[] };\n\nexport function createRowSelectionColumn({\n  selection,\n  columnId = uniquePlId() as string as PObjectId,\n  label = \"Selection marker\",\n  domain,\n}: {\n  selection: PlSelectionModel | undefined;\n  columnId?: PObjectId;\n  label?: string;\n  domain?: Record<string, string>;\n}): PColumn<PColumnValues> | undefined {\n  if (!selection?.axesSpec.length) {\n    return;\n  }\n  const data: PColumnValues = selection.selectedKeys\n    .filter((r): r is PColumnKey => r.every((v) => !isPTableAbsent(v)))\n    .map((r) => ({ key: r, val: 1 }));\n  if (!data.length) {\n    return;\n  }\n  return {\n    id: columnId,\n    spec: {\n      kind: \"PColumn\",\n      valueType: ValueType.Int,\n      name: PColumnName.Table.RowSelection,\n      axesSpec: selection.axesSpec,\n      ...(domain && Object.keys(domain).length && { domain }),\n      annotations: {\n        [Annotation.Label]: label,\n        [Annotation.DiscreteValues]: stringifyJson([1]),\n      } satisfies Annotation,\n    },\n    data,\n  };\n}\n"],"mappings":";;;;AA2CA,SAAgB,yBAAyB,EACvC,WACA,4DAAuB,EACvB,QAAQ,oBACR,UAMqC;AACrC,KAAI,CAAC,WAAW,SAAS,OACvB;CAEF,MAAM,OAAsB,UAAU,aACnC,QAAQ,MAAuB,EAAE,OAAO,MAAM,qDAAgB,EAAE,CAAC,CAAC,CAClE,KAAK,OAAO;EAAE,KAAK;EAAG,KAAK;EAAG,EAAE;AACnC,KAAI,CAAC,KAAK,OACR;AAEF,QAAO;EACL,IAAI;EACJ,MAAM;GACJ,MAAM;GACN,WAAWA,0CAAU;GACrB,MAAMC,4CAAY,MAAM;GACxB,UAAU,UAAU;GACpB,GAAI,UAAU,OAAO,KAAK,OAAO,CAAC,UAAU,EAAE,QAAQ;GACtD,aAAa;KACVC,2CAAW,QAAQ;KACnBA,2CAAW,oEAA+B,CAAC,EAAE,CAAC;IAChD;GACF;EACD;EACD"}
+{"version":3,"file":"PlMultiSequenceAlignment.cjs","names":["ValueType","PColumnName","Annotation"],"sources":["../../src/components/PlMultiSequenceAlignment.ts"],"sourcesContent":["import type {\n  PColumn,\n  PColumnIdAndSpec,\n  PColumnKey,\n  PColumnValues,\n  PObjectId,\n  PTableColumnId,\n} from \"@milaboratories/pl-model-common\";\nimport {\n  Annotation,\n  PColumnName,\n  stringifyJson,\n  uniquePlId,\n  ValueType,\n} from \"@milaboratories/pl-model-common\";\nimport type { PlSelectionModel } from \"./PlSelectionModel\";\n\nexport type PColumnPredicate = (column: PColumnIdAndSpec) => boolean | { default: boolean };\n\nexport interface PlMultiSequenceAlignmentSettings {\n  sequenceColumnIds?: PObjectId[];\n  labelColumnIds?: PTableColumnId[];\n  colorScheme: PlMultiSequenceAlignmentColorSchemeOption;\n  widgets: PlMultiSequenceAlignmentWidget[];\n  alignmentParams: {\n    gpo: number;\n    gpe: number;\n    tgpe: number;\n  };\n}\n\nexport type PlMultiSequenceAlignmentWidget = \"consensus\" | \"seqLogo\" | \"tree\" | \"legend\";\n\nexport interface PlMultiSequenceAlignmentModel extends Partial<PlMultiSequenceAlignmentSettings> {\n  version?: number;\n}\n\nexport type PlMultiSequenceAlignmentColorSchemeOption =\n  | { type: \"no-color\" }\n  | { type: \"chemical-properties\" }\n  | { type: \"markup\"; columnIds: PObjectId[] };\n\nexport function createRowSelectionColumn({\n  selection,\n  columnId = uniquePlId() as string as PObjectId,\n  label = \"Selection marker\",\n  domain,\n}: {\n  selection: PlSelectionModel | undefined;\n  columnId?: PObjectId;\n  label?: string;\n  domain?: Record<string, string>;\n}): PColumn<PColumnValues> | undefined {\n  if (!selection?.axesSpec.length) {\n    return;\n  }\n  const data: PColumnValues = selection.selectedKeys\n    .filter((r): r is PColumnKey => r.every((v) => v !== null))\n    .map((r) => ({ key: r, val: 1 }));\n  if (!data.length) {\n    return;\n  }\n  return {\n    id: columnId,\n    spec: {\n      kind: \"PColumn\",\n      valueType: ValueType.Int,\n      name: PColumnName.Table.RowSelection,\n      axesSpec: selection.axesSpec,\n      ...(domain && Object.keys(domain).length && { domain }),\n      annotations: {\n        [Annotation.Label]: label,\n        [Annotation.DiscreteValues]: stringifyJson([1]),\n      } satisfies Annotation,\n    },\n    data,\n  };\n}\n"],"mappings":";;;;AA0CA,SAAgB,yBAAyB,EACvC,WACA,4DAAuB,EACvB,QAAQ,oBACR,UAMqC;AACrC,KAAI,CAAC,WAAW,SAAS,OACvB;CAEF,MAAM,OAAsB,UAAU,aACnC,QAAQ,MAAuB,EAAE,OAAO,MAAM,MAAM,KAAK,CAAC,CAC1D,KAAK,OAAO;EAAE,KAAK;EAAG,KAAK;EAAG,EAAE;AACnC,KAAI,CAAC,KAAK,OACR;AAEF,QAAO;EACL,IAAI;EACJ,MAAM;GACJ,MAAM;GACN,WAAWA,0CAAU;GACrB,MAAMC,4CAAY,MAAM;GACxB,UAAU,UAAU;GACpB,GAAI,UAAU,OAAO,KAAK,OAAO,CAAC,UAAU,EAAE,QAAQ;GACtD,aAAa;KACVC,2CAAW,QAAQ;KACnBA,2CAAW,oEAA+B,CAAC,EAAE,CAAC;IAChD;GACF;EACD;EACD"}

package/dist/components/PlMultiSequenceAlignment.js

@@ -1,9 +1,9 @@
-import { Annotation, PColumnName, ValueType, isPTableAbsent, stringifyJson, uniquePlId } from "@milaboratories/pl-model-common";
+import { Annotation, PColumnName, ValueType, stringifyJson, uniquePlId } from "@milaboratories/pl-model-common";
 
 //#region src/components/PlMultiSequenceAlignment.ts
 function createRowSelectionColumn({ selection, columnId = uniquePlId(), label = "Selection marker", domain }) {
 	if (!selection?.axesSpec.length) return;
-	const data = selection.selectedKeys.filter((r) => r.every((v) => !isPTableAbsent(v))).map((r) => ({
+	const data = selection.selectedKeys.filter((r) => r.every((v) => v !== null)).map((r) => ({
 		key: r,
 		val: 1
 	}));

