@platforma-open/milaboratories.vj-usage.model 2.0.0 → 2.1.0

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Files changed (13) hide show
  1. package/.turbo/turbo-build.log +13 -13
  2. package/CHANGELOG.md +12 -0
  3. package/dist/bundle.js +839 -716
  4. package/dist/bundle.js.map +1 -1
  5. package/dist/index.cjs +48 -39
  6. package/dist/index.cjs.map +1 -1
  7. package/dist/index.d.cts +29 -13
  8. package/dist/index.d.ts +29 -13
  9. package/dist/index.js +49 -40
  10. package/dist/index.js.map +1 -1
  11. package/dist/model.json +1 -1
  12. package/package.json +4 -4
  13. package/src/index.ts +52 -49
package/dist/index.cjs CHANGED
@@ -3,59 +3,68 @@
3
3
  var model$1 = require('@platforma-sdk/model');
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4
 
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  // src/index.ts
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- var model = model$1.BlockModel.create().withArgs({}).withUiState({
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+ var model = model$1.BlockModel.create().withArgs({
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+ scChain: "A",
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+ allele: false
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+ }).withUiState({
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  blockTitle: "V/J Usage",
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  weightedFlag: true,
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  vUsagePlotState: {
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  title: "V Usage",
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- template: "heatmap",
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- currentTab: "settings"
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+ template: "heatmapClustered",
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+ currentTab: "settings",
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+ layersSettings: {
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+ heatmapClustered: {
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+ normalizationDirection: null
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+ }
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+ }
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  },
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  jUsagePlotState: {
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  title: "V Usage",
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- template: "heatmap",
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- currentTab: null
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+ template: "heatmapClustered",
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+ currentTab: null,
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+ layersSettings: {
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+ heatmapClustered: {
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+ normalizationDirection: null
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+ }
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+ }
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  },
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  vjUsagePlotState: {
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  title: "V/J Usage",
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- template: "heatmap",
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- currentTab: null
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- }
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- }).argsValid(
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- (ctx) => ctx.args.vGeneRef !== void 0 && ctx.args.jGeneRef !== void 0 && ctx.args.abundanceRef !== void 0
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- ).output("vGeneOptions", (ctx) => ctx.resultPool.getOptions(
