@platforma-open/milaboratories.top-antibodies 4.6.1 → 5.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/block-pack/main.plj.gz +0 -0
- package/block-pack/manifest.json +1 -1
- package/block-pack/model.json +1 -1
- package/block-pack/published.json +1 -1
- package/block-pack/ui.tgz +0 -0
- package/dist/AGENTS.d.ts +203 -150
- package/dist/AGENTS.d.ts.map +1 -1
- package/dist/index.d.ts +203 -150
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +577 -251
- package/dist/index.js.map +1 -1
- package/package.json +12 -7
package/dist/index.js
CHANGED
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@@ -1,12 +1,12 @@
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import { r as __toESM, t as __commonJSMin } from "./rolldown-runtime-B-1-B7_t.js";
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-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
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//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/plugin_handle.js
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const PLUGIN_OUTPUT_PREFIX = "plugin-output#";
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/** Construct the output key for a plugin output in the block outputs map. */
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function pluginOutputKey(handle, outputKey) {
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return `${PLUGIN_OUTPUT_PREFIX}${handle}#${outputKey}`;
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}
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//#endregion
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//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
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//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/block_storage.js
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/**
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* Discriminator key for BlockStorage format detection.
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* This unique hash-based key identifies data as BlockStorage vs legacy formats.
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content: stringType()
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});
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/bmodel/block_kind_ref.js
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/**
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* Compose a {@link BlockKindReference} from a kind's `name`/`version`.
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*
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to: numberType().min(1)
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});
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/util.js
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function assertNever(x) {
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throw new Error("Unexpected object: " + x);
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}
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@@ -3843,7 +3843,7 @@ function uniqueBy(array, makeId) {
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return [...new Map(array.map((e) => [makeId(e), e])).values()];
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}
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/data_info.js
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/**
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* Type guard function that checks if the given value is a valid DataInfo.
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*
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}
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}
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/errors.js
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var ServiceError = class extends Error {
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name = "ServiceError";
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};
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return new Error(stringifyValue(value));
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}
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/json.js
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var import_canonicalize = /* @__PURE__ */ __toESM((/* @__PURE__ */ __commonJSMin(((exports, module) => {
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module.exports = function serialize(object) {
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if (typeof object === "number" && isNaN(object)) throw new Error("NaN is not allowed");
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}
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}
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/spec/spec.js
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function readMetadata(metadata, key) {
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return metadata?.[key];
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}
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return query.name === target.name && matchDomain$1(query.domain, target.domain) && matchDomain$1(query.contextDomain, target.contextDomain);
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}
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/query/utils.js
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const BOOLEAN_TYPES = /* @__PURE__ */ new Set([
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"numericComparison",
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"stringEquals",
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return result;
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}
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/table_calculate.js
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function mapPTableDef(def, cb) {
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return {
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...def,
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}
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}
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/table_common.js
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function getPTableColumnId(spec) {
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switch (spec.type) {
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case "axis": return {
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}
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}
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/spec/filtered_column.js
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function stringifyColumnFilteredId(key) {
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}
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};
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}
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/pool/spec.js
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function isPObjectId(value) {
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return isPObjectKey(parseJsonSafely(value));
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else throw v;
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}
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//#endregion
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/spec/discovered_column.js
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function isColumnDiscoveredKey(obj) {
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return typeof obj === "object" && obj !== null && "__isDiscovered" in obj;
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}
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/spec/ids.js
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/spec/overridden.js
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function isColumnOverriddenKey(obj) {
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/spec/anchored.js
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/drivers/pframe/spec/native_id.js
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var LinkerMap = class LinkerMap {
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/** Well-known resource type names used across the platform. */
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BResolveChoice: "BResolveChoice",
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const SERVICE_ID_PATTERN = /^[a-zA-Z][a-zA-Z0-9]*$/;
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const { service, isNodeService, isWasmService, isMainService, getServiceKind, getServiceModelMethods, getServiceUiMethods } = (() => {
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
|
|
5824
|
+
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/services/service_declarations.js
|
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|
const Services = {
|
|
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|
PFrameSpec: service()({
|
|
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|
type: "wasm",
|
|
@@ -5910,7 +5915,7 @@ function resolveRequiredServices(flags) {
|
|
|
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|
}
|
|
5911
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|
Object.fromEntries(Object.keys(Services).map((key) => [`requires${key}`, true]));
|
|
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|
//#endregion
|
|
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|
-
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
|
|
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|
+
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/services/service_injectors.js
|
|
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|
function buildMethodMap(pick) {
|
|
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|
const result = {};
|
|
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|
for (const id of Object.values(Services)) result[id] = [...pick(id)];
|
|
@@ -5919,7 +5924,7 @@ function buildMethodMap(pick) {
|
|
|
5919
5924
|
buildMethodMap(getServiceUiMethods);
|
|
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|
buildMethodMap(getServiceModelMethods);
|
|
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|
//#endregion
|
|
5922
|
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
|
|
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|
+
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/columns/accessor_traversal.js
|
|
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|
/** Resource types that hold column collections — DFS stops here and collects. */
|
|
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|
const COLLECT_TYPES = [ResourceTypeName.PFrame];
|
|
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|
/** Resource types DFS descends through when looking for PFrames. */
|
|
@@ -6027,7 +6032,7 @@ function indexPoolBlock(block) {
|
|
|
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|
return result;
|
|
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|
}
|
|
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|
//#endregion
|
|
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|
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//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
|
|
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|
+
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/columns/column_registry.js
|
|
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6036
|
/**
|
|
6032
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|
* Id-index over a set of {@link ColumnEntriesProvider}s. Sole job:
|
|
6033
6038
|
* {@link PObjectId} → {@link LeafEntry}. Generic over the accessor flavour, so
|
|
@@ -6064,7 +6069,7 @@ var ColumnRegistry = class {
|
|
|
6064
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|
}
|
|
6065
6070
|
};
|
|
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|
//#endregion
|
|
6067
|
-
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
|
|
6072
|
+
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/columns/dedup.js
|
|
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|
/**
|
|
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|
* Two-track dedup over an item stream keyed by `ColumnUniversalId`:
|
|
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6075
|
*
|
|
@@ -6105,7 +6110,7 @@ function dedupColumns(items, getId, getSpec) {
|
|
|
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|
return out;
|
|
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6111
|
}
|
|
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|
//#endregion
|
|
6108
|
-
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
|
|
6113
|
+
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/columns/providers.js
|
|
6109
6114
|
/**
|
|
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|
* Generic entries provider over a single accessor root. Walks `<root>` once
|
|
6111
6116
|
* from the supplied `rootPath`, builds an id → {@link LeafEntry} map and
|
|
@@ -6162,7 +6167,7 @@ var ResultPoolEntriesProvider = class {
|
|
|
6162
6167
|
}
|
|
6163
6168
|
};
|
|
6164
6169
|
//#endregion
|
|
6165
|
-
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
|
|
6170
|
+
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/template/template_ref_form.js
|
|
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|
/**
|
|
6167
6172
|
* Whether `value` is a reference in the readable spelling.
|
|
6168
6173
|
*
|
|
@@ -6231,7 +6236,7 @@ function expandTemplatePlRef(ref) {
|
|
|
6231
6236
|
};
|
|
6232
6237
|
}
|
|
6233
6238
|
//#endregion
|
|
6234
|
-
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.
|
|
6239
|
+
//#region ../node_modules/.pnpm/@milaboratories+pl-model-common@1.53.0/node_modules/@milaboratories/pl-model-common/dist/template/template_relocate.js
|
|
6235
6240
|
/**
|
|
6236
6241
|
* Point every column identifier in a block's params at the blocks of the project being built.
|
|
6237
6242
|
*
|
|
@@ -6291,7 +6296,7 @@ function relocateBlockIds(params, blockIds) {
|
|
|
6291
6296
|
return walk(params);
|
|
6292
6297
|
}
|
|
6293
6298
|
//#endregion
|
|
6294
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
6299
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/block_migrations.js
|
|
6295
6300
|
/** Create a DataVersioned wrapper with correct shape */
|
|
6296
6301
|
function makeVersionedData(version, data) {
|
|
6297
6302
|
return {
|
|
@@ -6869,7 +6874,7 @@ var DataModel = class DataModel {
|
|
|
6869
6874
|
}
|
|
6870
6875
|
};
|
|
6871
6876
|
//#endregion
|
|
6872
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
6877
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/internal.js
|
|
6873
6878
|
/** Utility code helping to identify whether the code is running in actual UI environment */
|
|
6874
6879
|
function isInUI() {
|
|
6875
6880
|
return typeof globalThis.getPlatforma !== "undefined" || typeof globalThis.platforma !== "undefined";
|
|
@@ -6939,7 +6944,7 @@ function registerFutureAwait(handle, onResolve) {
|
|
|
6939
6944
|
futureResolves.get(handle).push(onResolve);
|
|
6940
6945
|
}
|
|
6941
6946
|
//#endregion
|
|
6942
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
6947
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/block_storage_facade.js
|
|
6943
6948
|
/**
|
|
6944
6949
|
* All facade callback names as constants.