package/dist/components/PlMultiSequenceAlignment.js.map

@@ -1 +1 @@
-{"version":3,"file":"PlMultiSequenceAlignment.js","names":[],"sources":["../../src/components/PlMultiSequenceAlignment.ts"],"sourcesContent":["import type {\n  PColumn,\n  PColumnIdAndSpec,\n  PColumnKey,\n  PColumnValues,\n  PObjectId,\n  PTableColumnId,\n} from \"@milaboratories/pl-model-common\";\nimport {\n  Annotation,\n  isPTableAbsent,\n  PColumnName,\n  stringifyJson,\n  uniquePlId,\n  ValueType,\n} from \"@milaboratories/pl-model-common\";\nimport type { PlSelectionModel } from \"./PlSelectionModel\";\n\nexport type PColumnPredicate = (column: PColumnIdAndSpec) => boolean | { default: boolean };\n\nexport interface PlMultiSequenceAlignmentSettings {\n  sequenceColumnIds?: PObjectId[];\n  labelColumnIds?: PTableColumnId[];\n  colorScheme: PlMultiSequenceAlignmentColorSchemeOption;\n  widgets: PlMultiSequenceAlignmentWidget[];\n  alignmentParams: {\n    gpo: number;\n    gpe: number;\n    tgpe: number;\n  };\n}\n\nexport type PlMultiSequenceAlignmentWidget = \"consensus\" | \"seqLogo\" | \"tree\" | \"legend\";\n\nexport interface PlMultiSequenceAlignmentModel extends Partial<PlMultiSequenceAlignmentSettings> {\n  version?: number;\n}\n\nexport type PlMultiSequenceAlignmentColorSchemeOption =\n  | { type: \"no-color\" }\n  | { type: \"chemical-properties\" }\n  | { type: \"markup\"; columnIds: PObjectId[] };\n\nexport function createRowSelectionColumn({\n  selection,\n  columnId = uniquePlId() as string as PObjectId,\n  label = \"Selection marker\",\n  domain,\n}: {\n  selection: PlSelectionModel | undefined;\n  columnId?: PObjectId;\n  label?: string;\n  domain?: Record<string, string>;\n}): PColumn<PColumnValues> | undefined {\n  if (!selection?.axesSpec.length) {\n    return;\n  }\n  const data: PColumnValues = selection.selectedKeys\n    .filter((r): r is PColumnKey => r.every((v) => !isPTableAbsent(v)))\n    .map((r) => ({ key: r, val: 1 }));\n  if (!data.length) {\n    return;\n  }\n  return {\n    id: columnId,\n    spec: {\n      kind: \"PColumn\",\n      valueType: ValueType.Int,\n      name: PColumnName.Table.RowSelection,\n      axesSpec: selection.axesSpec,\n      ...(domain && Object.keys(domain).length && { domain }),\n      annotations: {\n        [Annotation.Label]: label,\n        [Annotation.DiscreteValues]: stringifyJson([1]),\n      } satisfies Annotation,\n    },\n    data,\n  };\n}\n"],"mappings":";;;AA2CA,SAAgB,yBAAyB,EACvC,WACA,WAAW,YAAY,EACvB,QAAQ,oBACR,UAMqC;AACrC,KAAI,CAAC,WAAW,SAAS,OACvB;CAEF,MAAM,OAAsB,UAAU,aACnC,QAAQ,MAAuB,EAAE,OAAO,MAAM,CAAC,eAAe,EAAE,CAAC,CAAC,CAClE,KAAK,OAAO;EAAE,KAAK;EAAG,KAAK;EAAG,EAAE;AACnC,KAAI,CAAC,KAAK,OACR;AAEF,QAAO;EACL,IAAI;EACJ,MAAM;GACJ,MAAM;GACN,WAAW,UAAU;GACrB,MAAM,YAAY,MAAM;GACxB,UAAU,UAAU;GACpB,GAAI,UAAU,OAAO,KAAK,OAAO,CAAC,UAAU,EAAE,QAAQ;GACtD,aAAa;KACV,WAAW,QAAQ;KACnB,WAAW,iBAAiB,cAAc,CAAC,EAAE,CAAC;IAChD;GACF;EACD;EACD"}
+{"version":3,"file":"PlMultiSequenceAlignment.js","names":[],"sources":["../../src/components/PlMultiSequenceAlignment.ts"],"sourcesContent":["import type {\n  PColumn,\n  PColumnIdAndSpec,\n  PColumnKey,\n  PColumnValues,\n  PObjectId,\n  PTableColumnId,\n} from \"@milaboratories/pl-model-common\";\nimport {\n  Annotation,\n  PColumnName,\n  stringifyJson,\n  uniquePlId,\n  ValueType,\n} from \"@milaboratories/pl-model-common\";\nimport type { PlSelectionModel } from \"./PlSelectionModel\";\n\nexport type PColumnPredicate = (column: PColumnIdAndSpec) => boolean | { default: boolean };\n\nexport interface PlMultiSequenceAlignmentSettings {\n  sequenceColumnIds?: PObjectId[];\n  labelColumnIds?: PTableColumnId[];\n  colorScheme: PlMultiSequenceAlignmentColorSchemeOption;\n  widgets: PlMultiSequenceAlignmentWidget[];\n  alignmentParams: {\n    gpo: number;\n    gpe: number;\n    tgpe: number;\n  };\n}\n\nexport type PlMultiSequenceAlignmentWidget = \"consensus\" | \"seqLogo\" | \"tree\" | \"legend\";\n\nexport interface PlMultiSequenceAlignmentModel extends Partial<PlMultiSequenceAlignmentSettings> {\n  version?: number;\n}\n\nexport type PlMultiSequenceAlignmentColorSchemeOption =\n  | { type: \"no-color\" }\n  | { type: \"chemical-properties\" }\n  | { type: \"markup\"; columnIds: PObjectId[] };\n\nexport function createRowSelectionColumn({\n  selection,\n  columnId = uniquePlId() as string as PObjectId,\n  label = \"Selection marker\",\n  domain,\n}: {\n  selection: PlSelectionModel | undefined;\n  columnId?: PObjectId;\n  label?: string;\n  domain?: Record<string, string>;\n}): PColumn<PColumnValues> | undefined {\n  if (!selection?.axesSpec.length) {\n    return;\n  }\n  const data: PColumnValues = selection.selectedKeys\n    .filter((r): r is PColumnKey => r.every((v) => v !== null))\n    .map((r) => ({ key: r, val: 1 }));\n  if (!data.length) {\n    return;\n  }\n  return {\n    id: columnId,\n    spec: {\n      kind: \"PColumn\",\n      valueType: ValueType.Int,\n      name: PColumnName.Table.RowSelection,\n      axesSpec: selection.axesSpec,\n      ...(domain && Object.keys(domain).length && { domain }),\n      annotations: {\n        [Annotation.Label]: label,\n        [Annotation.DiscreteValues]: stringifyJson([1]),\n      } satisfies Annotation,\n    },\n    data,\n  };\n}\n"],"mappings":";;;AA0CA,SAAgB,yBAAyB,EACvC,WACA,WAAW,YAAY,EACvB,QAAQ,oBACR,UAMqC;AACrC,KAAI,CAAC,WAAW,SAAS,OACvB;CAEF,MAAM,OAAsB,UAAU,aACnC,QAAQ,MAAuB,EAAE,OAAO,MAAM,MAAM,KAAK,CAAC,CAC1D,KAAK,OAAO;EAAE,KAAK;EAAG,KAAK;EAAG,EAAE;AACnC,KAAI,CAAC,KAAK,OACR;AAEF,QAAO;EACL,IAAI;EACJ,MAAM;GACJ,MAAM;GACN,WAAW,UAAU;GACrB,MAAM,YAAY,MAAM;GACxB,UAAU,UAAU;GACpB,GAAI,UAAU,OAAO,KAAK,OAAO,CAAC,UAAU,EAAE,QAAQ;GACtD,aAAa;KACV,WAAW,QAAQ;KACnB,WAAW,iBAAiB,cAAc,CAAC,EAAE,CAAC;IAChD;GACF;EACD;EACD"}

package/dist/components/PlSelectionModel.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"PlSelectionModel.cjs","names":[],"sources":["../../src/components/PlSelectionModel.ts"],"sourcesContent":["import type { AxesSpec, PTableValueAxis } from \"@milaboratories/pl-model-common\";\n\n/** Key is a set of all axes values, which means it is unique across rows */\nexport type PTableKey = PTableValueAxis[];\n\n/**\n * Information on selected rows.\n * for selectedKeys = [[axis1Value, axis2Value, axis3Value], ...]\n * axesSpec would be [axis1Spec, axis2Spec, axis3Spec]\n */\nexport type PlSelectionModel = {\n  /** Specs for {@link AxisValue}'s in {@link PTableKey} */\n  axesSpec: AxesSpec;\n  /** Row keys (arrays of axes values) of selected rows */\n  selectedKeys: PTableKey[];\n};\n\nexport function createPlSelectionModel(): PlSelectionModel {\n  return {\n    axesSpec: [],\n    selectedKeys: [],\n  };\n}\n"],"mappings":";;AAiBA,SAAgB,yBAA2C;AACzD,QAAO;EACL,UAAU,EAAE;EACZ,cAAc,EAAE;EACjB"}
+{"version":3,"file":"PlSelectionModel.cjs","names":[],"sources":["../../src/components/PlSelectionModel.ts"],"sourcesContent":["import type { AxesSpec, PTableValueAxis } from \"@milaboratories/pl-model-common\";\n\n/** Key is a set of all axes values, which means it is unique across rows */\nexport type PTableKey = (PTableValueAxis | null)[];\n\n/**\n * Information on selected rows.\n * for selectedKeys = [[axis1Value, axis2Value, axis3Value], ...]\n * axesSpec would be [axis1Spec, axis2Spec, axis3Spec]\n */\nexport type PlSelectionModel = {\n  /** Specs for {@link AxisValue}'s in {@link PTableKey} */\n  axesSpec: AxesSpec;\n  /** Row keys (arrays of axes values) of selected rows */\n  selectedKeys: PTableKey[];\n};\n\nexport function createPlSelectionModel(): PlSelectionModel {\n  return {\n    axesSpec: [],\n    selectedKeys: [],\n  };\n}\n"],"mappings":";;AAiBA,SAAgB,yBAA2C;AACzD,QAAO;EACL,UAAU,EAAE;EACZ,cAAc,EAAE;EACjB"}

package/dist/components/PlSelectionModel.d.ts

@@ -2,7 +2,7 @@ import { AxesSpec, PTableValueAxis } from "@milaboratories/pl-model-common";
 
