@platforma-open/milaboratories.vj-usage.ui 2.0.0

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Files changed (18) hide show
  1. package/.turbo/turbo-build.log +19 -0
  2. package/CHANGELOG.md +23 -0
  3. package/dist/assets/index-Bfhy4qws.js +23923 -0
  4. package/dist/assets/index-Bfhy4qws.js.map +1 -0
  5. package/dist/assets/index-DhNsiPnN.css +1 -0
  6. package/dist/index.html +13 -0
  7. package/eslint.config.mjs +4 -0
  8. package/index.html +12 -0
  9. package/package.json +26 -0
  10. package/src/app.ts +17 -0
  11. package/src/main.ts +6 -0
  12. package/src/pages/JUsage.vue +76 -0
  13. package/src/pages/VJUsage.vue +83 -0
  14. package/src/pages/VUsage.vue +98 -0
  15. package/tsconfig.app.json +26 -0
  16. package/tsconfig.json +11 -0
  17. package/tsconfig.node.json +12 -0
  18. package/vite.config.ts +11 -0
package/dist/index.html ADDED
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+ <!doctype html>
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+ <html lang="en">
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+ <head>
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+ <meta charset="UTF-8" />
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+ <meta http-equiv="Content-Security-Policy" content="script-src 'self' blob:">
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+ <script type="module" crossorigin src="./assets/index-Bfhy4qws.js"></script>
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+ <link rel="stylesheet" crossorigin href="./assets/index-DhNsiPnN.css">
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+ </head>
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+ <body>
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+ <div id="app"></div>
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+ </body>
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+ </html>
package/eslint.config.mjs ADDED
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+ import { ui } from '@platforma-sdk/eslint-config';
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+
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+ /** @type {import('eslint').Linter.Config[]} */
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+ export default [...ui];
package/index.html ADDED
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+ <!doctype html>
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+ <html lang="en">
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+ <head>
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+ <meta charset="UTF-8" />
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+ <meta http-equiv="Content-Security-Policy" content="script-src 'self' blob:">
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+ </head>
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+ <body>
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+ <div id="app"></div>
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+ <script type="module" src="/src/main.ts"></script>
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+ </body>
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+ </html>
package/package.json ADDED
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+ {
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+ "name": "@platforma-open/milaboratories.vj-usage.ui",
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+ "version": "2.0.0",
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+ "type": "module",
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+ "dependencies": {
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+ "@milaboratories/graph-maker": "^1.1.71",
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+ "@platforma-sdk/ui-vue": "^1.29.2",
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+ "@platforma-sdk/model": "^1.29.2",
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+ "vue": "^3.5.13",
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+ "@platforma-open/milaboratories.vj-usage.model": "2.0.0"
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+ },
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+ "devDependencies": {
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+ "@vitejs/plugin-vue": "^5.2.1",
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+ "typescript": "~5.5.4",
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+ "vite": "^6.2.2",
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+ "vue-tsc": "^2.2.8",
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+ "@platforma-sdk/eslint-config": "^1.0.3"
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+ },
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+ "scripts": {
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+ "dev": "vite",
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+ "watch": "vue-tsc && vite build --watch",
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+ "build": "vue-tsc -b && vite build",
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+ "lint": "eslint .",
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+ "preview": "vite preview"
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+ }
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+ }
package/src/app.ts ADDED
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+ import { model } from '@platforma-open/milaboratories.vj-usage.model';
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+ import { defineApp } from '@platforma-sdk/ui-vue';
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+ import JUsage from './pages/JUsage.vue';
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+ import VJUsage from './pages/VJUsage.vue';
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+ import VUsage from './pages/VUsage.vue';
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+
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+ export const sdkPlugin = defineApp(model, () => {
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+ return {
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+ routes: {
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+ '/': () => VUsage,
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+ '/jUsage': () => JUsage,
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+ '/vjUsage': () => VJUsage,
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+ },
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+ };
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+ });
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+
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+ export const useApp = sdkPlugin.useApp;
package/src/main.ts ADDED
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+ import { BlockLayout } from '@platforma-sdk/ui-vue';
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+ import '@platforma-sdk/ui-vue/styles';
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+ import { createApp } from 'vue';
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+ import { sdkPlugin } from './app';
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+
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+ createApp(BlockLayout).use(sdkPlugin).mount('#app');
package/src/pages/JUsage.vue ADDED
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+ <script setup lang="ts">
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+ import type { GraphMakerProps } from '@milaboratories/graph-maker';
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+ import { GraphMaker } from '@milaboratories/graph-maker';
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+ import '@milaboratories/graph-maker/styles';
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+ import type { PDataColumnSpec } from '@platforma-sdk/model';
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+ import { PlBtnGroup } from '@platforma-sdk/ui-vue';
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+ import { computed, useTemplateRef } from 'vue';
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+ import { useApp } from '../app';
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+
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+ const app = useApp();
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+
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+ const defaultOptions = computed((): GraphMakerProps['defaultOptions'] => {
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+ const mainCol: PDataColumnSpec = {
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+ kind: 'PColumn',
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+ valueType: 'Double',
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+ name: 'pl7.app/vdj/jGeneUsage',
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+ domain: {
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+ 'pl7.app/vdj/vjGeneUsage/type': app.model.ui.weightedFlag ? 'weighted' : 'unweighted',
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+ },
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+ axesSpec: [],
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+ };
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+ return [
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+ {
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+ inputName: 'value',
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+ selectedSource: mainCol,
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+ },
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+ {
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+ inputName: 'y',
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+ selectedSource: {
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+ type: 'String',
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+ name: 'pl7.app/vdj/jGene',
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+ },
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+ },
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+ {
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+ inputName: 'x',
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+ selectedSource: {
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+ type: 'String',
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+ name: 'pl7.app/sampleId',
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+ },
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+ },
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+ ];