|
|
6945
6950
|
* These are the source of truth - the interface is derived from these.
|
|
@@ -6977,7 +6982,7 @@ function registerFacadeCallbacks(callbacks) {
|
|
|
6977
6982
|
for (const key of Object.values(BlockStorageFacadeCallbacks)) tryRegisterCallback(key, callbacks[key]);
|
|
6978
6983
|
}
|
|
6979
6984
|
//#endregion
|
|
6980
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
6985
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/services/block_services.js
|
|
6981
6986
|
/**
|
|
6982
6987
|
* Services required by all V3 blocks by default.
|
|
6983
6988
|
* Edit this when a new service should be available to all blocks.
|
|
@@ -6993,7 +6998,7 @@ const BLOCK_SERVICE_FLAGS = {
|
|
|
6993
6998
|
};
|
|
6994
6999
|
resolveRequiredServices(BLOCK_SERVICE_FLAGS);
|
|
6995
7000
|
//#endregion
|
|
6996
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
7001
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/render/future.js
|
|
6997
7002
|
var FutureRef = class FutureRef {
|
|
6998
7003
|
handle;
|
|
6999
7004
|
postProcess;
|
|
@@ -7021,7 +7026,7 @@ var FutureRef = class FutureRef {
|
|
|
7021
7026
|
}
|
|
7022
7027
|
};
|
|
7023
7028
|
//#endregion
|
|
7024
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
7029
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/render/accessor.js
|
|
7025
7030
|
function ifDef(value, cb) {
|
|
7026
7031
|
return value === void 0 ? void 0 : cb(value);
|
|
7027
7032
|
}
|
|
@@ -7271,11 +7276,11 @@ var TreeNodeAccessor = class TreeNodeAccessor {
|
|
|
7271
7276
|
}
|
|
7272
7277
|
};
|
|
7273
7278
|
//#endregion
|
|
7274
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
7279
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/render/internal.js
|
|
7275
7280
|
const MainAccessorName = "main";
|
|
7276
7281
|
const StagingAccessorName = "staging";
|
|
7277
7282
|
//#endregion
|
|
7278
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
7283
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/render/util/axis_filtering.js
|
|
7279
7284
|
function filterDataInfoEntries(dataInfoEntries, axisFilters) {
|
|
7280
7285
|
const sortedFilters = [...axisFilters].sort((a, b) => b[0] - a[0]);
|
|
7281
7286
|
const { type } = dataInfoEntries;
|
|
@@ -7339,7 +7344,7 @@ function filterDataInfoEntries(dataInfoEntries, axisFilters) {
|
|
|
7339
7344
|
}
|
|
7340
7345
|
}
|
|
7341
7346
|
//#endregion
|
|
7342
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
7347
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/labels/linked_column_postfix.js
|
|
7343
7348
|
/**
|
|
7344
7349
|
* Structural postfix derivation for linked columns (phase 2 of `deriveDistinctLabels`).
|
|
7345
7350
|
*
|
|
@@ -7522,7 +7527,7 @@ function derivePostfixes(entries, format = defaultLinkerFormatter) {
|
|
|
7522
7527
|
});
|
|
7523
7528
|
}
|
|
7524
7529
|
//#endregion
|
|
7525
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
7530
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/labels/derive_distinct_labels.js
|
|
7526
7531
|
const DISTANCE_PENALTY = .001;
|
|
7527
7532
|
const LABEL_TYPE = "__LABEL__";
|
|
7528
7533
|
const LABEL_TYPE_FULL = "__LABEL__@1";
|
|
@@ -7564,6 +7569,7 @@ function deriveStems(values, options) {
|
|
|
7564
7569
|
if (labelForced) forcedSet.add(LABEL_TYPE_FULL);
|
|
7565
7570
|
const { mainTypes, secondaryTypes } = classifyTypes(stats, values.length);
|
|
7566
7571
|
const build = (typeSet, force) => buildLabels(records, typeSet, forceTraceElements, separator, force);
|
|
7572
|
+
const finalize = (minimized, rendered) => repairBareLabels(rendered, minimized, records, stats, forceTraceElements, separator);
|
|
7567
7573
|
if (mainTypes.length === 0) {
|
|
7568
7574
|
if (secondaryTypes.length !== 0) throw new Error("Non-empty secondary types list while main types list is empty.");
|
|
7569
7575
|
return build(/* @__PURE__ */ new Set([LABEL_TYPE_FULL]), true) ?? throwError("Failed to derive labels using native column labels");
|
|
@@ -7577,7 +7583,7 @@ function deriveStems(values, options) {
|
|
|
7577
7583
|
const candidateResult = build(currentSet, false);
|
|
7578
7584
|
if (candidateResult !== void 0 && countUniqueLabels(candidateResult) === values.length) {
|
|
7579
7585
|
const minimized = minimizeTypeSet(currentSet, records, stats, forceTraceElements, forcedSet, separator);
|
|
7580
|
-
return
|
|
7586
|
+
return finalize(minimized, build(minimized, false) ?? throwError("Failed to derive unique labels"));
|
|
7581
7587
|
}
|
|
7582
7588
|
additionalType++;
|
|
7583
7589
|
if (additionalType >= mainTypes.length) {
|
|
@@ -7590,7 +7596,7 @@ function deriveStems(values, options) {
|
|
|
7590
7596
|
...mainTypes,
|
|
7591
7597
|
...secondaryTypes
|
|
7592
7598
|
]), records, stats, forceTraceElements, forcedSet, separator);
|
|
7593
|
-
return
|
|
7599
|
+
return finalize(minimized, build(minimized, true) ?? throwError("Failed to derive unique labels"));
|
|
7594
7600
|
}
|
|
7595
7601
|
function extractEntryParts(entry) {
|
|
7596
7602
|
if (!("spec" in entry && typeof entry.spec === "object")) return {
|
|
@@ -7755,62 +7761,202 @@ function minimizeTypeSet(typeSet, records, stats, forceTraceElements, forcedSet,
|
|
|
7755
7761
|
}
|
|
7756
7762
|
return result;
|
|
7757
7763
|
}
|
|
7758
|
-
|
|
7759
|
-
|
|
7760
|
-
|
|
7761
|
-
|
|
7762
|
-
|
|
7763
|
-
|
|
7764
|
-
|
|
7765
|
-
|
|
7766
|
-
|
|
7767
|
-
|
|
7768
|
-
|
|
7769
|
-
|
|
7770
|
-
|
|
7771
|
-
|
|
7772
|
-
|
|
7773
|
-
|
|
7774
|
-
|
|
7775
|
-
|
|
7776
|
-
|
|
7777
|
-
|
|
7778
|
-
|
|
7779
|
-
|
|
7780
|
-
|
|
7781
|
-
|
|
7782
|
-
|
|
7783
|
-
|
|
7784
|
-
|
|
7785
|
-
|
|
7786
|
-
|
|
7787
|
-
* carries that tells it apart from its peers, so every colliding column is distinguished by a token
|
|
7788
|
-
* it HAS rather than by omission.
|
|
7789
|
-
*
|
|
7790
|
-
* Patches individual labels rather than the shared type set on purpose: the set is global, so adding
|
|
7791
|
-
* a type there would also decorate unrelated columns in other groups that happen to carry it. Only
|
|
7792
|
-
* bare columns' labels grow (a superset of their previous value), so uniqueness is preserved. Groups
|
|
7793
|
-
* are keyed by the base = the label rendered from the forced types alone.
|
|
7794
|
-
*/
|
|
7795
|
-
function repairBareByPresence(labels, minimized, records, stats, forcedSet, forceTraceElements, separator) {
|
|
7796
|
-
const base = records.map((r) => renderRecordLabel(r, forcedSet, forceTraceElements, separator));
|
|
7797
|
-
const isBare = records.map((r, i) => renderRecordLabel(r, minimized, forceTraceElements, separator) === base[i]);
|
|
7798
|
-
const groups = records.reduce((acc, _, i) => acc.set(base[i] ?? "", [...acc.get(base[i] ?? "") ?? [], i]), /* @__PURE__ */ new Map());
|
|
7764
|
+
/**
|
|
7765
|
+
* Repairs labels told apart only by what they lack: in a group with the same shown base, a
|
|
7766
|
+
* member is bare when its shown parts are a strict subset of a peer's. The group is re-labelled
|
|
7767
|
+
* from parts all members carry, or bare members add a hidden part (group-wide when labels stay
|
|
7768
|
+
* unique), whichever keeps the more important distinction; labels stay unique across the list.