 //#region src/components/PlSelectionModel.d.ts
 /** Key is a set of all axes values, which means it is unique across rows */
-type PTableKey = PTableValueAxis[];
+type PTableKey = (PTableValueAxis | null)[];
 /**
  * Information on selected rows.
  * for selectedKeys = [[axis1Value, axis2Value, axis3Value], ...]

package/dist/components/PlSelectionModel.js.map

@@ -1 +1 @@
-{"version":3,"file":"PlSelectionModel.js","names":[],"sources":["../../src/components/PlSelectionModel.ts"],"sourcesContent":["import type { AxesSpec, PTableValueAxis } from \"@milaboratories/pl-model-common\";\n\n/** Key is a set of all axes values, which means it is unique across rows */\nexport type PTableKey = PTableValueAxis[];\n\n/**\n * Information on selected rows.\n * for selectedKeys = [[axis1Value, axis2Value, axis3Value], ...]\n * axesSpec would be [axis1Spec, axis2Spec, axis3Spec]\n */\nexport type PlSelectionModel = {\n  /** Specs for {@link AxisValue}'s in {@link PTableKey} */\n  axesSpec: AxesSpec;\n  /** Row keys (arrays of axes values) of selected rows */\n  selectedKeys: PTableKey[];\n};\n\nexport function createPlSelectionModel(): PlSelectionModel {\n  return {\n    axesSpec: [],\n    selectedKeys: [],\n  };\n}\n"],"mappings":";AAiBA,SAAgB,yBAA2C;AACzD,QAAO;EACL,UAAU,EAAE;EACZ,cAAc,EAAE;EACjB"}
+{"version":3,"file":"PlSelectionModel.js","names":[],"sources":["../../src/components/PlSelectionModel.ts"],"sourcesContent":["import type { AxesSpec, PTableValueAxis } from \"@milaboratories/pl-model-common\";\n\n/** Key is a set of all axes values, which means it is unique across rows */\nexport type PTableKey = (PTableValueAxis | null)[];\n\n/**\n * Information on selected rows.\n * for selectedKeys = [[axis1Value, axis2Value, axis3Value], ...]\n * axesSpec would be [axis1Spec, axis2Spec, axis3Spec]\n */\nexport type PlSelectionModel = {\n  /** Specs for {@link AxisValue}'s in {@link PTableKey} */\n  axesSpec: AxesSpec;\n  /** Row keys (arrays of axes values) of selected rows */\n  selectedKeys: PTableKey[];\n};\n\nexport function createPlSelectionModel(): PlSelectionModel {\n  return {\n    axesSpec: [],\n    selectedKeys: [],\n  };\n}\n"],"mappings":";AAiBA,SAAgB,yBAA2C;AACzD,QAAO;EACL,UAAU,EAAE;EACZ,cAAc,EAAE;EACjB"}

package/dist/package.cjs

@@ -1,6 +1,6 @@
 
 //#region package.json
-var version = "1.62.0";
+var version = "1.63.1";
 
 //#endregion
 Object.defineProperty(exports, 'version', {

package/dist/package.js

@@ -1,5 +1,5 @@
 //#region package.json
-var version = "1.62.0";
+var version = "1.63.1";
 
 //#endregion
 export { version };

package/dist/pframe_utils/index.cjs

@@ -6,13 +6,10 @@ let es_toolkit = require("es-toolkit");
 //#region src/pframe_utils/index.ts
 const UNIQUE_VALUES_LIMIT = 1e6;
 const sortValuesPredicate = (a, b) => a.label.localeCompare(b.label, "en", { numeric: true });
-function convertColumnData(type, response, absentValue = null) {
+function convertColumnData(type, response) {
 	if (type === "String") return response.data;
 	const res = new Array(response.data.length);
-	for (let i = 0; i < response.data.length; i++) res[i] = (0, _milaboratories_pl_model_common.pTableValue)(response, i, {
-		absent: absentValue,
-		na: null
-	});
+	for (let i = 0; i < response.data.length; i++) res[i] = (0, _milaboratories_pl_model_common.pTableValue)(response, i);
 	return res;
 }
 function createSearchFilter(columnId, substring) {