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- (c) => model$1.isPColumnSpec(c) && c.valueType === "String" && (c.name === "pl7.app/vdj/geneHit" || c.name === "pl7.app/vdj/geneHitWithAllele") && c.domain?.["pl7.app/vdj/reference"] === "VGene"
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- )).output("jGeneOptions", (ctx) => {
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- const inputRef = ctx.args.vGeneRef;
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- if (inputRef === void 0) return void 0;
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- const vGeneSpec = ctx.resultPool.getPColumnSpecByRef(inputRef);
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- if (vGeneSpec === void 0) return void 0;
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- return ctx.resultPool.getCanonicalOptions({ main: inputRef }, [
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- {
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- axes: [{ anchor: "main", idx: 0 }],
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- name: vGeneSpec.name,
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- domain: {
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- "pl7.app/vdj/reference": "JGene",
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- "pl7.app/vdj/scClonotypeChain": { anchor: "main" },
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- "pl7.app/vdj/scClonotypeChain/index": { anchor: "main" }
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+ template: "heatmapClustered",
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+ currentTab: null,
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+ layersSettings: {
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+ heatmapClustered: {
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+ normalizationDirection: null
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  }
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  }
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- ], { ignoreMissingDomains: true });
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- }).output("abundanceOptions", (ctx) => {
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- const inputRef = ctx.args.vGeneRef;
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- if (inputRef === void 0) return void 0;
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- return ctx.resultPool.getCanonicalOptions(
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- { main: inputRef },
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+ }
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+ }).argsValid((ctx) => ctx.args.datasetRef !== void 0).output(
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+ "datasetOptions",
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+ (ctx) => ctx.resultPool.getOptions(
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+ [{
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+ axes: [
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+ { name: "pl7.app/sampleId" },
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+ { name: "pl7.app/vdj/clonotypeKey" }
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+ ],
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+ annotations: { "pl7.app/isAnchor": "true" }
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+ }, {
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+ axes: [
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+ { name: "pl7.app/sampleId" },
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+ { name: "pl7.app/vdj/scClonotypeKey" }
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+ ],
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+ annotations: { "pl7.app/isAnchor": "true" }
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+ }],
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  {