|
|
7769
|
+
*/
|
|
7770
|
+
function repairBareLabels(labels, minimized, records, stats, forceTraceElements, separator) {
|
|
7771
|
+
const traces = records.map((r) => new Map(r.fullTrace.map((ft) => [ft.fullType, ft.label])));
|
|
7772
|
+
const isQualification = (t) => isSyntheticType(t.split("@")[0]);
|
|
7773
|
+
const depths = records.map((r) => {
|
|
7774
|
+
const steps = r.fullTrace.filter((ft) => ft.fullType !== LABEL_TYPE_FULL && !isQualification(ft.fullType));
|
|
7775
|
+
return new Map(steps.map((ft, idx) => [ft.fullType, steps.length - idx]));
|
|
7776
|
+
});
|
|
7777
|
+
const isForced = (t) => forceTraceElements?.has(t.split("@")[0]) === true;
|
|
7778
|
+
const isDistinctionType = (t) => t !== LABEL_TYPE_FULL && !isQualification(t);
|
|
7779
|
+
const importance = (t) => stats.importances.get(t) ?? 0;
|
|
7780
|
+
const byImportance = (a, b) => importance(b) - importance(a);
|
|
7781
|
+
const render = (i, types) => renderRecordLabel(records[i], types, forceTraceElements, separator);
|
|
7782
|
+
const partKey = (t, l) => `${t}\u0000${l}`;
|
|
7783
|
+
const labelShown = minimized.has(LABEL_TYPE_FULL);
|
|
7784
|
+
const baseTypes = new Set(labelShown ? [LABEL_TYPE_FULL] : []);
|
|
7785
|
+
const qualTypes = [...minimized].filter(isQualification);
|
|
7786
|
+
const groups = /* @__PURE__ */ new Map();
|
|
7787
|
+
records.forEach((_, i) => {
|
|
7788
|
+
const key = render(i, baseTypes) ?? "";
|
|
7789
|
+
const group = groups.get(key);
|
|
7790
|
+
if (group) group.push(i);
|
|
7791
|
+
else groups.set(key, [i]);
|
|
7792
|
+
});
|
|
7799
7793
|
const patched = [...labels];
|
|
7800
|
-
|
|
7801
|
-
|
|
7802
|
-
|
|
7803
|
-
|
|
7804
|
-
|
|
7805
|
-
|
|
7806
|
-
|
|
7807
|
-
|
|
7808
|
-
|
|
7794
|
+
const counts = /* @__PURE__ */ new Map();
|
|
7795
|
+
const addCount = (l, d) => counts.set(l, (counts.get(l) ?? 0) + d);
|
|
7796
|
+
for (const l of patched) addCount(l, 1);
|
|
7797
|
+
const tryApply = (members, next) => {
|
|
7798
|
+
if (new Set(next).size !== members.length) return false;
|
|
7799
|
+
for (const i of members) addCount(patched[i], -1);
|
|
7800
|
+
const clashes = next.some((l) => (counts.get(l) ?? 0) > 0);
|
|
7801
|
+
members.forEach((i, k) => {
|
|
7802
|
+
if (!clashes) patched[i] = next[k];
|
|
7803
|
+
addCount(patched[i], 1);
|
|
7804
|
+
});
|
|
7805
|
+
return !clashes;
|
|
7806
|
+
};
|
|
7807
|
+
for (const [key, group] of groups) {
|
|
7808
|
+
if (group.length < 2) continue;
|
|
7809
|
+
const shown = group.map((i) => [...traces[i]].filter(([t]) => t !== LABEL_TYPE_FULL && (minimized.has(t) || isForced(t))));
|
|
7810
|
+
const partKeys = shown.map((parts) => parts.map(([t, l]) => partKey(t, l)));
|
|
7811
|
+
const sigIndex = /* @__PURE__ */ new Map();
|
|
7812
|
+
const setKeys = [];
|
|
7813
|
+
const setMembers = [];
|
|
7814
|
+
const sigOf = partKeys.map((keys, k) => {
|
|
7815
|
+
const sig = [...keys].sort().join("");
|
|
7816
|
+
let s = sigIndex.get(sig);
|
|
7817
|
+
if (s === void 0) {
|
|
7818
|
+
s = setKeys.length;
|
|
7819
|
+
sigIndex.set(sig, s);
|
|
7820
|
+
setKeys.push(keys);
|
|
7821
|
+
setMembers.push([]);
|
|
7822
|
+
}
|
|
7823
|
+
setMembers[s].push(k);
|
|
7824
|
+
return s;
|
|
7825
|
+
});
|
|
7826
|
+
const setSets = setKeys.map((keys) => new Set(keys));
|
|
7827
|
+
const postings = /* @__PURE__ */ new Map();
|
|
7828
|
+
setKeys.forEach((keys, s) => keys.forEach((p) => {
|
|
7829
|
+
const list = postings.get(p);
|
|
7830
|
+
if (list) list.push(s);
|
|
7831
|
+
else postings.set(p, [s]);
|
|
7832
|
+
}));
|
|
7833
|
+
const withParts = setKeys.map((_, s) => s).filter((s) => setKeys[s].length > 0);
|
|
7834
|
+
const supersetSets = setKeys.map((keys, s) => {
|
|
7835
|
+
if (keys.length === 0) return withParts;
|
|
7836
|
+
const rarest = keys.reduce((a, b) => postings.get(a).length <= postings.get(b).length ? a : b);
|
|
7837
|
+
return postings.get(rarest).filter((t) => t !== s && setSets[t].size > keys.length && keys.every((x) => setSets[t].has(x)));
|
|
7838
|
+
});
|
|
7839
|
+
const bare = group.map((_, k) => supersetSets[sigOf[k]].length > 0);
|
|
7840
|
+
if (!bare.some(Boolean)) continue;
|
|
7841
|
+
const typeCount = /* @__PURE__ */ new Map();
|
|
7842
|
+
for (const i of group) for (const t of traces[i].keys()) typeCount.set(t, (typeCount.get(t) ?? 0) + 1);
|
|
7843
|
+
const isUneven = (t) => (typeCount.get(t) ?? 0) > 0 && typeCount.get(t) < group.length;
|
|
7844
|
+
const unevenMax = Math.max(...[...minimized].filter((t) => isDistinctionType(t) && !isForced(t) && isUneven(t)).map(importance));
|
|
7845
|
+
let sharedLabels;
|
|
7846
|
+
let sharedMax = Number.NEGATIVE_INFINITY;
|
|
7847
|
+
if (labelShown && key !== "") {
|
|
7848
|
+
const shared = [...typeCount].filter(([t, n]) => n === group.length && isDistinctionType(t)).map(([t]) => t).sort(byImportance);
|
|
7849
|
+
const chosen = new Set(baseTypes);
|
|
7850
|
+
const distinctCount = (types) => new Set(group.map((i) => render(i, types) ?? "")).size;
|
|
7851
|
+
let count = distinctCount(chosen);
|
|
7852
|
+
for (const t of shared) {
|
|
7853
|
+
if (count === group.length) break;
|
|
7854
|
+
const next = distinctCount(/* @__PURE__ */ new Set([...chosen, t]));
|
|
7855
|
+
if (next > count) {
|
|
7856
|
+
if (chosen.size === baseTypes.size) sharedMax = importance(t);
|
|
7857
|
+
chosen.add(t);
|
|
7858
|
+
count = next;
|
|
7859
|
+
}
|
|
7860
|
+
}
|
|
7861
|
+
const withTags = /* @__PURE__ */ new Set([...chosen, ...qualTypes]);
|
|
7862
|
+
const complete = group.map((i) => render(i, withTags)).filter((l) => l !== void 0);
|
|
7863
|
+
if (count === group.length && complete.length === group.length && new Set(complete).size === group.length) sharedLabels = complete;
|
|
7864
|
+
}
|
|
7865
|
+
const applyBareFix = () => {
|
|
7866
|
+
const bareMembers = group.filter((_, k) => bare[k]);
|
|
7867
|
+
const oldBare = /* @__PURE__ */ new Map();
|
|
7868
|
+
for (const i of bareMembers) oldBare.set(patched[i], (oldBare.get(patched[i]) ?? 0) + 1);
|
|
7869
|
+
const isFree = (l) => (counts.get(l) ?? 0) - (oldBare.get(l) ?? 0) === 0;