package/dist/pframe_utils/index.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"index.cjs","names":["PColumnName","Annotation"],"sources":["../../src/pframe_utils/index.ts"],"sourcesContent":["import { flatten, uniq } from \"es-toolkit\";\n\nimport type {\n  AxisSpec,\n  CalculateTableDataRequest,\n  PColumnSpec,\n  PFrameHandle,\n  PTableVector,\n  UniqueValuesRequest,\n  AxisId,\n  CanonicalizedJson,\n  FindColumnsRequest,\n  FindColumnsResponse,\n  FullPTableColumnData,\n  PColumnIdAndSpec,\n  PObjectId,\n  PTableRecordSingleValueFilterV2,\n  ValueType,\n} from \"@milaboratories/pl-model-common\";\nimport {\n  pTableValue,\n  Annotation,\n  canonicalizeAxisId,\n  getAxisId,\n  readAnnotation,\n  PColumnName,\n} from \"@milaboratories/pl-model-common\";\n\nexport * from \"./columns\";\n\n// Types\ntype PValue = string | number | null;\n\ntype SuggestionResponse = {\n  values: {\n    value: string;\n    label: string;\n  }[];\n  overflow: boolean;\n};\n\ntype SingleColumnData = {\n  axesData: Record<string, PValue[]>;\n  data: PValue[];\n};\n\ntype UniqueValuesResponse = {\n  values: string[];\n  overflow: boolean;\n};\n\ntype GetUniqueSourceValuesParams = {\n  columnId: PObjectId;\n  axisIdx?: number;\n  limit?: number;\n  searchQuery?: string;\n  searchQueryValue?: string;\n};\n\ntype GetAxisUniqueValuesParams = {\n  axisId: AxisId;\n  parentColumnIds: PObjectId[];\n  limit?: number;\n  filters?: PTableRecordSingleValueFilterV2[];\n};\n\ntype GetColumnsFullParams = {\n  selectedSources: PObjectId[];\n  strictlyCompatible: boolean;\n  types?: ValueType[];\n  names?: string[];\n  annotations?: FindColumnsRequest[\"columnFilter\"][\"annotationValue\"];\n  annotationsNotEmpty?: string[];\n};\n\n// Constants\nconst UNIQUE_VALUES_LIMIT = 1000000;\n\n// Helper functions\nconst sortValuesPredicate = (a: { label: string }, b: { label: string }) =>\n  a.label.localeCompare(b.label, \"en\", { numeric: true });\n\nfunction convertColumnData(\n  type: ValueType,\n  response: PTableVector,\n  absentValue: number | null = null,\n): PValue[] {\n  if (type === \"String\") {\n    return response.data as PValue[];\n  }\n  const res: PValue[] = new Array(response.data.length);\n  for (let i = 0; i < response.data.length; i++) {\n    res[i] = pTableValue(response, i, { absent: absentValue, na: null }) as PValue;\n  }\n  return res;\n}\n\nfunction createSearchFilter(\n  columnId: PObjectId,\n  substring: string,\n): PTableRecordSingleValueFilterV2 {\n  return {\n    type: \"bySingleColumnV2\",\n    column: {\n      type: \"column\",\n      id: columnId,\n    },\n    predicate: {\n      operator: \"StringIContains\",\n      substring,\n    },\n  };\n}\n\nfunction createAxisSearchFilter(\n  axisSpec: AxisSpec,\n  substring: string,\n): PTableRecordSingleValueFilterV2 {\n  return {\n    type: \"bySingleColumnV2\",\n    column: {\n      type: \"axis\",\n      id: {\n        type: axisSpec.type,\n        name: axisSpec.name,\n      },\n    },\n    predicate: {\n      operator: \"StringIContains\",\n      substring,\n    },\n  };\n}\n\nfunction mapValuesToSuggestions(values: string[]): { value: string; label: string }[] {\n  return values.map((v) => ({ value: String(v), label: String(v) })).sort(sortValuesPredicate);\n}\n\nfunction getPFrameDriver() {\n  if (typeof platforma === \"undefined\") {\n    throw new Error(\"Platforma instance is not available\");\n  }\n  if (typeof platforma.pFrameDriver === \"undefined\") {\n    throw new Error(\"PFrame driver is not available in the current Platforma instance\");\n  }\n  return platforma.pFrameDriver;\n}\n\n// Core functions\nexport async function getColumnSpecById(\n  handle: PFrameHandle,\n  id: PObjectId,\n): Promise<PColumnSpec | null> {\n  try {\n    const response = await getPFrameDriver().getColumnSpec(handle, id);\n    return response ?? null;\n  } catch (err) {\n    console.error(\"PFrame: get single column error\", err);\n    return null;\n  }\n}\n\nexport async function getSingleColumnData(\n  handle: PFrameHandle,\n  id: PObjectId,\n  filters: PTableRecordSingleValueFilterV2[] = [],\n): Promise<SingleColumnData> {\n  try {\n    const response: FullPTableColumnData[] = await getPFrameDriver().calculateTableData(handle, {\n      src: {\n        type: \"column\",\n        column: id,\n      },\n      filters,\n      sorting: [],\n    } as CalculateTableDataRequest<PObjectId>);\n\n    const axes = response.filter((item) => item.spec.type === \"axis\");\n    const columns = response.filter((item) => item.spec.type === \"column\");\n\n    return {\n      axesData: axes.reduce((res: Record<string, PValue[]>, item) => {\n        const id = getAxisId(item.spec.spec as AxisSpec);\n        res[canonicalizeAxisId(id)] = convertColumnData(id.type, item.data);\n        return res;\n      }, {}),\n      data: columns.length ? convertColumnData(columns[0].data.type, columns[0].data) : [],\n    };\n  } catch (err) {\n    console.error(\"PFrame: calculateTableData error\");\n    throw err;\n  }\n}\n\nexport async function getColumnUniqueValues(\n  handle: PFrameHandle,\n  id: PObjectId,\n  limit = UNIQUE_VALUES_LIMIT,\n  filters: PTableRecordSingleValueFilterV2[] = [],\n): Promise<UniqueValuesResponse> {\n  const request: UniqueValuesRequest = {\n    columnId: id,\n    filters,\n    limit,\n  };\n\n  try {\n    const response = await getPFrameDriver().getUniqueValues(handle, request);\n    if (response.overflow) {\n      console.warn(`More than ${limit} values for ${id} column`);\n    }\n    return {\n      values: Array.from(response.values.data as ArrayLike<unknown>).map(String),\n      overflow: response.overflow,\n    };\n  } catch (err) {\n    console.error(\"PFrame: getUniqueValues for column error\");\n    throw err;\n  }\n}\n\nexport async function getAxisUniqueValues(\n  handle: PFrameHandle,\n  params: GetAxisUniqueValuesParams,\n): Promise<UniqueValuesResponse> {\n  const { axisId, parentColumnIds, limit = UNIQUE_VALUES_LIMIT, filters = [] } = params;\n  const strAxisId = canonicalizeAxisId(axisId);\n\n  const parentsSpecs = (await Promise.all(parentColumnIds.map((p) => getColumnSpecById(handle, p))))\n    .flatMap((spec, i): [PObjectId, PColumnSpec][] =>\n      spec != null && spec.kind === \"PColumn\" ? [[parentColumnIds[i], spec]] : [],\n    )\n    .filter(([_, spec]) =>\n      spec.axesSpec.some((axisSpec) => canonicalizeAxisId(getAxisId(axisSpec)) === strAxisId),\n    );\n\n  if (parentsSpecs.length === 0) {\n    console.warn(\"Axis unique values requested without parent columns\");\n    return { values: [], overflow: false };\n  }\n\n  try {\n    const responses = await Promise.all(\n      parentsSpecs.map(([id]) =>\n        getPFrameDriver().getUniqueValues(handle, {\n          columnId: id,\n          axis: axisId,\n          filters,\n          limit,\n        }),\n      ),\n    );\n\n    const overflow = responses.some((r) => r.overflow);\n    return {\n      values: uniq(\n        flatten(responses.map((r) => Array.from(r.values.data as ArrayLike<unknown>).map(String))),\n      ),\n      overflow,\n    };\n  } catch (err) {\n    console.error(\"PFrame: getUniqueValues for axis error\", err);\n    return { values: [], overflow: false };\n  }\n}\n\nexport async function getRequestColumnsFromSelectedSources(\n  handle: PFrameHandle,\n  sources: PObjectId[],\n): Promise<AxisId[]> {\n  const result: AxisId[] = [];\n  for (const item of sources) {\n    const spec = await getColumnSpecById(handle, item);\n    if (spec?.kind === \"PColumn\") {\n      result.push(...spec.axesSpec.map((spec) => getAxisId(spec)));\n    }\n  }\n  return result;\n}\n\nexport async function getColumnsFull(\n  handle: PFrameHandle,\n  params: GetColumnsFullParams,\n): Promise<PColumnIdAndSpec[]> {\n  const { selectedSources, strictlyCompatible, types, names, annotations, annotationsNotEmpty } =\n    params;\n\n  try {\n    const request: FindColumnsRequest = {\n      columnFilter: {\n        type: types,\n        name: names,\n        annotationValue: annotations,\n        annotationPattern: annotationsNotEmpty?.reduce(\n          (res, v) => {\n            res[v] = \".+\";\n            return res;\n          },\n          {} as Record<string, string>,\n        ),\n      },\n      compatibleWith: await getRequestColumnsFromSelectedSources(handle, selectedSources),\n      strictlyCompatible,\n    };\n\n    const response: FindColumnsResponse = await getPFrameDriver().findColumns(handle, request);\n    return response.hits;\n  } catch (err) {\n    console.error(\"PFrame: findColumns error\");\n    throw err;\n  }\n}\n\nexport async function getColumnOrAxisValueLabelsId(\n  handle: PFrameHandle,\n  strAxisId: CanonicalizedJson<AxisId>,\n): Promise<PObjectId | undefined> {\n  const labelColumns = await getColumnsFull(handle, {\n    selectedSources: [],\n    strictlyCompatible: false,\n    names: [PColumnName.Label],\n  });\n\n  const labelColumn = labelColumns.find(({ spec }) => {\n    return spec && spec.axesSpec.length === 1 && canonicalizeAxisId(spec.axesSpec[0]) === strAxisId;\n  });\n\n  return labelColumn?.columnId;\n}\n\nfunction getDiscreteValuesFromAnnotation(columnSpec: PColumnSpec): undefined | SuggestionResponse {\n  const discreteValuesStr = readAnnotation(columnSpec, Annotation.DiscreteValues);\n  if (!discreteValuesStr) {\n    return undefined;\n  }\n\n  try {\n    const discreteValues: string[] = (JSON.parse(discreteValuesStr) as (string | number)[]).map(\n      (v) => String(v),\n    );\n    const values = discreteValues.map((v) => ({ value: v, label: v })).sort(sortValuesPredicate);\n    return { values, overflow: false };\n  } catch {\n    console.error(`Parsing error: discrete values annotation ${discreteValuesStr}`);\n    return undefined;\n  }\n}\n\nasync function getAxisValuesWithLabels(\n  handle: PFrameHandle,\n  params: {\n    columnId: PObjectId;\n    axisSpec: AxisSpec;\n    labelsColumnId: PObjectId | undefined;\n    limit?: number;\n    searchQuery?: string;\n    searchQueryValue?: string;\n  },\n): Promise<SuggestionResponse> {\n  const { columnId, axisSpec, labelsColumnId, limit, searchQuery, searchQueryValue } = params;\n  const strAxisId = canonicalizeAxisId(getAxisId(axisSpec));\n\n  let filters: PTableRecordSingleValueFilterV2[] = [];\n\n  if (labelsColumnId) {\n    if (searchQuery) {\n      filters = [createSearchFilter(labelsColumnId, searchQuery)];\n    }\n    if (searchQueryValue) {\n      filters = [createAxisSearchFilter(axisSpec, searchQueryValue)];\n    }\n\n    const { data: dataValues, axesData } = await getSingleColumnData(\n      handle,\n      labelsColumnId,\n      filters,\n    );\n    const axisKeys = axesData[strAxisId];\n    const values: { value: string; label: string }[] = [];\n\n    for (let i = 0; i < Math.min(axisKeys.length, limit ?? axisKeys.length); i++) {\n      values.push({ value: String(axisKeys[i]), label: String(dataValues[i]) });\n    }\n\n    values.sort(sortValuesPredicate);\n    return { values, overflow: !