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- axes: [{
51
- /* sampleId */
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- }, { anchor: "main", idx: 0 }],
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- annotations: {
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- "pl7.app/isAbundance": "true",
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- "pl7.app/abundance/normalized": "false"
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- }
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+ // suppress native label of the column (e.g. "Number of Reads") to show only the dataset label
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+ label: { includeNativeLabel: false }
57
61
  }
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- );
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+ )
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+ ).output("datasetSpec", (ctx) => {
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+ if (ctx.args.datasetRef === void 0) {
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+ return void 0;
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+ }
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+ return ctx.resultPool.getPColumnSpecByRef(ctx.args.datasetRef);
59
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  }).output("pf", (ctx) => {
60
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  const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
61
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  if (pCols === void 0) {
package/dist/index.cjs.map CHANGED
@@ -1 +1 @@
1
- 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type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PlRef, SUniversalPColumnId } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, isPColumnSpec } from '@platforma-sdk/model';\n\nexport type BlockArgs = {\n vGeneRef?: PlRef;\n jGeneRef?: SUniversalPColumnId;\n abundanceRef?: SUniversalPColumnId;\n};\n\nexport type UiState = {\n blockTitle: string;\n weightedFlag: boolean;\n vUsagePlotState: GraphMakerState;\n jUsagePlotState: GraphMakerState;\n vjUsagePlotState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n\n .withArgs<BlockArgs>({})\n\n .withUiState<UiState>({\n blockTitle: 'V/J Usage',\n weightedFlag: true,\n vUsagePlotState: {\n title: 'V Usage',\n template: 'heatmap',\n currentTab: 'settings',\n },\n jUsagePlotState: {\n title: 'V Usage',\n template: 'heatmap',\n currentTab: null,\n },\n vjUsagePlotState: {\n title: 'V/J Usage',\n template: 'heatmap',\n currentTab: null,\n },\n })\n\n .argsValid((ctx) =>\n ctx.args.vGeneRef !== undefined\n && ctx.args.jGeneRef !== undefined\n && ctx.args.abundanceRef !== undefined,\n )\n\n .output('vGeneOptions', (ctx) =>\n ctx.resultPool.getOptions((c) =>\n isPColumnSpec(c) && c.valueType === 'String'\n && (c.name === 'pl7.app/vdj/geneHit' || c.name === 'pl7.app/vdj/geneHitWithAllele')\n && c.domain?.['pl7.app/vdj/reference'] === 'VGene',\n ))\n\n .output('jGeneOptions', (ctx) => {\n const inputRef = ctx.args.vGeneRef;\n if (inputRef === undefined) return undefined;\n const vGeneSpec = ctx.resultPool.getPColumnSpecByRef(inputRef);\n if (vGeneSpec === undefined) return undefined;\n return ctx.resultPool.getCanonicalOptions({ main: inputRef }, [\n {\n axes: [{ anchor: 'main', idx: 0 }],\n name: vGeneSpec.name,\n domain: {\n 'pl7.app/vdj/reference': 'JGene',\n 'pl7.app/vdj/scClonotypeChain': { anchor: 'main' },\n 'pl7.app/vdj/scClonotypeChain/index': { anchor: 'main' },\n },\n },\n ], { ignoreMissingDomains: true });\n })\n\n .output('abundanceOptions', (ctx) => {\n const inputRef = ctx.args.vGeneRef;\n if (inputRef === undefined) return undefined;\n return ctx.resultPool.getCanonicalOptions({ main: inputRef },\n {\n axes: [{/* sampleId */}, { anchor: 'main', idx: 0 }],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n },\n },\n );\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'V/J Usage')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'V Gene Usage' },\n { type: 'link', href: '/jUsage', label: 'J Gene Usage' },\n { type: 'link', href: '/vjUsage', label: 'V/J Gene Usage' },\n ])\n\n .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