|
|
7870
|
+
const shownTypes = (k) => [
|
|
7871
|
+
...baseTypes,
|
|
7872
|
+
...shown[k].map(([t]) => t),
|
|
7873
|
+
...qualTypes
|
|
7874
|
+
];
|
|
7875
|
+
const setLabels = /* @__PURE__ */ new Map();
|
|
7876
|
+
const labelsIn = (s) => {
|
|
7877
|
+
let byType = setLabels.get(s);
|
|
7878
|
+
if (byType) return byType;
|
|
7879
|
+
byType = /* @__PURE__ */ new Map();
|
|
7880
|
+
for (const m of setMembers[s]) for (const [t, l] of traces[group[m]]) {
|
|
7881
|
+
const entry = byType.get(t) ?? {
|
|
7882
|
+
labels: /* @__PURE__ */ new Set(),
|
|
7883
|
+
n: 0
|
|
7884
|
+
};
|
|
7885
|
+
entry.labels.add(l);
|
|
7886
|
+
entry.n++;
|
|
7887
|
+
byType.set(t, entry);
|
|
7888
|
+
}
|
|
7889
|
+
setLabels.set(s, byType);
|
|
7890
|
+
return byType;
|
|
7891
|
+
};
|
|
7892
|
+
const someDiffers = (s, u, mine) => {
|
|
7893
|
+
const entry = labelsIn(s).get(u);
|
|
7894
|
+
if (entry === void 0) return mine !== void 0;
|
|
7895
|
+
if (entry.n < setMembers[s].length) return true;
|
|
7896
|
+
return entry.labels.size > 1 || !entry.labels.has(mine ?? "");
|
|
7897
|
+
};
|
|
7898
|
+
const extraDepthsOf = /* @__PURE__ */ new Map();
|
|
7899
|
+
const extraDepths = (s) => {
|
|
7900
|
+
let depthsSet = extraDepthsOf.get(s);
|
|
7901
|
+
if (depthsSet) return depthsSet;
|
|
7902
|
+
depthsSet = new Set(supersetSets[s].flatMap((t) => {
|
|
7903
|
+
const rep = setMembers[t][0];
|
|
7904
|
+
return shown[rep].filter(([u, l]) => !isQualification(u) && !setSets[s].has(partKey(u, l))).map(([u]) => depths[group[rep]].get(u));
|
|
7905
|
+
}));
|
|
7906
|
+
extraDepthsOf.set(s, depthsSet);
|
|
7907
|
+
return depthsSet;
|
|
7908
|
+
};
|
|
7909
|
+
const picks = /* @__PURE__ */ new Map();
|
|
7910
|
+
group.forEach((i, k) => {
|
|
7911
|
+
if (!bare[k]) return;
|
|
7912
|
+
const peers = supersetSets[sigOf[k]];
|
|
7913
|
+
const kindDepths = extraDepths(sigOf[k]);
|
|
7914
|
+
const sameKind = (u) => kindDepths.has(depths[i].get(u)) ? 1 : 0;
|
|
7915
|
+
const candidates = [...traces[i].keys()].filter((u) => !minimized.has(u) && !isForced(u)).filter((u) => peers.some((t) => someDiffers(t, u, traces[i].get(u)))).sort((a, b) => sameKind(b) - sameKind(a) || byImportance(a, b));
|
|
7916
|
+
for (const u of candidates) {
|
|
7917
|
+
const label = render(i, /* @__PURE__ */ new Set([...shownTypes(k), u]));
|
|
7918
|
+
if (label !== void 0 && isFree(label)) {
|
|
7919
|
+
picks.set(i, {
|
|
7920
|
+
type: u,
|
|
7921
|
+
label
|
|
7922
|
+
});
|
|
7923
|
+
break;
|
|
7924
|
+
}
|
|
7925
|
+
}
|
|
7926
|
+
});
|
|
7927
|
+
if (picks.size === 0) return false;
|
|
7928
|
+
if (labelShown && key !== "") {
|
|
7929
|
+
const picked = [...new Set([...picks.values()].map((p) => p.type))];
|
|
7930
|
+
const full = group.map((i, k) => render(i, /* @__PURE__ */ new Set([...shownTypes(k), ...picked]))).filter((l) => l !== void 0);
|
|
7931
|
+
if (full.length === group.length && tryApply(group, full)) return true;
|
|
7932
|
+
}
|
|
7933
|
+
const proposed = new Map([...picks].map(([i, p]) => [i, p.label]));
|
|
7934
|
+
for (let changed = true; changed;) {
|
|
7935
|
+
changed = false;
|
|
7936
|
+
const firstOld = /* @__PURE__ */ new Map();
|
|
7937
|
+
for (const [i, l] of proposed) {
|
|
7938
|
+
const old = firstOld.get(l);
|
|
7939
|
+
if (old === void 0) firstOld.set(l, patched[i]);
|
|
7940
|
+
else if (old !== patched[i]) changed = proposed.delete(i);
|
|
7941
|
+
}
|
|
7942
|
+
const kept = new Set(bareMembers.filter((i) => !proposed.has(i)).map((i) => patched[i]));
|
|
7943
|
+
for (const [i, l] of proposed) if (kept.has(l)) changed = proposed.delete(i);
|
|
7944
|
+
}
|
|
7945
|
+
for (const i of bareMembers) addCount(patched[i], -1);
|
|
7946
|
+
for (const i of bareMembers) {
|
|
7947
|
+
patched[i] = proposed.get(i) ?? patched[i];
|
|
7948
|
+
addCount(patched[i], 1);
|
|
7949
|
+
}
|
|
7950
|
+
return proposed.size > 0;
|
|
7951
|
+
};
|
|
7952
|
+
if (sharedLabels && sharedMax >= unevenMax && tryApply(group, sharedLabels)) continue;
|
|
7953
|
+
if (applyBareFix()) continue;
|
|
7954
|
+
if (sharedLabels && sharedMax < unevenMax) tryApply(group, sharedLabels);
|
|
7809
7955
|
}
|
|
7810
7956
|
return patched;
|
|
7811
7957
|
}
|
|
7812
7958
|
//#endregion
|
|
7813
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
7959
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/render/util/label.js
|
|
7814
7960
|
/** @deprecated Use deriveDistinctLabels */
|
|
7815
7961
|
function deriveLabels(values, getSpec, options = {}) {
|
|
7816
7962
|
return deriveDistinctLabels(values.map(getSpec), options).map((label, i) => ({
|
|
@@ -7819,7 +7965,7 @@ function deriveLabels(values, getSpec, options = {}) {
|
|
|
7819
7965
|
}));
|
|
7820
7966
|
}
|
|
7821
7967
|
//#endregion
|
|
7822
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
7968
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/render/util/pcolumn_data.js
|
|
7823
7969
|
const RT_RESOURCE_MAP = "PColumnData/ResourceMap";
|
|
7824
7970
|
const RT_RESOURCE_MAP_PARTITIONED = "PColumnData/Partitioned/ResourceMap";
|
|
7825
7971
|
const RT_JSON_PARTITIONED = "PColumnData/JsonPartitioned";
|
|
@@ -8117,7 +8263,7 @@ function allPColumnsReady(columns) {
|
|
|
8117
8263
|
return columns.every(isPColumnReady);
|
|
8118
8264
|
}
|
|
8119
8265
|
//#endregion
|
|
8120
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
8266
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/render/util/column_collection.js
|
|
8121
8267
|
function isPColumnValues(value) {
|
|
8122
8268
|
if (!Array.isArray(value)) return false;
|
|
8123
8269
|
if (value.length === 0) return true;
|
|
@@ -8395,7 +8541,7 @@ var PColumnCollection = class {
|
|
|
8395
8541
|
}
|
|
8396
8542
|
};
|
|
8397
8543
|
//#endregion
|
|
8398
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
8544
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/services/service_bridge.js
|
|
8399
8545
|
/**
|
|
8400
8546
|
* Builds a ServiceProxy from a ServiceDispatch.
|
|
8401
8547
|
* Each service method call is forwarded to dispatch.callServiceMethod.