(limit === undefined || axisKeys.length < limit) };\n  } else {\n    const searchInLabelsOrValue = searchQuery ?? searchQueryValue;\n    if (searchInLabelsOrValue) {\n      filters = [createAxisSearchFilter(axisSpec, searchInLabelsOrValue)];\n    }\n\n    const response = await getAxisUniqueValues(handle, {\n      axisId: getAxisId(axisSpec),\n      parentColumnIds: [columnId],\n      limit,\n      filters,\n    });\n\n    const values = mapValuesToSuggestions(response.values);\n    return { values, overflow: response.overflow };\n  }\n}\n\nasync function getColumnValuesWithLabels(\n  handle: PFrameHandle,\n  params: {\n    columnId: PObjectId;\n    limit?: number;\n    searchQuery?: string;\n    searchQueryValue?: string;\n  },\n): Promise<SuggestionResponse> {\n  const { columnId, limit, searchQuery, searchQueryValue } = params;\n  const searchInLabelsOrValue = searchQuery ?? searchQueryValue;\n\n  const filters: PTableRecordSingleValueFilterV2[] = searchInLabelsOrValue\n    ? [createSearchFilter(columnId, searchInLabelsOrValue)]\n    : [];\n\n  const response = await getColumnUniqueValues(handle, columnId, limit, filters);\n  const values = mapValuesToSuggestions(response.values);\n  return { values, overflow: response.overflow };\n}\n\nexport async function getUniqueSourceValuesWithLabels(\n  handle: PFrameHandle,\n  params: GetUniqueSourceValuesParams,\n): Promise<SuggestionResponse> {\n  const { columnId, axisIdx, limit, searchQuery, searchQueryValue } = params;\n\n  const selectedSourceSpec = await getColumnSpecById(handle, columnId);\n  if (selectedSourceSpec == null || selectedSourceSpec.kind !== \"PColumn\") {\n    return { values: [], overflow: false };\n  }\n\n  // Try to get discrete values from annotation\n  const discreteValues = getDiscreteValuesFromAnnotation(selectedSourceSpec);\n  if (discreteValues != null) {\n    return discreteValues;\n  }\n\n  // Handle axis values\n  if (axisIdx != null) {\n    const axisSpec = 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+{"version":3,"file":"index.cjs","names":["PColumnName","Annotation"],"sources":["../../src/pframe_utils/index.ts"],"sourcesContent":["import { flatten, uniq } from \"es-toolkit\";\n\nimport type {\n  AxisSpec,\n  CalculateTableDataRequest,\n  PColumnSpec,\n  PFrameHandle,\n  PTableVector,\n  UniqueValuesRequest,\n  AxisId,\n  CanonicalizedJson,\n  FindColumnsRequest,\n  FindColumnsResponse,\n  FullPTableColumnData,\n  PColumnIdAndSpec,\n  PObjectId,\n  PTableRecordSingleValueFilterV2,\n  ValueType,\n} from \"@milaboratories/pl-model-common\";\nimport {\n  pTableValue,\n  Annotation,\n  canonicalizeAxisId,\n  getAxisId,\n  readAnnotation,\n  PColumnName,\n} from \"@milaboratories/pl-model-common\";\n\nexport * from \"./columns\";\n\n// Types\ntype PValue = string | number | null;\n\ntype SuggestionResponse = {\n  values: {\n    value: string;\n    label: string;\n  }[];\n  overflow: boolean;\n};\n\ntype SingleColumnData = {\n  axesData: Record<string, PValue[]>;\n  data: PValue[];\n};\n\ntype UniqueValuesResponse = {\n  values: string[];\n  overflow: boolean;\n};\n\ntype GetUniqueSourceValuesParams = {\n  columnId: PObjectId;\n  axisIdx?: number;\n  limit?: number;\n  searchQuery?: string;\n  searchQueryValue?: string;\n};\n\ntype GetAxisUniqueValuesParams = {\n  axisId: AxisId;\n  parentColumnIds: PObjectId[];\n  limit?: number;\n  filters?: PTableRecordSingleValueFilterV2[];\n};\n\ntype GetColumnsFullParams = {\n  selectedSources: PObjectId[];\n  strictlyCompatible: boolean;\n  types?: ValueType[];\n  names?: string[];\n  annotations?: FindColumnsRequest[\"columnFilter\"][\"annotationValue\"];\n  annotationsNotEmpty?: string[];\n};\n\n// Constants\nconst UNIQUE_VALUES_LIMIT = 1000000;\n\n// Helper functions\nconst sortValuesPredicate = (a: { label: string }, b: { label: string }) =>\n  a.label.localeCompare(b.label, \"en\", { numeric: true });\n\nfunction convertColumnData(type: ValueType, response: PTableVector): PValue[] {\n  if (type === \"String\") {\n    return response.data as PValue[];\n  }\n  const res: PValue[] = new Array(response.data.length);\n  for (let i = 0; i < response.data.length; i++) {\n    res[i] = pTableValue(response, i) as PValue;\n  }\n  return res;\n}\n\nfunction createSearchFilter(\n  columnId: PObjectId,\n  substring: string,\n): PTableRecordSingleValueFilterV2 {\n  return {\n    type: \"bySingleColumnV2\",\n    column: {\n      type: \"column\",\n      id: columnId,\n    },\n    predicate: {\n      operator: \"StringIContains\",\n      substring,\n    },\n  };\n}\n\nfunction createAxisSearchFilter(\n  axisSpec: AxisSpec,\n  substring: string,\n): PTableRecordSingleValueFilterV2 {\n  return {\n    type: \"bySingleColumnV2\",\n    column: {\n      type: \"axis\",\n      id: {\n        type: axisSpec.type,\n        name: axisSpec.name,\n      },\n    },\n    predicate: {\n      operator: \"StringIContains\",\n      substring,\n    },\n  };\n}\n\nfunction mapValuesToSuggestions(values: string[]): { value: string; label: string }[] {\n  return values.map((v) => ({ value: String(v), label: String(v) })).sort(sortValuesPredicate);\n}\n\nfunction getPFrameDriver() {\n  if (typeof platforma === \"undefined\") {\n    throw new Error(\"Platforma instance is not available\");\n  }\n  if (typeof platforma.pFrameDriver === \"undefined\") {\n    throw new Error(\"PFrame driver is not available in the current Platforma instance\");\n  }\n  return platforma.pFrameDriver;\n}\n\n// Core functions\nexport async function getColumnSpecById(\n  handle: PFrameHandle,\n  id: PObjectId,\n): Promise<PColumnSpec | null> {\n  try {\n    const response = await getPFrameDriver().getColumnSpec(handle, id);\n    return response ?? null;\n  } catch (err) {\n    console.error(\"PFrame: get single column error\", err);\n    return null;\n  }\n}\n\nexport async function getSingleColumnData(\n  handle: PFrameHandle,\n  id: PObjectId,\n  filters: PTableRecordSingleValueFilterV2[] = [],\n): Promise<SingleColumnData> {\n  try {\n    const response: FullPTableColumnData[] = await getPFrameDriver().calculateTableData(handle, {\n      src: {\n        type: \"column\",\n        column: id,\n      },\n      filters,\n      sorting: [],\n    } as CalculateTableDataRequest<PObjectId>);\n\n    const axes = response.filter((item) => item.spec.type === \"axis\");\n    const columns = response.filter((item) => item.spec.type === \"column\");\n\n    return {\n      axesData: axes.reduce((res: Record<string, PValue[]>, item) => {\n        const id = getAxisId(item.spec.spec as AxisSpec);\n        res[canonicalizeAxisId(id)] = convertColumnData(id.type, item.data);\n        return res;\n      }, {}),\n      data: columns.length ? convertColumnData(columns[0].data.type, columns[0].data) : [],\n    };\n  } catch (err) {\n    console.error(\"PFrame: calculateTableData error\");\n    throw err;\n  }\n}\n\nexport async function getColumnUniqueValues(\n  handle: PFrameHandle,\n  id: PObjectId,\n  limit = UNIQUE_VALUES_LIMIT,\n  filters: PTableRecordSingleValueFilterV2[] = [],\n): Promise<UniqueValuesResponse> {\n  const request: UniqueValuesRequest = {\n    columnId: id,\n    filters,\n    limit,\n  };\n\n  try {\n    const response = await getPFrameDriver().getUniqueValues(handle, request);\n    if (response.overflow) {\n      console.warn(`More than ${limit} values for ${id} column`);\n    }\n    return {\n      values: Array.from(response.values.data as ArrayLike<unknown>).map(String),\n      overflow: response.overflow,\n    };\n  } catch (err) {\n    console.error(\"PFrame: getUniqueValues for column error\");\n    throw err;\n  }\n}\n\nexport async function getAxisUniqueValues(\n  handle: PFrameHandle,\n  params: GetAxisUniqueValuesParams,\n): Promise<UniqueValuesResponse> {\n  const { axisId, parentColumnIds, limit = UNIQUE_VALUES_LIMIT, filters = [] } = params;\n  const strAxisId = canonicalizeAxisId(axisId);\n\n  const parentsSpecs = (await Promise.all(parentColumnIds.map((p) => getColumnSpecById(handle, p))))\n    .flatMap((spec, i): [PObjectId, PColumnSpec][] =>\n      spec != null && spec.kind === \"PColumn\" ? 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axisKeys.length); i++) {\n      values.push({ value: String(axisKeys[i]), label: String(dataValues[i]) });\n    }\n\n    values.sort(sortValuesPredicate);\n    return { values, overflow: !(limit === undefined || axisKeys.length < limit) };\n  } else {\n    const searchInLabelsOrValue = searchQuery ?? searchQueryValue;\n    if (searchInLabelsOrValue) {\n      filters = [createAxisSearchFilter(axisSpec, searchInLabelsOrValue)];\n    }\n\n    const response = await getAxisUniqueValues(handle, {\n      axisId: getAxisId(axisSpec),\n      parentColumnIds: [columnId],\n      limit,\n      filters,\n    });\n\n    const values = mapValuesToSuggestions(response.values);\n    return { values, overflow: response.overflow };\n  }\n}\n\nasync function getColumnValuesWithLabels(\n  handle: PFrameHandle,\n  params: {\n    columnId: PObjectId;\n    limit?: number;\n    searchQuery?: string;\n    searchQueryValue?: string;\n  },\n): Promise<SuggestionResponse> {\n  const { columnId, limit, searchQuery, searchQueryValue } = params;\n  const searchInLabelsOrValue = searchQuery ?? searchQueryValue;\n\n  const filters: PTableRecordSingleValueFilterV2[] = searchInLabelsOrValue\n    ? [createSearchFilter(columnId, searchInLabelsOrValue)]\n    : [];\n\n  const response = await getColumnUniqueValues(handle, columnId, limit, filters);\n  const values = mapValuesToSuggestions(response.values);\n  return { values, overflow: response.overflow };\n}\n\nexport async function getUniqueSourceValuesWithLabels(\n  handle: PFrameHandle,\n  params: GetUniqueSourceValuesParams,\n): Promise<SuggestionResponse> {\n  const { columnId, axisIdx, limit, searchQuery, searchQueryValue } = params;\n\n  const selectedSourceSpec = await getColumnSpecById(handle, columnId);\n  if (selectedSourceSpec == null || selectedSourceSpec.kind !== \"PColumn\") {\n    return { values: [], overflow: false };\n  }\n\n  // Try to get discrete values from annotation\n  const discreteValues = getDiscreteValuesFromAnnotation(selectedSourceSpec);\n  if (discreteValues != null) {\n    return discreteValues;\n  }\n\n  // Handle axis values\n  if (axisIdx != null) {\n    const axisSpec = selectedSourceSpec.axesSpec[axisIdx];\n    const strAxisId = canonicalizeAxisId(getAxisId(axisSpec));\n    const labelsColumnId = await getColumnOrAxisValueLabelsId(handle, strAxisId);\n\n    return getAxisValuesWithLabels(handle, {\n      columnId,\n      axisSpec,\n      labelsColumnId,\n      limit,\n      searchQuery,\n      searchQueryValue,\n    });\n  }\n\n  // Handle column values\n  return getColumnValuesWithLabels(handle, {\n    columnId,\n    limit,\n    searchQuery,\n    searchQueryValue,\n  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package/dist/pframe_utils/index.js