1
+ {"version":3,"sources":["../src/index.ts"],"names":["BlockModel","createPFrameForGraphs"],"mappings":";;;;;AAkBO,IAAM,KAAQ,GAAAA,kBAAA,CAAW,MAAO,EAAA,CAEpC,QAAoB,CAAA;AAAA,EACnB,OAAS,EAAA,GAAA;AAAA,EACT,MAAQ,EAAA;AACV,CAAC,EAEA,WAAqB,CAAA;AAAA,EACpB,UAAY,EAAA,WAAA;AAAA,EACZ,YAAc,EAAA,IAAA;AAAA,EACd,eAAiB,EAAA;AAAA,IACf,KAAO,EAAA,SAAA;AAAA,IACP,QAAU,EAAA,kBAAA;AAAA,IACV,UAAY,EAAA,UAAA;AAAA,IACZ,cAAgB,EAAA;AAAA,MACd,gBAAkB,EAAA;AAAA,QAChB,sBAAwB,EAAA;AAAA;AAC1B;AACF,GACF;AAAA,EACA,eAAiB,EAAA;AAAA,IACf,KAAO,EAAA,SAAA;AAAA,IACP,QAAU,EAAA,kBAAA;AAAA,IACV,UAAY,EAAA,IAAA;AAAA,IACZ,cAAgB,EAAA;AAAA,MACd,gBAAkB,EAAA;AAAA,QAChB,sBAAwB,EAAA;AAAA;AAC1B;AACF,GACF;AAAA,EACA,gBAAkB,EAAA;AAAA,IAChB,KAAO,EAAA,WAAA;AAAA,IACP,QAAU,EAAA,kBAAA;AAAA,IACV,UAAY,EAAA,IAAA;AAAA,IACZ,cAAgB,EAAA;AAAA,MACd,gBAAkB,EAAA;AAAA,QAChB,sBAAwB,EAAA;AAAA;AAC1B;AACF;AAEJ,CAAC,CAAA,CAEA,UAAU,CAAC,GAAA,KAAQ,IAAI,IAAK,CAAA,UAAA,KAAe,MAAS,CAEpD,CAAA,MAAA;AAAA,EAAO,gBAAA;AAAA,EAAkB,CAAC,GACzB,KAAA,GAAA,CAAI,UAAW,CAAA,UAAA;AAAA,IAAW,CAAC;AAAA,MACzB,IAAM,EAAA;AAAA,QACJ,EAAE,MAAM,kBAAmB,EAAA;AAAA,QAC3B,EAAE,MAAM,0BAA2B;AAAA,OACrC;AAAA,MACA,WAAA,EAAa,EAAE,kBAAA,EAAoB,MAAO;AAAA,KACzC,EAAA;AAAA,MACD,IAAM,EAAA;AAAA,QACJ,EAAE,MAAM,kBAAmB,EAAA;AAAA,QAC3B,EAAE,MAAM,4BAA6B;AAAA,OACvC;AAAA,MACA,WAAA,EAAa,EAAE,kBAAA,EAAoB,MAAO;AAAA,KAC3C,CAAA;AAAA,IACD;AAAA;AAAA,MAEE,KAAA,EAAO,EAAE,kBAAA,EAAoB,KAAM;AAAA;AACrC;AACF,CAEC,CAAA,MAAA,CAAO,aAAe,EAAA,CAAC,GAAQ,KAAA;AAC9B,EAAI,IAAA,GAAA,CAAI,IAAK,CAAA,UAAA,KAAe,MAAW,EAAA;AACrC,IAAO,OAAA,MAAA;AAAA;AAGT,EAAA,OAAO,GAAI,CAAA,UAAA,CAAW,mBAAoB,CAAA,GAAA,CAAI,KAAK,UAAU,CAAA;AAC/D,CAAC,CAEA,CAAA,MAAA,CAAO,IAAM,EAAA,CAAC,GAAQ,KAAA;AACrB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AACtD,EAAA,IAAI,UAAU,MAAW,EAAA;AACvB,IAAO,OAAA,MAAA;AAAA;AAGT,EAAO,OAAAC,6BAAA,CAAsB,KAAK,KAAK,CAAA;AACzC,CAAC,CAAA,CAEA,OAAO,WAAa,EAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,mBAAwB,KAAA,KAAK,EAEvE,KAAM,CAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,cAAc,WAAW,CAAA,CAErD,QAAS,CAAA,CAAC,CAAM,KAAA;AAAA,EACf,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,GAAA,EAAK,OAAO,cAAe,EAAA;AAAA,EACjD,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,SAAA,EAAW,OAAO,cAAe,EAAA;AAAA,EACvD,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,UAAA,EAAY,OAAO,gBAAiB;AAC5D,CAAC,EAEA,IAAK","file":"index.cjs","sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs } from '@platforma-sdk/model';\n\nexport type BlockArgs = {\n datasetRef?: PlRef;\n scChain?: string;\n allele?: boolean;\n};\n\nexport type UiState = {\n blockTitle: string;\n weightedFlag: boolean;\n vUsagePlotState: GraphMakerState;\n jUsagePlotState: GraphMakerState;\n vjUsagePlotState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n\n .withArgs<BlockArgs>({\n scChain: 'A',\n allele: false,\n })\n\n .withUiState<UiState>({\n blockTitle: 'V/J Usage',\n weightedFlag: true,\n vUsagePlotState: {\n title: 'V Usage',\n template: 'heatmapClustered',\n currentTab: 'settings',\n layersSettings: {\n heatmapClustered: {\n normalizationDirection: null,\n },\n },\n },\n jUsagePlotState: {\n title: 'V Usage',\n template: 'heatmapClustered',\n currentTab: null,\n layersSettings: {\n heatmapClustered: {\n normalizationDirection: null,\n },\n },\n },\n vjUsagePlotState: {\n title: 'V/J Usage',\n template: 'heatmapClustered',\n currentTab: null,\n layersSettings: {\n heatmapClustered: {\n normalizationDirection: null,\n },\n },\n },\n })\n\n .argsValid((ctx) => ctx.args.datasetRef !