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+ });
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+
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+ const weightOptions = [
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+ {
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+ label: 'Weighted',
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+ value: true,
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+ },
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+ {
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+ label: 'Unweighted',
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+ value: false,
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+ },
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+ ];
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+
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+ const graphMakerRef = useTemplateRef('graphMaker');
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+
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+ const setWeightedFlag = (flag: boolean) => {
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+ app.model.ui.weightedFlag = flag;
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+ graphMakerRef.value?.reset();
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+ };
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+ </script>
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+
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+ <template>
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+ <GraphMaker
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+ ref="graphMaker"
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+ v-model="app.model.ui.jUsagePlotState"
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+ chart-type="heatmap"
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+ :p-frame="app.model.outputs.pf"
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+ :default-options="defaultOptions"
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+ :readonly-inputs="['value']"
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+ >
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+ <template #titleLineSlot>
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+ <PlBtnGroup v-model="app.model.ui.weightedFlag" :options="weightOptions" @v-model:set="setWeightedFlag"/>
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+ </template>
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+ </GraphMaker>
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+ </template>
package/src/pages/VJUsage.vue ADDED
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+ <script setup lang="ts">
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+ import type { GraphMakerProps } from '@milaboratories/graph-maker';
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+ import { GraphMaker } from '@milaboratories/graph-maker';
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+ import '@milaboratories/graph-maker/styles';
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+ import type { PDataColumnSpec } from '@platforma-sdk/model';
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+ import { PlBtnGroup } from '@platforma-sdk/ui-vue';
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+ import { computed, useTemplateRef } from 'vue';
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+ import { useApp } from '../app';
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+
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+ const app = useApp();
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+
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+ const defaultOptions = computed((): GraphMakerProps['defaultOptions'] => {
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+ const mainCol: PDataColumnSpec = {
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+ kind: 'PColumn',
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+ valueType: 'Double',
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+ name: 'pl7.app/vdj/vjGeneUsage',
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+ domain: {
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+ 'pl7.app/vdj/vjGeneUsage/type': app.model.ui.weightedFlag ? 'weighted' : 'unweighted',
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+ },
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+ axesSpec: [],
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+ };
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+ return [
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+ {
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+ inputName: 'value',
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+ selectedSource: mainCol,
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+ },
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+ {
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+ inputName: 'x',
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+ selectedSource: {
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+ type: 'String',
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+ name: 'pl7.app/vdj/vGene',
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+ },
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+ },
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+ {
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+ inputName: 'y',
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+ selectedSource: {
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+ type: 'String',
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+ name: 'pl7.app/vdj/jGene',
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+ },
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+ },
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+ {
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+ inputName: 'tabBy',
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+ selectedSource: {
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+ type: 'String',
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+ name: 'pl7.app/sampleId',
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+ },
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+ },
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+ ];
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+ });
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+
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+ const weightOptions = [
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+ {
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+ label: 'Weighted',
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+ value: true,
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+ },
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+ {
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+ label: 'Unweighted',
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+ value: false,
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+ },
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+ ];
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+
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+ const graphMakerRef = useTemplateRef('graphMaker');
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+
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+ const setWeightedFlag = (flag: boolean) => {
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+ app.model.ui.weightedFlag = flag;
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+ graphMakerRef.value?.reset();
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+ };
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+ </script>
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+
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+ <template>
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+ <GraphMaker
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+ ref="graphMaker"
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+ v-model="app.model.ui.vjUsagePlotState"
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+ chart-type="heatmap"
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+ :p-frame="app.model.outputs.pf"
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+ :default-options="defaultOptions"
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+ :readonly-inputs="['value']"
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+ >
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+ <template #titleLineSlot>
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+ <PlBtnGroup v-model="app.model.ui.weightedFlag" :options="weightOptions" @v-model:set="setWeightedFlag"/>
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+ </template>
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+ </GraphMaker>
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+ </template>
package/src/pages/VUsage.vue ADDED
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+ <script setup lang="ts">
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+ import type { GraphMakerProps } from '@milaboratories/graph-maker';
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+ import { GraphMaker } from '@milaboratories/graph-maker';
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+ import '@milaboratories/graph-maker/styles';
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+ import type { PDataColumnSpec } from '@platforma-sdk/model';
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+ import { PlBtnGroup, PlDropdown, PlDropdownRef } from '@platforma-sdk/ui-vue';
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+ import { computed, useTemplateRef } from 'vue';
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+ import { useApp } from '../app';
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+
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+ const app = useApp();
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+
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+ const defaultOptions = computed((): GraphMakerProps['defaultOptions'] => {
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+ const mainCol: PDataColumnSpec = {
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+ kind: 'PColumn',
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+ valueType: 'Double',
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+ name: 'pl7.app/vdj/vGeneUsage',