@@ -5,13 +5,10 @@ import { flatten, uniq } from "es-toolkit";
 //#region src/pframe_utils/index.ts
 const UNIQUE_VALUES_LIMIT = 1e6;
 const sortValuesPredicate = (a, b) => a.label.localeCompare(b.label, "en", { numeric: true });
-function convertColumnData(type, response, absentValue = null) {
+function convertColumnData(type, response) {
 	if (type === "String") return response.data;
 	const res = new Array(response.data.length);
-	for (let i = 0; i < response.data.length; i++) res[i] = pTableValue(response, i, {
-		absent: absentValue,
-		na: null
-	});
+	for (let i = 0; i < response.data.length; i++) res[i] = pTableValue(response, i);
 	return res;
 }
 function createSearchFilter(columnId, substring) {

package/dist/pframe_utils/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../src/pframe_utils/index.ts"],"sourcesContent":["import { flatten, uniq } from \"es-toolkit\";\n\nimport type {\n  AxisSpec,\n  CalculateTableDataRequest,\n  PColumnSpec,\n  PFrameHandle,\n  PTableVector,\n  UniqueValuesRequest,\n  AxisId,\n  CanonicalizedJson,\n  FindColumnsRequest,\n  FindColumnsResponse,\n  FullPTableColumnData,\n  PColumnIdAndSpec,\n  PObjectId,\n  PTableRecordSingleValueFilterV2,\n  ValueType,\n} from \"@milaboratories/pl-model-common\";\nimport {\n  pTableValue,\n  Annotation,\n  canonicalizeAxisId,\n  getAxisId,\n  readAnnotation,\n  PColumnName,\n} from \"@milaboratories/pl-model-common\";\n\nexport * from \"./columns\";\n\n// Types\ntype PValue = string | number | null;\n\ntype SuggestionResponse = {\n  values: {\n    value: string;\n    label: string;\n  }[];\n  overflow: boolean;\n};\n\ntype SingleColumnData = {\n  axesData: Record<string, PValue[]>;\n  data: PValue[];\n};\n\ntype UniqueValuesResponse = {\n  values: string[];\n  overflow: boolean;\n};\n\ntype GetUniqueSourceValuesParams = {\n  columnId: PObjectId;\n  axisIdx?: number;\n  limit?: number;\n  searchQuery?: string;\n  searchQueryValue?: string;\n};\n\ntype GetAxisUniqueValuesParams = {\n  axisId: AxisId;\n  parentColumnIds: PObjectId[];\n  limit?: number;\n  filters?: PTableRecordSingleValueFilterV2[];\n};\n\ntype GetColumnsFullParams = {\n  selectedSources: PObjectId[];\n  strictlyCompatible: boolean;\n  types?: ValueType[];\n  names?: string[];\n  annotations?: FindColumnsRequest[\"columnFilter\"][\"annotationValue\"];\n  annotationsNotEmpty?: string[];\n};\n\n// Constants\nconst UNIQUE_VALUES_LIMIT = 1000000;\n\n// Helper functions\nconst sortValuesPredicate = (a: { label: string }, b: { label: string }) =>\n  a.label.localeCompare(b.label, \"en\", { numeric: true });\n\nfunction convertColumnData(\n  type: ValueType,\n  response: PTableVector,\n  absentValue: number | null = null,\n): PValue[] {\n  if (type === \"String\") {\n    return response.data as PValue[];\n  }\n  const res: PValue[] = new Array(response.data.length);\n  for (let i = 0; i < response.data.length; i++) {\n    res[i] = pTableValue(response, i, { absent: absentValue, na: null }) as PValue;\n  }\n  return res;\n}\n\nfunction createSearchFilter(\n  columnId: PObjectId,\n  substring: string,\n): PTableRecordSingleValueFilterV2 {\n  return {\n    type: \"bySingleColumnV2\",\n    column: {\n      type: \"column\",\n      id: columnId,\n    },\n    predicate: {\n      operator: \"StringIContains\",\n      substring,\n    },\n  };\n}\n\nfunction createAxisSearchFilter(\n  axisSpec: AxisSpec,\n  substring: string,\n): PTableRecordSingleValueFilterV2 {\n  return {\n    type: \"bySingleColumnV2\",\n    column: {\n      type: \"axis\",\n      id: {\n        type: axisSpec.type,\n        name: axisSpec.name,\n      },\n    },\n    predicate: {\n      operator: \"StringIContains\",\n      substring,\n    },\n  };\n}\n\nfunction mapValuesToSuggestions(values: string[]): { value: string; label: string }[] {\n  return values.map((v) => ({ value: String(v), label: String(v) })).sort(sortValuesPredicate);\n}\n\nfunction getPFrameDriver() {\n  if (typeof platforma === \"undefined\") {\n    throw new Error(\"Platforma instance is not available\");\n  }\n  if (typeof platforma.pFrameDriver === \"undefined\") {\n    throw new Error(\"PFrame driver is not available in the current Platforma instance\");\n  }\n  return platforma.pFrameDriver;\n}\n\n// Core functions\nexport async function getColumnSpecById(\n  handle: PFrameHandle,\n  id: PObjectId,\n): Promise<PColumnSpec | null> {\n  try {\n    const response = await getPFrameDriver().getColumnSpec(handle, id);\n    return response ?? null;\n  } catch (err) {\n    console.error(\"PFrame: get single column error\", err);\n    return null;\n  }\n}\n\nexport async function getSingleColumnData(\n  handle: PFrameHandle,\n  id: PObjectId,\n  filters: PTableRecordSingleValueFilterV2[] = [],\n): Promise<SingleColumnData> {\n  try {\n    const response: FullPTableColumnData[] = await getPFrameDriver().calculateTableData(handle, {\n      src: {\n        type: \"column\",\n        column: id,\n      },\n      filters,\n      sorting: [],\n    } as CalculateTableDataRequest<PObjectId>);\n\n    const axes = response.filter((item) => item.spec.type === \"axis\");\n    const columns = response.filter((item) => item.spec.type === \"column\");\n\n    return {\n      axesData: axes.reduce((res: Record<string, PValue[]>, item) => {\n        const id = getAxisId(item.spec.spec as AxisSpec);\n        res[canonicalizeAxisId(id)] = convertColumnData(id.type, item.data);\n        return res;\n      }, {}),\n      data: columns.length ? convertColumnData(columns[0].data.type, columns[0].data) : [],\n    };\n  } catch (err) {\n    console.error(\"PFrame: calculateTableData error\");\n    throw err;\n  }\n}\n\nexport async function getColumnUniqueValues(\n  handle: PFrameHandle,\n  id: PObjectId,\n  limit = UNIQUE_VALUES_LIMIT,\n  filters: PTableRecordSingleValueFilterV2[] = [],\n): Promise<UniqueValuesResponse> {\n  const request: UniqueValuesRequest = {\n    columnId: id,\n    filters,\n    limit,\n  };\n\n  try {\n    const response = await getPFrameDriver().getUniqueValues(handle, request);\n    if (response.overflow) {\n      console.warn(`More than ${limit} values for ${id} column`);\n    }\n    return {\n      values: Array.from(response.values.data as ArrayLike<unknown>).map(String),\n      overflow: response.overflow,\n    };\n  } catch (err) {\n    console.error(\"PFrame: getUniqueValues for column error\");\n    throw err;\n  }\n}\n\nexport async function getAxisUniqueValues(\n  handle: PFrameHandle,\n  params: GetAxisUniqueValuesParams,\n): Promise<UniqueValuesResponse> {\n  const { axisId, parentColumnIds, limit = UNIQUE_VALUES_LIMIT, filters = [] } = params;\n  const strAxisId = canonicalizeAxisId(axisId);\n\n  const parentsSpecs = (await Promise.all(parentColumnIds.map((p) => getColumnSpecById(handle, p))))\n    .flatMap((spec, i): [PObjectId, PColumnSpec][] =>\n      spec != null && spec.kind === \"PColumn\" ? [[parentColumnIds[i], spec]] : [],\n    )\n    .filter(([_, spec]) =>\n      spec.axesSpec.some((axisSpec) => canonicalizeAxisId(getAxisId(axisSpec)) === strAxisId),\n    );\n\n  if (parentsSpecs.length === 0) {\n    console.warn(\"Axis unique values requested without parent columns\");\n    return { values: [], overflow: false };\n  }\n\n  try {\n    const responses = await Promise.all(\n      parentsSpecs.map(([id]) =>\n        getPFrameDriver().getUniqueValues(handle, {\n          columnId: id,\n          axis: axisId,\n          filters,\n          limit,\n        }),\n      ),\n    );\n\n    const overflow = responses.some((r) => r.overflow);\n    return {\n      values: uniq(\n        flatten(responses.map((r) => Array.from(r.values.data as ArrayLike<unknown>).map(String))),\n      ),\n      overflow,\n    };\n  } catch (err) {\n    console.error(\"PFrame: getUniqueValues for axis error\", err);\n    return { values: [], overflow: false };\n  }\n}\n\nexport async function getRequestColumnsFromSelectedSources(\n  handle: PFrameHandle,\n  sources: PObjectId[],\n): Promise<AxisId[]> {\n  const result: AxisId[] = [];\n  for (const item of sources) {\n    const spec = await getColumnSpecById(handle, item);\n    if (spec?.kind === \"PColumn\") {\n      result.push(...spec.axesSpec.map((spec) => getAxisId(spec)));\n    }\n  }\n  return result;\n}\n\nexport async function getColumnsFull(\n  handle: PFrameHandle,\n  params: GetColumnsFullParams,\n): Promise<PColumnIdAndSpec[]> {\n  const { selectedSources, strictlyCompatible, types, names, annotations, annotationsNotEmpty } =\n    params;\n\n  try {\n    const request: FindColumnsRequest = {\n      columnFilter: {\n        type: types,\n        name: names,\n        annotationValue: annotations,\n        annotationPattern: annotationsNotEmpty?.reduce(\n          (res, v) => {\n            res[v] = \".