== undefined)\n\n .output('datasetOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { name: 'pl7.app/vdj/clonotypeKey' },\n ],\n annotations: { 'pl7.app/isAnchor': 'true' },\n }, {\n axes: [\n { name: 'pl7.app/sampleId' },\n { name: 'pl7.app/vdj/scClonotypeKey' },\n ],\n annotations: { 'pl7.app/isAnchor': 'true' },\n }],\n {\n // suppress native label of the column (e.g. \"Number of Reads\") to show only the dataset label\n label: { includeNativeLabel: false },\n }),\n )\n\n .output('datasetSpec', (ctx) => {\n if (ctx.args.datasetRef === undefined) {\n return undefined;\n }\n\n return ctx.resultPool.getPColumnSpecByRef(ctx.args.datasetRef);\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'V/J Usage')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'V Gene Usage' },\n { type: 'link', href: '/jUsage', label: 'J Gene Usage' },\n { type: 'link', href: '/vjUsage', label: 'V/J Gene Usage' },\n ])\n\n .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
package/dist/index.d.cts CHANGED
@@ -1,11 +1,11 @@
1
1
  import * as _platforma_sdk_model from '@platforma-sdk/model';
2
- import { PlRef, SUniversalPColumnId, InferOutputsType } from '@platforma-sdk/model';
2
+ import { PlRef, InferOutputsType } from '@platforma-sdk/model';
3
3
  import { GraphMakerState } from '@milaboratories/graph-maker';
4
4
 
5
5
  type BlockArgs = {
6
- vGeneRef?: PlRef;
7
- jGeneRef?: SUniversalPColumnId;
8
- abundanceRef?: SUniversalPColumnId;
6
+ datasetRef?: PlRef;
7
+ scChain?: string;
8
+ allele?: boolean;
9
9
  };
10
10
  type UiState = {
11
11
  blockTitle: string;
@@ -15,22 +15,38 @@ type UiState = {
15
15
  vjUsagePlotState: GraphMakerState;
16
16
  };
17
17
  declare const model: _platforma_sdk_model.Platforma<BlockArgs, {
18
- vGeneOptions: _platforma_sdk_model.ValueOrErrors<{
18
+ datasetOptions: _platforma_sdk_model.ValueOrErrors<{
19
19
  readonly ref: {
20
20
  readonly __isRef: true;
21
21
  readonly blockId: string;
22
22
  readonly name: string;
23
+ readonly requireEnrichments?: true | undefined;
23
24
  };
24
25
  readonly label: string;
25
26
  }[]>;
26
- jGeneOptions: _platforma_sdk_model.ValueOrErrors<{
27
- label: string;
28
- value: SUniversalPColumnId;
29
- }[] | undefined>;
30
- abundanceOptions: _platforma_sdk_model.ValueOrErrors<{
31
- label: string;
32
- value: SUniversalPColumnId;
33
- }[] | undefined>;
27
+ datasetSpec: _platforma_sdk_model.ValueOrErrors<{
28
+ readonly valueType: _platforma_sdk_model.ValueType;
29
+ readonly kind: "PColumn";
30
+ readonly name: string;
31
+ readonly domain?: {
32
+ [x: string]: string;
33
+ } | undefined;
34
+ readonly annotations?: {
35
+ [x: string]: string;
36
+ } | undefined;
37
+ readonly parentAxes?: number[] | undefined;
38
+ readonly axesSpec: {
39
+ readonly type: _platforma_sdk_model.ValueType;
40
+ readonly name: string;
41
+ readonly domain?: {
42
+ [x: string]: string;
43
+ } | undefined;
44
+ readonly annotations?: {
45
+ [x: string]: string;
46
+ } | undefined;
47
+ readonly parentAxes?: number[] | undefined;
48
+ }[];
49
+ } | undefined>;
34
50
  pf: _platforma_sdk_model.ValueOrErrors<_platforma_sdk_model.PFrameHandle | undefined>;
35
51
  isRunning: _platforma_sdk_model.ValueOrErrors<boolean>;
36
52
  }, UiState, "/" | "/jUsage" | "/vjUsage">;
package/dist/index.d.ts CHANGED
@@ -1,11 +1,11 @@
1
1
  import * as _platforma_sdk_model from '@platforma-sdk/model';
2
- import { PlRef, SUniversalPColumnId, InferOutputsType } from '@platforma-sdk/model';
2
+ import { PlRef, InferOutputsType } from '@platforma-sdk/model';
3
3
  import { GraphMakerState } from '@milaboratories/graph-maker';
4
4
 
5
5
  type BlockArgs = {
6
- vGeneRef?: PlRef;
7
- jGeneRef?: SUniversalPColumnId;
8
- abundanceRef?: SUniversalPColumnId;
6
+ datasetRef?: PlRef;
7
+ scChain?: string;
8
+ allele?: boolean;
9
9
  };
10
10
  type UiState = {
11
11
  blockTitle: string;