|
|
@@ -8404,7 +8550,7 @@ function createServiceProxy(dispatch) {
|
|
|
8404
8550
|
return ((serviceId) => Object.freeze(Object.fromEntries(dispatch.getServiceMethods(serviceId).map((method) => [method, (...args) => dispatch.callServiceMethod(serviceId, method, ...args)]))));
|
|
8405
8551
|
}
|
|
8406
8552
|
//#endregion
|
|
8407
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
8553
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/services/get_services.js
|
|
8408
8554
|
const cachedServices = /* @__PURE__ */ new WeakMap();
|
|
8409
8555
|
function getService(name, deps) {
|
|
8410
8556
|
const ctx = deps?.ctx ?? getCfgRenderCtx();
|
|
@@ -8418,7 +8564,7 @@ function getService(name, deps) {
|
|
|
8418
8564
|
})();
|
|
8419
8565
|
}
|
|
8420
8566
|
//#endregion
|
|
8421
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
8567
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/render/util/pframe_upgraders.js
|
|
8422
8568
|
function patchInSetFilters(filters) {
|
|
8423
8569
|
const inSetToOrEqual = (predicate) => {
|
|
8424
8570
|
if (predicate.operator !== "InSet") return predicate;
|
|
@@ -8456,7 +8602,7 @@ function patchInSetFilters(filters) {
|
|
|
8456
8602
|
return filters.map((filter) => mapFilter(filter, inSetToOrEqual));
|
|
8457
8603
|
}
|
|
8458
8604
|
//#endregion
|
|
8459
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
8605
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/render/api.js
|
|
8460
8606
|
/**
|
|
8461
8607
|
* Helper function to match domain objects
|
|
8462
8608
|
* @param query Optional domain to match against
|
|
@@ -8905,27 +9051,27 @@ var PluginRenderCtx = class extends RenderCtxBase {
|
|
|
8905
9051
|
}
|
|
8906
9052
|
};
|
|
8907
9053
|
//#endregion
|
|
8908
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
9054
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/plugin_model.js
|
|
8909
9055
|
/** Internal plugin↔block handshake. `Symbol.for` (not `Symbol`) so it stays
|
|
8910
9056
|
* identical across multiple `@platforma-sdk/model` copies in one process. */
|
|
8911
9057
|
const CREATE_PLUGIN_MODEL = Symbol.for("@platforma-sdk/model:createPluginModel");
|
|
8912
9058
|
//#endregion
|
|
8913
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
8914
|
-
const PlatformaSDKVersion = "1.
|
|
9059
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/version.js
|
|
9060
|
+
const PlatformaSDKVersion = "1.85.2";
|
|
8915
9061
|
//#endregion
|
|
8916
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
9062
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/bconfig/types.js
|
|
8917
9063
|
function isConfigLambda(cfgOrFh) {
|
|
8918
9064
|
return cfgOrFh.__renderLambda === true;
|
|
8919
9065
|
}
|
|
8920
9066
|
//#endregion
|
|
8921
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
9067
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/bconfig/normalization.js
|
|
8922
9068
|
function downgradeCfgOrLambda(data) {
|
|
8923
9069
|
if (data === void 0) return void 0;
|
|
8924
9070
|
if (isConfigLambda(data)) return data.handle;
|
|
8925
9071
|
return data;
|
|
8926
9072
|
}
|
|
8927
9073
|
//#endregion
|
|
8928
|
-
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*
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/** Create id for column copy with added keys in axes domains */
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return rawPool.map((b) => `${b.blockId}\x1f${b.prodCtx ?? ""}\x1f${b.stagingCtx ?? ""}\x1f${b.prodIncomplete ? 1 : 0}\x1f${b.stagingIncomplete ? 1 : 0}`).join(" ");
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|
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|
|
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|
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|
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|
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@@ -11628,7 +11774,7 @@ function ColumnRecipeGetStatus(id, opts = {}) {
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const ColumnRecipe = Object.assign(ColumnRecipeBuild, { getStatus: ColumnRecipeGetStatus });
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|
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/**
|
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|
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|
|
@@ -11799,7 +11945,7 @@ function referencedUniIdsOf(key) {
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return /* @__PURE__ */ new Set([key.column, ...(key.path ?? []).map((item) => item.column)]);
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//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
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//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/columns/column.js
|
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|
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|
|
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* - string id (`PObjectId` / `ColumnUniversalId`) → {@link ColumnRecipe}
|
|
@@ -11813,7 +11959,7 @@ function Column(source, opts) {
|
|
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|
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|
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/**
|
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|
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|
|
@@ -11922,7 +12068,7 @@ function defaultCtxSources(ctx) {
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|
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|
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|
|
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|
|
@@ -12053,7 +12199,7 @@ function hasSingleDataColumn(recipe) {
|
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|
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|
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//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/pframe_utils/columns.js
|
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function getAllRelatedColumns(ctx, predicate) {
|
|
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|
|
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|
|
@@ -12129,7 +12275,7 @@ function discoverIntegrableColumnIds(ctx, rootColumns) {
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|
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|
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|
|
@@ -12158,7 +12304,7 @@ function createPFrameForGraphs(ctx, blockColumns) {
|
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|
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//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/components/PlDatasetSelector/dataset_selection.js
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|
|
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|
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|
|
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|
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|
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|
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|
|
@@ -12226,7 +12372,7 @@ function buildRefMap(entries) {
|
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|
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//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/components/PlDatasetSelector/enrichment_discovery.js
|
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|
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|
|
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|
|
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|
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|
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|
|
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|
|
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|
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|
|
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|
|
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|
|
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const options = ctx.resultPool.getOptions(primaryPredicate, { refsWithEnrichments: true });
|
|
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const options = ctx.resultPool.getOptions(primaryPredicate, { refsWithEnrichments: opts?.requireEnrichments ?? true });
|
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|
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|
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|
|
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|
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|
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|
|
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|
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|
|
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|
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/**
|
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|
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|
|
@@ -12818,7 +12964,7 @@ const REQUIRED_KEYS_BY_TYPE = {
|
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|
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|
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|
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|
|
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|
|
@@ -13176,7 +13322,7 @@ function parseLegacyLeafColumn(s) {
|
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|
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|
|
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/** Adapt a {@link ColumnRecipe} to the plain {@link RuleColumn} shape. */
|
|
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function toRuleColumn(col) {
|
|
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|
return {
|
|
@@ -13274,7 +13420,7 @@ function deriveAllLabels(options) {
|
|
|
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|
})), deriveLabelsOptions).reduce((acc, label, index) => (acc[columns[index].id] = label, acc), {});
|
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//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/components/PlDataTable/createPlDataTable/createPTableDefV3.js
|
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/**
|
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|
|
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|
* outer-joined subtree: `getQuery()` encodes its linker chain, and its
|
|
@@ -13338,7 +13484,7 @@ function columnToJoinEntry(col, qualifications) {
|
|
|
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|
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|
|
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|
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|
//#endregion
|
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|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
13487
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/components/PlDataTable/columnResolver.js
|
|
13342
13488
|
function createColumnResolver(columns) {
|
|
13343
13489
|
const axisIds = [];
|
|
13344
13490
|
for (const c of columns) for (const ax of c.getSpec().axesSpec) axisIds.push(getAxisId(ax));
|
|
@@ -13360,7 +13506,7 @@ function createColumnResolver(columns) {
|
|
|
13360
13506
|
};
|
|
13361
13507
|
}
|
|
13362
13508
|
//#endregion
|
|
13363
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
13509
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/components/PlDataTable/createPlDataTable/discoverColumns.js
|
|
13364
13510
|
/**
|
|
13365
13511
|
* Discover columns from sources/anchors and split them into primary
|
|
13366
13512
|
* (direct anchor hits — zero-hop, query is a bare column) and secondary
|
|
@@ -13406,7 +13552,7 @@ function discoverLabelColumns(ctx, primary) {
|
|
|
13406
13552
|
}).getColumns();
|
|
13407
13553
|
}
|
|
13408
13554
|
//#endregion
|
|
13409
|
-
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.