+\";\n            return res;\n          },\n          {} as Record<string, string>,\n        ),\n      },\n      compatibleWith: await getRequestColumnsFromSelectedSources(handle, selectedSources),\n      strictlyCompatible,\n    };\n\n    const response: FindColumnsResponse = await getPFrameDriver().findColumns(handle, request);\n    return response.hits;\n  } catch (err) {\n    console.error(\"PFrame: findColumns error\");\n    throw err;\n  }\n}\n\nexport async function getColumnOrAxisValueLabelsId(\n  handle: PFrameHandle,\n  strAxisId: CanonicalizedJson<AxisId>,\n): Promise<PObjectId | undefined> {\n  const labelColumns = await getColumnsFull(handle, {\n    selectedSources: [],\n    strictlyCompatible: false,\n    names: [PColumnName.Label],\n  });\n\n  const labelColumn = labelColumns.find(({ spec }) => {\n    return spec && spec.axesSpec.length === 1 && canonicalizeAxisId(spec.axesSpec[0]) === strAxisId;\n  });\n\n  return labelColumn?.columnId;\n}\n\nfunction getDiscreteValuesFromAnnotation(columnSpec: PColumnSpec): undefined | SuggestionResponse {\n  const discreteValuesStr = readAnnotation(columnSpec, Annotation.DiscreteValues);\n  if (!discreteValuesStr) {\n    return undefined;\n  }\n\n  try {\n    const discreteValues: string[] = (JSON.parse(discreteValuesStr) as (string | number)[]).map(\n      (v) => String(v),\n    );\n    const values = discreteValues.map((v) => ({ value: v, label: v })).sort(sortValuesPredicate);\n    return { values, overflow: false };\n  } catch {\n    console.error(`Parsing error: discrete values annotation ${discreteValuesStr}`);\n    return undefined;\n  }\n}\n\nasync function getAxisValuesWithLabels(\n  handle: PFrameHandle,\n  params: {\n    columnId: PObjectId;\n    axisSpec: AxisSpec;\n    labelsColumnId: PObjectId | undefined;\n    limit?: number;\n    searchQuery?: string;\n    searchQueryValue?: string;\n  },\n): Promise<SuggestionResponse> {\n  const { columnId, axisSpec, labelsColumnId, limit, searchQuery, searchQueryValue } = params;\n  const strAxisId = canonicalizeAxisId(getAxisId(axisSpec));\n\n  let filters: PTableRecordSingleValueFilterV2[] = [];\n\n  if (labelsColumnId) {\n    if (searchQuery) {\n      filters = [createSearchFilter(labelsColumnId, searchQuery)];\n    }\n    if (searchQueryValue) {\n      filters = [createAxisSearchFilter(axisSpec, searchQueryValue)];\n    }\n\n    const { data: dataValues, axesData } = await getSingleColumnData(\n      handle,\n      labelsColumnId,\n      filters,\n    );\n    const axisKeys = axesData[strAxisId];\n    const values: { value: string; label: string }[] = [];\n\n    for (let i = 0; i < Math.min(axisKeys.length, limit ?? axisKeys.length); i++) {\n      values.push({ value: String(axisKeys[i]), label: String(dataValues[i]) });\n    }\n\n    values.sort(sortValuesPredicate);\n    return { values, overflow: !(limit === undefined || axisKeys.length < limit) };\n  } else {\n    const searchInLabelsOrValue = searchQuery ?? searchQueryValue;\n    if (searchInLabelsOrValue) {\n      filters = [createAxisSearchFilter(axisSpec, searchInLabelsOrValue)];\n    }\n\n    const response = await getAxisUniqueValues(handle, {\n      axisId: getAxisId(axisSpec),\n      parentColumnIds: [columnId],\n      limit,\n      filters,\n    });\n\n    const values = mapValuesToSuggestions(response.values);\n    return { values, overflow: response.overflow };\n  }\n}\n\nasync function getColumnValuesWithLabels(\n  handle: PFrameHandle,\n  params: {\n    columnId: PObjectId;\n    limit?: number;\n    searchQuery?: string;\n    searchQueryValue?: string;\n  },\n): Promise<SuggestionResponse> {\n  const { columnId, limit, searchQuery, searchQueryValue } = params;\n  const searchInLabelsOrValue = searchQuery ?? 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null;\n  } catch (err) {\n    console.error(\"PFrame: get single column error\", err);\n    return null;\n  }\n}\n\nexport async function getSingleColumnData(\n  handle: PFrameHandle,\n  id: PObjectId,\n  filters: PTableRecordSingleValueFilterV2[] = [],\n): Promise<SingleColumnData> {\n  try {\n    const response: FullPTableColumnData[] = await getPFrameDriver().calculateTableData(handle, {\n      src: {\n        type: \"column\",\n        column: id,\n      },\n      filters,\n      sorting: [],\n    } as CalculateTableDataRequest<PObjectId>);\n\n    const axes = response.filter((item) => item.spec.type === \"axis\");\n    const columns = response.filter((item) => item.spec.type === \"column\");\n\n    return {\n      axesData: axes.reduce((res: Record<string, PValue[]>, item) => {\n        const id = getAxisId(item.spec.spec as AxisSpec);\n        res[canonicalizeAxisId(id)] = convertColumnData(id.type, item.data);\n        return res;\n      }, {}),\n      data: columns.length ? convertColumnData(columns[0].data.type, columns[0].data) : [],\n    };\n  } catch (err) {\n    console.error(\"PFrame: calculateTableData error\");\n    throw err;\n  }\n}\n\nexport async function getColumnUniqueValues(\n  handle: PFrameHandle,\n  id: PObjectId,\n  limit = UNIQUE_VALUES_LIMIT,\n  filters: PTableRecordSingleValueFilterV2[] = [],\n): Promise<UniqueValuesResponse> {\n  const request: UniqueValuesRequest = {\n    columnId: id,\n    filters,\n    limit,\n  };\n\n  try {\n    const response = await getPFrameDriver().getUniqueValues(handle, request);\n    if (response.overflow) {\n      console.warn(`More than ${limit} values for ${id} column`);\n    }\n    return {\n      values: Array.from(response.values.data as ArrayLike<unknown>).map(String),\n      overflow: response.overflow,\n    };\n  } catch (err) {\n    console.error(\"PFrame: getUniqueValues for column error\");\n    throw err;\n  }\n}\n\nexport async function getAxisUniqueValues(\n  handle: PFrameHandle,\n  params: GetAxisUniqueValuesParams,\n): Promise<UniqueValuesResponse> {\n  const { axisId, parentColumnIds, limit = UNIQUE_VALUES_LIMIT, filters = [] } = params;\n  const strAxisId = canonicalizeAxisId(axisId);\n\n  const parentsSpecs = (await Promise.all(parentColumnIds.map((p) => getColumnSpecById(handle, p))))\n    .flatMap((spec, i): [PObjectId, PColumnSpec][] =>\n      spec != null && spec.kind === \"PColumn\" ? 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axisKeys.length); i++) {\n      values.push({ value: String(axisKeys[i]), label: String(dataValues[i]) });\n    }\n\n    values.sort(sortValuesPredicate);\n    return { values, overflow: !(limit === undefined || axisKeys.length < limit) };\n  } else {\n    const searchInLabelsOrValue = searchQuery ?? searchQueryValue;\n    if (searchInLabelsOrValue) {\n      filters = [createAxisSearchFilter(axisSpec, searchInLabelsOrValue)];\n    }\n\n    const response = await getAxisUniqueValues(handle, {\n      axisId: getAxisId(axisSpec),\n      parentColumnIds: [columnId],\n      limit,\n      filters,\n    });\n\n    const values = mapValuesToSuggestions(response.values);\n    return { values, overflow: response.overflow };\n  }\n}\n\nasync function getColumnValuesWithLabels(\n  handle: PFrameHandle,\n  params: {\n    columnId: PObjectId;\n    limit?: number;\n    searchQuery?: string;\n    searchQueryValue?: string;\n  },\n): Promise<SuggestionResponse> {\n  const { columnId, limit, searchQuery, searchQueryValue } = params;\n  const searchInLabelsOrValue = searchQuery ?? 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selectedSourceSpec.axesSpec[axisIdx];\n    const strAxisId = canonicalizeAxisId(getAxisId(axisSpec));\n    const labelsColumnId = await getColumnOrAxisValueLabelsId(handle, strAxisId);\n\n    return getAxisValuesWithLabels(handle, {\n      columnId,\n      axisSpec,\n      labelsColumnId,\n      limit,\n      searchQuery,\n      searchQueryValue,\n    });\n  }\n\n  // Handle column values\n  return getColumnValuesWithLabels(handle, {\n    columnId,\n    limit,\n    searchQuery,\n    searchQueryValue,\n  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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-sdk/model",
-  "version": "1.62.0",
+  "version": "1.63.1",
   "description": "Platforma.bio SDK / Block Model",
   "files": [
     "./dist/**/*",
@@ -30,22 +30,22 @@
     "fast-json-patch": "^3.1.1",
     "utility-types": "^3.11.0",
     "zod": "~3.23.8",
-    "@milaboratories/helpers": "1.14.0",
-    "@milaboratories/pl-model-common": "1.30.0",
-    "@milaboratories/pl-model-middle-layer": "1.16.1",
+    "@milaboratories/helpers": "1.14.1",
     "@milaboratories/pl-error-like": "1.12.9",
-    "@milaboratories/ptabler-expression-js": "1.2.3"
+    "@milaboratories/pl-model-common": "1.31.1",
+    "@milaboratories/pl-model-middle-layer": "1.16.3",
+    "@milaboratories/ptabler-expression-js": "1.2.5"
   },
   "devDependencies": {
     "@vitest/coverage-istanbul": "^4.0.18",
     "fast-json-patch": "^3.1.1",
     "typescript": "~5.9.3",
     "vitest": "^4.0.18",
-    "@milaboratories/build-configs": "1.5.2",
-    "@milaboratories/pf-spec-driver": "1.2.0",
+    "@milaboratories/pf-spec-driver": "1.2.3",
     "@milaboratories/ts-builder": "1.3.0",
-    "@milaboratories/pf-driver": "1.3.0",
-    "@milaboratories/ts-configs": "1.2.2"
+    "@milaboratories/build-configs": "1.5.2",
+    "@milaboratories/ts-configs": "1.2.2",
+    "@milaboratories/pf-driver": "1.3.3"
   },
   "scripts": {
     "build": "ts-builder build --target node",