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+ domain: {
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+ 'pl7.app/vdj/vjGeneUsage/type': app.model.ui.weightedFlag ? 'weighted' : 'unweighted',
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+ },
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+ axesSpec: [],
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+ };
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+ return [
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+ {
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+ inputName: 'value',
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+ selectedSource: mainCol,
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+ },
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+ {
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+ inputName: 'y',
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+ selectedSource: {
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+ type: 'String',
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+ name: 'pl7.app/vdj/vGene',
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+ },
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+ },
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+ {
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+ inputName: 'x',
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+ selectedSource: {
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+ type: 'String',
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+ name: 'pl7.app/sampleId',
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+ },
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+ },
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+ ];
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+ });
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+
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+ const weightOptions = [
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+ {
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+ label: 'Weighted',
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+ value: true,
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+ },
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+ {
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+ label: 'Unweighted',
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+ value: false,
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+ },
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+ ];
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+
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+ const graphMakerRef = useTemplateRef('graphMaker');
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+
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+ const setWeightedFlag = (flag: boolean) => {
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+ app.model.ui.weightedFlag = flag;
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+ graphMakerRef.value?.reset();
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+ };
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+ </script>
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+
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+ <template>
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+ <GraphMaker
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+ ref="graphMaker"
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+ v-model="app.model.ui.vUsagePlotState"
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+ chart-type="heatmap"
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+ :p-frame="app.model.outputs.pf"
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+ :default-options="defaultOptions"
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+ :readonly-inputs="['value']"
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+ >
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+ <template #titleLineSlot>
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+ <PlBtnGroup v-model="app.model.ui.weightedFlag" :options="weightOptions" @v-model:set="setWeightedFlag"/>
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+ </template>
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+ <template #settingsSlot>
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+ <PlDropdownRef
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+ v-model="app.model.args.vGeneRef"
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+ :options="app.model.outputs.vGeneOptions"
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+ label="V gene"
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+ required
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+ />
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+
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+ <PlDropdown
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+ v-model="app.model.args.jGeneRef"
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+ :options="app.model.outputs.jGeneOptions"
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+ label="J gene"
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+ required
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+ />
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+
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+ <PlDropdown
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+ v-model="app.model.args.abundanceRef"
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+ :options="app.model.outputs.abundanceOptions"
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+ label="Abundance (weight)"
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+ required
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+ />
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+ </template>
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+ </GraphMaker>
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+ </template>
package/tsconfig.app.json ADDED
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+ {
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+ "compilerOptions": {
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+ "composite": false,
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+ "target": "ES2020",
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+ "useDefineForClassFields": true,
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+ "module": "ESNext",
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+ "lib": ["ES2020", "DOM", "DOM.Iterable"],
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+ "skipLibCheck": true,
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+
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+ /* Bundler mode */
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+ "moduleResolution": "bundler",
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+ "allowImportingTsExtensions": true,
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+ "resolveJsonModule": true,
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+ "isolatedModules": true,
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+ "moduleDetection": "force",
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+ "noEmit": true,
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+ "jsx": "preserve",
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+
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+ /* Linting */
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+ "strict": true,
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+ // "noUnusedLocals": true,
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+ // "noUnusedParameters": true,
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+ "noFallthroughCasesInSwitch": true
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+ },
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+ "include": ["src/**/*.ts", "src/**/*.tsx", "src/**/*.vue"]
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+ }
package/tsconfig.json ADDED
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+ {
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+ "files": [],
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+ "references": [
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+ {
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+ "path": "./tsconfig.app.json"
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+ },
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+ {
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+ "path": "./tsconfig.node.json"
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+ }
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+ ]
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+ }
package/tsconfig.node.json ADDED
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+ {
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+ "compilerOptions": {
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+ "composite": false,
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+ "skipLibCheck": true,
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+ "module": "ESNext",
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+ "moduleResolution": "bundler",
7
+ "allowSyntheticDefaultImports": true,
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+ "strict": true,
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+ "noEmit": true
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+ },
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+ "include": ["vite.config.ts"]
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+ }
package/vite.config.ts ADDED
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+ import { defineConfig } from 'vite';
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+ import vue from '@vitejs/plugin-vue';
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+
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+ // https://vitejs.dev/config/
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+ export default defineConfig({
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+ plugins: [vue()],
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+ base: './',
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+ build: {
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+ sourcemap: true,
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+ },
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+ });