|
|
13555
|
+
//#region ../node_modules/.pnpm/@platforma-sdk+model@1.85.2/node_modules/@platforma-sdk/model/dist/components/PlDataTable/createPlDataTable/createPlDataTableV3.js
|
|
13410
13556
|
function createPlDataTableV3(ctx, options) {
|
|
13411
13557
|
const state = upgradePlDataTableStateV2(options.tableState);
|
|
13412
13558
|
const primaryJoinType = options.primaryJoinType ?? "full";
|
|
@@ -13965,6 +14111,52 @@ function isOnAnchorAxes(spec, anchorSpec) {
|
|
|
13965
14111
|
const anchorAxes = new Set(anchorSpec.axesSpec.map(canonicalizeAxisId));
|
|
13966
14112
|
return spec.axesSpec.every((axis) => anchorAxes.has(canonicalizeAxisId(axis)));
|
|
13967
14113
|
}
|
|
14114
|
+
/** Axis names that key a dataset's records. See {@link recordSource} for the producers. */
|
|
14115
|
+
const RECORD_AXIS_NAMES = /* @__PURE__ */ new Set([
|
|
14116
|
+
"pl7.app/vdj/clonotypeKey",
|
|
14117
|
+
"pl7.app/vdj/scClonotypeKey",
|
|
14118
|
+
"pl7.app/variantKey"
|
|
14119
|
+
]);
|
|
14120
|
+
/** The anchor's record axis, found by name, not by position. */
|
|
14121
|
+
function findRecordAxis(anchorSpec) {
|
|
14122
|
+
return anchorSpec.axesSpec.find((axis) => RECORD_AXIS_NAMES.has(axis.name));
|
|
14123
|
+
}
|
|
14124
|
+
/**
|
|
14125
|
+
* True when the axis keys the records of a dataset other than the anchor's.
|
|
14126
|
+
*
|
|
14127
|
+
* The anchor's record axis domain is its dataset identity (run id, chain, key structure); a
|
|
14128
|
+
* record axis of the same dataset carries all of it, a narrower one (e.g. per chain) adds
|
|
14129
|
+
* keys. A record axis without that identity belongs to another dataset. An undomained
|
|
14130
|
+
* anchor record axis gives no identity to compare, so only that exact axis counts as own.
|
|
14131
|
+
* An anchor with no record axis has no identity at all, and nothing counts as foreign.
|
|
14132
|
+
*/
|
|
14133
|
+
function isOtherDatasetRecordAxis(axis, anchorSpec) {
|
|
14134
|
+
if (!RECORD_AXIS_NAMES.has(axis.name)) return false;
|
|
14135
|
+
const anchorRecordAxis = findRecordAxis(anchorSpec);
|
|
14136
|
+
if (anchorRecordAxis === void 0) return false;
|
|
14137
|
+
const identity = Object.entries(anchorRecordAxis.domain ?? {});
|
|
14138
|
+
if (identity.length === 0) return canonicalizeAxisId(axis) !== canonicalizeAxisId(anchorRecordAxis);
|
|
14139
|
+
return !identity.every(([key, value]) => axis.domain?.[key] === value);
|
|
14140
|
+
}
|
|
14141
|
+
/**
|
|
14142
|
+
* True when the column, or a linker it was reached through, is keyed by another dataset's
|
|
14143
|
+
* records — e.g. a single-cell reference joined to the anchor by VDJ Integration.
|
|
14144
|
+
*
|
|
14145
|
+
* Links inside the anchor's own dataset (clusters, lineages) never cross a foreign record
|
|
14146
|
+
* axis and do not count.
|
|
14147
|
+
*/
|
|
14148
|
+
function isFromAnotherDataset(spec, linkerSpecs, anchorSpec) {
|
|
14149
|
+
return [spec, ...linkerSpecs].some((s) => s.axesSpec.some((axis) => isOtherDatasetRecordAxis(axis, anchorSpec)));
|
|
14150
|
+
}
|
|
14151
|
+
/**
|
|
14152
|
+
* True when every axis of the column is one of the anchor's axes or an axis a linker on its
|
|
14153
|
+
* path maps the anchor's records to (a cluster, a lineage). Such a column resolves to one
|
|
14154
|
+
* value per anchor record; a column with an unlinked extra axis (e.g. a contrast) does not.
|
|
14155
|
+
*/
|
|
14156
|
+
function isKeyedByAnchorRecords(spec, linkerSpecs, anchorSpec) {
|
|
14157
|
+
const reachable = new Set([anchorSpec, ...linkerSpecs].flatMap((s) => s.axesSpec.map(canonicalizeAxisId)));
|
|
14158
|
+
return spec.axesSpec.every((axis) => reachable.has(canonicalizeAxisId(axis)));
|
|
14159
|
+
}
|
|
13968
14160
|
/** Traversal scope shared by every anchored discovery in the model: filter and ranking
|
|
13969
14161
|
* options, defaults, the MSA frame and the results table. */
|
|
13970
14162
|
const ANCHORED_DISCOVERY = {
|
|
@@ -13989,6 +14181,66 @@ function isRankableMatch(c, anchorSpec, rankedColumnIds) {
|
|
|
13989
14181
|
if (rankedColumnIds.has(extractPObjectId(c.id))) return true;
|
|
13990
14182
|
return !isPresenceOnlyColumn(c.getSpec(), anchorSpec);
|
|
13991
14183
|
}
|
|
14184
|
+
const MAX_RANKING_WEIGHT = 1e3;
|
|
14185
|
+
/**
|
|
14186
|
+
* Whether a stored weight is one the score can use.
|
|
14187
|
+
*/
|
|
14188
|
+
function rankingWeightError(weight) {
|
|
14189
|
+
if (!Number.isFinite(weight)) return "Not a number";
|
|
14190
|
+
if (weight <= 0) return `Above 0`;
|
|
14191
|
+
if (weight > 1e3) return `Max ${MAX_RANKING_WEIGHT}`;
|
|
14192
|
+
}
|
|
14193
|
+
function isUsableRankingWeight(weight) {
|
|
14194
|
+
return rankingWeightError(weight) === void 0;
|
|
14195
|
+
}
|
|
14196
|
+
/**
|
|
14197
|
+
* Fills in the weight of every ranking row that has none.
|
|
14198
|
+
*
|
|
14199
|
+
* Every row gets the same weight. A list arriving without weights was a priority order and stays
|
|
14200
|
+
* one — the block migrates into `priority` mode, where weights go unused — so they carry no
|
|
14201
|
+
* ordering of their own and start level for the balanced score.
|
|
14202
|
+
*/
|
|
14203
|
+
function withRankingWeights(rows) {
|
|
14204
|
+
if (!Array.isArray(rows)) return [];
|
|
14205
|
+
return rows.map((row) => ({
|
|
14206
|
+
...row,
|
|
14207
|
+
weight: row.weight ?? 1
|
|
14208
|
+
}));
|
|
14209
|
+
}
|
|
14210
|
+
/** Each weight as a fraction of all of them: `w / Σw`. Zero-sum lists read as equal. */
|
|
14211
|
+
function normalizeWeights(weights) {
|
|
14212
|
+
const total = weights.reduce((sum, w) => sum + w, 0);
|
|
14213
|
+
if (!(total > 0)) return weights.map(() => 1 / weights.length);
|
|
14214
|
+
return weights.map((w) => w / total);
|
|
14215
|
+
}
|
|
14216
|
+
/**
|
|
14217
|
+
* Which level a ranking metric acts on: cluster-level when its axes do not include the
|
|
14218
|
+
* anchor's record axis.
|
|
14219
|
+
*/
|
|
14220
|
+
function rankingLevelOf(spec, anchorSpec) {
|
|
14221
|
+
const recordAxisName = anchorSpec.axesSpec[1]?.name;
|
|
14222
|
+
if (recordAxisName === void 0) return "clonotype";
|
|
14223
|
+
return spec.axesSpec.some((axis) => axis.name === recordAxisName) ? "clonotype" : "cluster";
|
|
14224
|
+
}
|
|
14225
|
+
/** What one record is called: Clonotype, Peptide, Variant, or Sequence when unplaceable. */
|
|
14226
|
+
function recordLabel(anchorSpec) {
|
|
14227
|
+
switch (recordSource(anchorSpec)) {
|
|
14228
|
+
case "peptide": return "Peptide";
|
|
14229
|
+
case "amplicon": return "Variant";
|
|
14230
|
+
case "vdj": return "Clonotype";
|
|
14231
|
+
default: return "Sequence";
|
|
14232
|
+
}
|
|
14233
|
+
}
|
|
14234
|
+
/**
|
|
14235
|
+
* What each level is called, for this dataset. Model-side because `PlDropdown` reads its
|
|
14236
|
+
* `group` off the option itself.
|
|
14237
|
+
*/
|
|
14238
|
+
function rankingLevelLabels(anchorSpec) {
|
|
14239
|
+
return {
|
|
14240
|
+
cluster: "Cluster",
|
|
14241
|
+
clonotype: recordLabel(anchorSpec)
|
|
14242
|
+
};
|
|
14243
|
+
}
|
|
13992
14244
|
/**
|
|
13993
14245
|
* Collapses discovery results to one recipe per storage column, first hit wins.