package/src/components/PlMultiSequenceAlignment.ts

@@ -8,7 +8,6 @@ import type {
 } from "@milaboratories/pl-model-common";
 import {
   Annotation,
-  isPTableAbsent,
   PColumnName,
   stringifyJson,
   uniquePlId,
@@ -56,7 +55,7 @@ export function createRowSelectionColumn({
     return;
   }
   const data: PColumnValues = selection.selectedKeys
-    .filter((r): r is PColumnKey => r.every((v) => !isPTableAbsent(v)))
+    .filter((r): r is PColumnKey => r.every((v) => v !== null))
     .map((r) => ({ key: r, val: 1 }));
   if (!data.length) {
     return;

package/src/components/PlSelectionModel.ts

@@ -1,7 +1,7 @@
 import type { AxesSpec, PTableValueAxis } from "@milaboratories/pl-model-common";
 
 /** Key is a set of all axes values, which means it is unique across rows */
-export type PTableKey = PTableValueAxis[];
+export type PTableKey = (PTableValueAxis | null)[];
 
 /**
  * Information on selected rows.

package/src/pframe_utils/index.ts

@@ -80,17 +80,13 @@ const UNIQUE_VALUES_LIMIT = 1000000;
 const sortValuesPredicate = (a: { label: string }, b: { label: string }) =>
   a.label.localeCompare(b.label, "en", { numeric: true });
 
-function convertColumnData(
-  type: ValueType,
-  response: PTableVector,
-  absentValue: number | null = null,
-): PValue[] {
+function convertColumnData(type: ValueType, response: PTableVector): PValue[] {
   if (type === "String") {
     return response.data as PValue[];
   }
   const res: PValue[] = new Array(response.data.length);
   for (let i = 0; i < response.data.length; i++) {
-    res[i] = pTableValue(response, i, { absent: absentValue, na: null }) as PValue;
+    res[i] = pTableValue(response, i) as PValue;
   }
   return res;
 }