@@ -15,22 +15,38 @@ type UiState = {
15
15
  vjUsagePlotState: GraphMakerState;
16
16
  };
17
17
  declare const model: _platforma_sdk_model.Platforma<BlockArgs, {
18
- vGeneOptions: _platforma_sdk_model.ValueOrErrors<{
18
+ datasetOptions: _platforma_sdk_model.ValueOrErrors<{
19
19
  readonly ref: {
20
20
  readonly __isRef: true;
21
21
  readonly blockId: string;
22
22
  readonly name: string;
23
+ readonly requireEnrichments?: true | undefined;
23
24
  };
24
25
  readonly label: string;
25
26
  }[]>;
26
- jGeneOptions: _platforma_sdk_model.ValueOrErrors<{
27
- label: string;
28
- value: SUniversalPColumnId;
29
- }[] | undefined>;
30
- abundanceOptions: _platforma_sdk_model.ValueOrErrors<{
31
- label: string;
32
- value: SUniversalPColumnId;
33
- }[] | undefined>;
27
+ datasetSpec: _platforma_sdk_model.ValueOrErrors<{
28
+ readonly valueType: _platforma_sdk_model.ValueType;
29
+ readonly kind: "PColumn";
30
+ readonly name: string;
31
+ readonly domain?: {
32
+ [x: string]: string;
33
+ } | undefined;
34
+ readonly annotations?: {
35
+ [x: string]: string;
36
+ } | undefined;
37
+ readonly parentAxes?: number[] | undefined;
38
+ readonly axesSpec: {
39
+ readonly type: _platforma_sdk_model.ValueType;
40
+ readonly name: string;
41
+ readonly domain?: {
42
+ [x: string]: string;
43
+ } | undefined;
44
+ readonly annotations?: {
45
+ [x: string]: string;
46
+ } | undefined;
47
+ readonly parentAxes?: number[] | undefined;
48
+ }[];
49
+ } | undefined>;
34
50
  pf: _platforma_sdk_model.ValueOrErrors<_platforma_sdk_model.PFrameHandle | undefined>;
35
51
  isRunning: _platforma_sdk_model.ValueOrErrors<boolean>;
36
52
  }, UiState, "/" | "/jUsage" | "/vjUsage">;
package/dist/index.js CHANGED
@@ -1,59 +1,68 @@
1
- import { BlockModel, isPColumnSpec, createPFrameForGraphs } from '@platforma-sdk/model';
1
+ import { BlockModel, createPFrameForGraphs } from '@platforma-sdk/model';
2
2
 
3
3
  // src/index.ts
4
- var model = BlockModel.create().withArgs({}).withUiState({
4
+ var model = BlockModel.create().withArgs({
5
+ scChain: "A",
6
+ allele: false
7
+ }).withUiState({
5
8
  blockTitle: "V/J Usage",
6
9
  weightedFlag: true,
7
10
  vUsagePlotState: {
8
11
  title: "V Usage",
9
- template: "heatmap",
10
- currentTab: "settings"
12
+ template: "heatmapClustered",
13
+ currentTab: "settings",
14
+ layersSettings: {
15
+ heatmapClustered: {
16
+ normalizationDirection: null
17
+ }
18
+ }
11
19
  },
12
20
  jUsagePlotState: {
13
21
  title: "V Usage",
14
- template: "heatmap",
15
- currentTab: null
22
+ template: "heatmapClustered",
23
+ currentTab: null,
24
+ layersSettings: {
25
+ heatmapClustered: {
26
+ normalizationDirection: null
27
+ }
28
+ }
16
29
  },
17
30
  vjUsagePlotState: {
18
31
  title: "V/J Usage",
19
- template: "heatmap",
20
- currentTab: null
21
- }
22
- }).argsValid(
23
- (ctx) => ctx.args.vGeneRef !== void 0 && ctx.args.jGeneRef !== void 0 && ctx.args.abundanceRef !== void 0
24
- ).output("vGeneOptions", (ctx) => ctx.resultPool.getOptions(
25
- (c) => isPColumnSpec(c) && c.valueType === "String" && (c.name === "pl7.app/vdj/geneHit" || c.name === "pl7.app/vdj/geneHitWithAllele") && c.domain?.["pl7.app/vdj/reference"] === "VGene"
26
- )).output("jGeneOptions", (ctx) => {
27
- const inputRef = ctx.args.vGeneRef;
28
- if (inputRef === void 0) return void 0;
29
- const vGeneSpec = ctx.resultPool.getPColumnSpecByRef(inputRef);
30
- if (vGeneSpec === void 0) return void 0;
31
- return ctx.resultPool.getCanonicalOptions({ main: inputRef }, [
32
- {
33
- axes: [{ anchor: "main", idx: 0 }],
34
- name: vGeneSpec.name,
35
- domain: {
36
- "pl7.app/vdj/reference": "JGene",
37
- "pl7.app/vdj/scClonotypeChain": { anchor: "main" },
38
- "pl7.app/vdj/scClonotypeChain/index": { anchor: "main" }
32
+ template: "heatmapClustered",
33
+ currentTab: null,
34
+ layersSettings: {
35
+ heatmapClustered: {
36