|
|
13994
14246
|
*
|
|
@@ -14032,33 +14284,80 @@ const IN_VIVO_MUTATION_COLUMNS = /* @__PURE__ */ new Set([
|
|
|
14032
14284
|
"pl7.app/vdj/sequence/nAAMutationsCDR",
|
|
14033
14285
|
"pl7.app/vdj/sequence/nAAMutationsFWR"
|
|
14034
14286
|
]);
|
|
14035
|
-
const
|
|
14036
|
-
|
|
14037
|
-
|
|
14038
|
-
|
|
14039
|
-
|
|
14040
|
-
|
|
14041
|
-
|
|
14042
|
-
|
|
14043
|
-
|
|
14044
|
-
|
|
14045
|
-
|
|
14046
|
-
|
|
14047
|
-
|
|
14048
|
-
|
|
14049
|
-
|
|
14050
|
-
|
|
14051
|
-
"pl7.app/vdj/
|
|
14052
|
-
"pl7.app/
|
|
14053
|
-
|
|
14054
|
-
|
|
14055
|
-
|
|
14056
|
-
|
|
14057
|
-
|
|
14058
|
-
|
|
14059
|
-
|
|
14060
|
-
|
|
14061
|
-
|
|
14287
|
+
const IN_VIVO_RANKING_PRIORITY = [{ names: ["pl7.app/vdj/repertoireScore"] }, { names: ["pl7.app/developabilityScore", "pl7.app/vdj/developabilityScore"] }];
|
|
14288
|
+
const IN_VIVO_FILTER_PRIORITY = [
|
|
14289
|
+
{
|
|
14290
|
+
names: ["pl7.app/vdj/sequence/fractionCDRMutations"],
|
|
14291
|
+
default: {
|
|
14292
|
+
type: "number_greaterThan",
|
|
14293
|
+
reference: .5
|
|
14294
|
+
}
|
|
14295
|
+
},
|
|
14296
|
+
{
|
|
14297
|
+
names: ["pl7.app/vdj/sequence/nMutations"],
|
|
14298
|
+
default: {
|
|
14299
|
+
type: "number_greaterThanOrEqualTo",
|
|
14300
|
+
reference: 3
|
|
14301
|
+
}
|
|
14302
|
+
},
|
|
14303
|
+
{ names: ["pl7.app/developabilityRisk", "pl7.app/vdj/developabilityRisk"] },
|
|
14304
|
+
{ names: ["pl7.app/vdj/isProductive"] }
|
|
14305
|
+
];
|
|
14306
|
+
/** In Vitro preset rankings, shared with the peptide preset. Max Frequency precedes
|
|
14307
|
+
* Developability cost as the first per-element criterion: enrichment run on clusters gives a
|
|
14308
|
+
* cluster's members one shared Max Log2FC, so only a per-element value orders them. */
|
|
14309
|
+
const IN_VITRO_RANKING_PRIORITY = [
|
|
14310
|
+
{
|
|
14311
|
+
names: ["pl7.app/enrichment"],
|
|
14312
|
+
domain: { "pl7.app/enrichment/type": "max" }
|
|
14313
|
+
},
|
|
14314
|
+
{ names: ["pl7.app/vdj/enrichment"] },
|
|
14315
|
+
{ names: ["pl7.app/maxFrequency"] },
|
|
14316
|
+
{ names: ["pl7.app/developabilityScore", "pl7.app/vdj/developabilityScore"] },
|
|
14317
|
+
{
|
|
14318
|
+
names: ["pl7.app/enrichment"],
|
|
14319
|
+
domain: { "pl7.app/enrichment/type": "comparison" }
|
|
14320
|
+
}
|
|
14321
|
+
];
|
|
14322
|
+
const IN_VITRO_FILTER_PRIORITY = [
|
|
14323
|
+
{ names: ["pl7.app/vdj/bindingSpecificity"] },
|
|
14324
|
+
{ names: ["pl7.app/enrichmentQuality", "pl7.app/vdj/enrichmentQuality"] },
|
|
14325
|
+
{
|
|
14326
|
+
names: ["pl7.app/enrichment"],
|
|
14327
|
+
domain: { "pl7.app/enrichment/type": "max" }
|
|
14328
|
+
},
|
|
14329
|
+
{ names: ["pl7.app/vdj/enrichment"] },
|
|
14330
|
+
{
|
|
14331
|
+
names: ["pl7.app/enrichment"],
|
|
14332
|
+
domain: { "pl7.app/enrichment/type": "comparison" }
|
|
14333
|
+
},
|
|
14334
|
+
{ names: ["pl7.app/developabilityRisk", "pl7.app/vdj/developabilityRisk"] },
|
|
14335
|
+
{ names: ["pl7.app/vdj/isProductive"] }
|
|
14336
|
+
];
|
|
14337
|
+
function priorityIndex(entries) {
|
|
14338
|
+
const index = /* @__PURE__ */ new Map();
|
|
14339
|
+
entries.forEach((entry, rank) => entry.names.forEach((name) => {
|
|
14340
|
+
const claims = index.get(name);
|
|
14341
|
+
if (claims) claims.push({
|
|
14342
|
+
rank,
|
|
14343
|
+
domain: entry.domain
|
|
14344
|
+
});
|
|
14345
|
+
else index.set(name, [{
|
|
14346
|
+
rank,
|
|
14347
|
+
domain: entry.domain
|
|
14348
|
+
}]);
|
|
14349
|
+
}));
|
|
14350
|
+
return index;
|
|
14351
|
+
}
|
|
14352
|
+
const IN_VIVO_RANKING_INDEX = priorityIndex(IN_VIVO_RANKING_PRIORITY);
|
|
14353
|
+
const IN_VIVO_FILTER_INDEX = priorityIndex(IN_VIVO_FILTER_PRIORITY);
|
|
14354
|
+
const IN_VITRO_RANKING_INDEX = priorityIndex(IN_VITRO_RANKING_PRIORITY);
|
|
14355
|
+
const IN_VITRO_FILTER_INDEX = priorityIndex(IN_VITRO_FILTER_PRIORITY);
|
|
14356
|
+
/** The rank `spec` holds, or `undefined` when no entry claims it — so a list is both the
|
|
14357
|
+
* allowlist and the priority. First match wins: narrower entries come first. */
|
|
14358
|
+
function presetPriorityOf(spec, index) {
|
|
14359
|
+
return index.get(spec.name)?.find(({ domain }) => Object.entries(domain ?? {}).every(([key, value]) => spec.domain?.[key] === value))?.rank;
|
|
14360
|
+
}
|
|
14062
14361
|
/**
|
|
14063
14362
|
* Builds a host-driven {@link ColumnsCollection} over the upstream result pool
|
|
14064
14363
|
* and computes column metadata (scores, defaults, presets).