+ normalizationDirection: null
39
37
  }
40
38
  }
41
- ], { ignoreMissingDomains: true });
42
- }).output("abundanceOptions", (ctx) => {
43
- const inputRef = ctx.args.vGeneRef;
44
- if (inputRef === void 0) return void 0;
45
- return ctx.resultPool.getCanonicalOptions(
46
- { main: inputRef },
39
+ }
40
+ }).argsValid((ctx) => ctx.args.datasetRef !== void 0).output(
41
+ "datasetOptions",
42
+ (ctx) => ctx.resultPool.getOptions(
43
+ [{
44
+ axes: [
45
+ { name: "pl7.app/sampleId" },
46
+ { name: "pl7.app/vdj/clonotypeKey" }
47
+ ],
48
+ annotations: { "pl7.app/isAnchor": "true" }
49
+ }, {
50
+ axes: [
51
+ { name: "pl7.app/sampleId" },
52
+ { name: "pl7.app/vdj/scClonotypeKey" }
53
+ ],
54
+ annotations: { "pl7.app/isAnchor": "true" }
55
+ }],
47
56
  {
48
- axes: [{
49
- /* sampleId */
50
- }, { anchor: "main", idx: 0 }],
51
- annotations: {
52
- "pl7.app/isAbundance": "true",
53
- "pl7.app/abundance/normalized": "false"
54
- }
57
+ // suppress native label of the column (e.g. "Number of Reads") to show only the dataset label
58
+ label: { includeNativeLabel: false }
55
59
  }
56
- );
60
+ )
61
+ ).output("datasetSpec", (ctx) => {
62
+ if (ctx.args.datasetRef === void 0) {
63
+ return void 0;
64
+ }
65
+ return ctx.resultPool.getPColumnSpecByRef(ctx.args.datasetRef);
57
66
  }).output("pf", (ctx) => {
58
67
  const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
59
68
  if (pCols === void 0) {
package/dist/index.js.map CHANGED
@@ -1 +1 @@
1
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type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PlRef, SUniversalPColumnId } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, isPColumnSpec } from '@platforma-sdk/model';\n\nexport type BlockArgs = {\n vGeneRef?: PlRef;\n jGeneRef?: SUniversalPColumnId;\n abundanceRef?: SUniversalPColumnId;\n};\n\nexport type UiState = {\n blockTitle: string;\n weightedFlag: boolean;\n vUsagePlotState: GraphMakerState;\n jUsagePlotState: GraphMakerState;\n vjUsagePlotState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n\n .withArgs<BlockArgs>({})\n\n .withUiState<UiState>({\n blockTitle: 'V/J Usage',\n weightedFlag: true,\n vUsagePlotState: {\n title: 'V Usage',\n template: 'heatmap',\n currentTab: 'settings',\n },\n jUsagePlotState: {\n title: 'V Usage',\n template: 'heatmap',\n currentTab: null,\n },\n vjUsagePlotState: {\n title: 'V/J Usage',\n template: 'heatmap',\n currentTab: null,\n },\n })\n\n .argsValid((ctx) =>\n ctx.args.vGeneRef !== undefined\n && ctx.args.jGeneRef !== undefined\n && ctx.args.abundanceRef !== undefined,\n )\n\n .output('vGeneOptions', (ctx) =>\n ctx.resultPool.getOptions((c) =>\n isPColumnSpec(c) && c.valueType === 'String'\n && (c.name === 'pl7.app/vdj/geneHit' || c.name === 'pl7.app/vdj/geneHitWithAllele')\n && c.domain?.['pl7.app/vdj/reference'] === 'VGene',\n ))\n\n .output('jGeneOptions', (ctx) => {\n const inputRef = ctx.args.vGeneRef;\n if (inputRef === undefined) return undefined;\n const vGeneSpec = ctx.resultPool.getPColumnSpecByRef(inputRef);\n if (vGeneSpec === undefined) return undefined;\n return ctx.resultPool.getCanonicalOptions({ main: inputRef }, [\n {\n axes: [{ anchor: 'main', idx: 0 }],\n name: vGeneSpec.name,\n domain: {\n 'pl7.app/vdj/reference': 'JGene',\n 'pl7.app/vdj/scClonotypeChain': { anchor: 'main' },\n 'pl7.app/vdj/scClonotypeChain/index': { anchor: 'main' },\n },\n },\n ], { ignoreMissingDomains: true });\n })\n\n .output('abundanceOptions', (ctx) => {\n const inputRef = ctx.args.vGeneRef;\n if (inputRef === undefined) return undefined;\n return ctx.resultPool.getCanonicalOptions({ main: inputRef },\n {\n axes: [{/* sampleId */}, { anchor: 'main', idx: 0 }],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n },\n },\n );\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 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