|
|
@@ -14082,21 +14381,30 @@ function buildCollection(inputAnchor, inputFilter) {
|
|
|
14082
14381
|
...ANCHORED_DISCOVERY,
|
|
14083
14382
|
exclude: discoveryExcludeSelectors(sampleAxisName)
|
|
14084
14383
|
}).getColumns()).filter(isSelectableMatch);
|
|
14384
|
+
let scoresPending = false;
|
|
14085
14385
|
const scores = allMatches.filter((c) => {
|
|
14086
14386
|
const spec = c.getSpec();
|
|
14087
|
-
|
|
14387
|
+
if (spec.annotations?.[Annotation.IsScore] !== "true") return false;
|
|
14388
|
+
let linkerSpecs;
|
|
14389
|
+
try {
|
|
14390
|
+
linkerSpecs = collectLinkerColumns(c).map((l) => l.getSpec());
|
|
14391
|
+
} catch (e) {
|
|
14392
|
+
if (!(e instanceof ColumnAbsentError)) scoresPending = true;
|
|
14393
|
+
return false;
|
|
14394
|
+
}
|
|
14395
|
+
return isKeyedByAnchorRecords(spec, linkerSpecs, anchorSpec) && !isFromAnotherDataset(spec, linkerSpecs, anchorSpec);
|
|
14088
14396
|
});
|
|
14089
14397
|
const defaultCandidates = defaultsForSubset(scores, inputFilter && anchorInitializedId(inputFilter));
|
|
14090
|
-
const
|
|
14398
|
+
const presets = computePresets(defaultCandidates, computeDefaultFilters(defaultCandidates, inputAnchor), inputAnchor, anchorSpec);
|
|
14091
14399
|
return {
|
|
14092
14400
|
collection,
|
|
14093
14401
|
anchorSpec,
|
|
14094
14402
|
sampleAxisName,
|
|
14403
|
+
scoresPending,
|
|
14095
14404
|
meta: {
|
|
14096
14405
|
allMatches,
|
|
14097
14406
|
scores,
|
|
14098
|
-
|
|
14099
|
-
...computePresets(defaultCandidates, defaultFilters, inputAnchor, anchorSpec)
|
|
14407
|
+
...presets
|
|
14100
14408
|
}
|
|
14101
14409
|
};
|
|
14102
14410
|
}
|
|
@@ -14192,77 +14500,62 @@ function hasGeneCalls(anchorSpec) {
|
|
|
14192
14500
|
}
|
|
14193
14501
|
function computePresets(scores, defaultFilters, anchorRef, anchorSpec) {
|
|
14194
14502
|
const usesPeptidePreset = isPeptideOrAmplicon(anchorSpec);
|
|
14195
|
-
const
|
|
14196
|
-
const hasRepertoireScore = repertoireScore !== void 0;
|
|
14503
|
+
const hasRepertoireScore = scores.some((s) => s.getSpec().name === REPERTOIRE_SCORE_COLUMN_NAME);
|
|
14197
14504
|
const isEnrichmentColumn = (name) => name.startsWith("pl7.app/enrichment") || name.startsWith("pl7.app/vdj/enrichment");
|
|
14198
14505
|
const hasEnrichmentScores = scores.some((s) => isEnrichmentColumn(s.getSpec().name));
|
|
14199
14506
|
const detectedPreset = usesPeptidePreset ? "peptide" : hasRepertoireScore ? "in-vivo" : hasEnrichmentScores ? "in-vitro" : void 0;
|
|
14200
|
-
const defaultRankingOrder = scores.filter((s) => s.getSpec().valueType !== "String").filter((s) => !hasRepertoireScore ||
|
|
14507
|
+
const defaultRankingOrder = scores.filter((s) => s.getSpec().valueType !== "String").filter((s) => !hasRepertoireScore || !IN_VIVO_MUTATION_COLUMNS.has(s.getSpec().name)).map((s) => ({
|
|
14201
14508
|
id: `default-rank-${s.id}`,
|
|
14202
14509
|
value: matchToColumnId(s, anchorRef),
|
|
14203
14510
|
rankingOrder: s.getSpec().annotations?.[Annotation.Score.RankingOrder] ?? "decreasing",
|
|
14511
|
+
weight: 1,
|
|
14204
14512
|
isExpanded: false
|
|
14205
14513
|
}));
|
|
14206
|
-
|
|
14207
|
-
|
|
14208
|
-
|
|
14209
|
-
|
|
14210
|
-
|
|
14211
|
-
|
|
14212
|
-
|
|
14213
|
-
|
|
14214
|
-
|
|
14514
|
+
const specByColumnId = new Map(scores.map((s) => [matchToColumnId(s, anchorRef).column, s.getSpec()]));
|
|
14515
|
+
/** The rows a preset's list claims, in that list's order. Within one rank, by label —
|
|
14516
|
+
* several per-comparison fold changes read in label order. */
|
|
14517
|
+
const ordered = (rows, columnIdOf, index) => rows.flatMap((row) => {
|
|
14518
|
+
const id = columnIdOf(row);
|
|
14519
|
+
const spec = specByColumnId.get(id);
|
|
14520
|
+
if (spec === void 0) return [];
|
|
14521
|
+
const rank = presetPriorityOf(spec, index);
|
|
14522
|
+
return rank === void 0 ? [] : [{
|
|
14523
|
+
row,
|
|
14524
|
+
rank,
|
|
14525
|
+
label: readAnnotation(spec, Annotation.Label) ?? "",
|
|
14526
|
+
id: id ?? ""
|
|
14527
|
+
}];
|
|
14528
|
+
}).sort((a, b) => a.rank - b.rank || a.label.localeCompare(b.label) || (a.id < b.id ? -1 : a.id > b.id ? 1 : 0)).map(({ row }) => row);
|
|
14529
|
+
const rankingOrderFor = (priority) => ordered(defaultRankingOrder, (r) => r.value?.column, priority);
|
|
14530
|
+
/** A preset's default filters. An entry carrying its own `default` overrides the column's
|
|
14531
|
+
* cutoff, and reaches columns that have none and so never entered `defaultFilters`. */
|
|
14532
|
+
const filtersFor = (priority, index) => {
|
|
14533
|
+
const supplied = priority.flatMap((entry, rank) => {
|
|
14534
|
+
const override = entry.default;
|
|
14535
|
+
if (override === void 0) return [];
|
|
14536
|
+
return scores.filter((score) => presetPriorityOf(score.getSpec(), index) === rank).map((score) => ({
|
|
14537
|
+
column: matchToColumnId(score, anchorRef),
|
|
14538
|
+
default: { ...override }
|
|
14539
|
+
}));
|
|
14540
|
+
});
|
|
14541
|
+
const overridden = new Set(supplied.map((f) => f.column.column));
|
|
14542
|
+
const fromCutoffs = defaultFilters.filter((f) => !overridden.has(f.column.column));
|
|
14543
|
+
return ordered([...supplied, ...fromCutoffs], (f) => f.column.column, index);
|
|
14544
|
+
};
|
|
14215
14545
|
const inVitroDefaults = {
|
|
14216
|
-
rankingOrder:
|
|
14217
|
-
|
|
14218
|
-
if (col === void 0) return false;
|
|
14219
|
-
const specName = specNameByColumnId.get(col);
|
|
14220
|
-
return specName !== void 0 && IN_VITRO_RANKING_SPEC_NAMES.has(specName);
|
|
14221
|
-
}),
|
|
14222
|
-
filters: inVitroFilters
|
|
14546
|
+
rankingOrder: rankingOrderFor(IN_VITRO_RANKING_INDEX),
|
|
14547
|
+
filters: filtersFor(IN_VITRO_FILTER_PRIORITY, IN_VITRO_FILTER_INDEX)
|
|
14223
14548
|
};
|
|
14224
|
-
const inVivoFilters = defaultFilters.filter((f) => {
|
|
14225
|
-
const specName = specNameByColumnId.get(f.column.column);
|
|
14226
|
-
return specName !== void 0 && IN_VIVO_FILTER_SPEC_NAMES.has(specName);
|
|
14227
|
-
});
|
|
14228
|
-
const fractionCDRMutationsCol = scores.find((s) => s.getSpec().name === "pl7.app/vdj/sequence/fractionCDRMutations");
|
|
14229
|
-
if (fractionCDRMutationsCol) inVivoFilters.push({
|
|
14230
|
-
column: matchToColumnId(fractionCDRMutationsCol, anchorRef),
|
|
14231
|
-
default: {
|
|
14232
|
-
type: "number_greaterThan",
|
|
14233
|
-
reference: .5
|
|
14234
|
-
}
|
|
14235
|
-
});
|
|
14236
|
-
const nMutationsCol = scores.find((s) => s.getSpec().name === "pl7.app/vdj/sequence/nMutations");
|
|
14237
|
-
if (nMutationsCol) inVivoFilters.push({
|
|
14238
|
-
column: matchToColumnId(nMutationsCol, anchorRef),
|
|
14239
|
-
default: {
|
|
14240
|
-
type: "number_greaterThanOrEqualTo",
|
|
14241
|
-
reference: 3
|
|
14242
|
-
}
|
|
14243
|
-
});
|
|
14244
14549
|
return {
|
|
14245
|
-
defaultRankingOrder,
|
|
14246
14550
|
hasRepertoireScore,
|
|
14247
14551
|
hasEnrichmentScores,
|
|
14248
14552
|
detectedPreset,
|
|
14249
14553
|
inVivoDefaults: {
|
|
14250
|
-
rankingOrder:
|
|
14251
|
-
|
|
14252
|
-
if (col === void 0) return false;
|
|
14253
|
-
const specName = specNameByColumnId.get(col);
|
|
14254
|
-
return specName !== void 0 && IN_VIVO_RANKING_SPEC_NAMES.has(specName);
|
|
14255
|
-
}),
|
|
14256
|
-
filters: inVivoFilters
|
|
14554
|
+
rankingOrder: rankingOrderFor(IN_VIVO_RANKING_INDEX),
|
|
14555
|
+
filters: filtersFor(IN_VIVO_FILTER_PRIORITY, IN_VIVO_FILTER_INDEX)
|
|
14257
14556
|
},
|
|
14258
14557
|
inVitroDefaults,
|
|
14259
|
-
inPeptideDefaults:
|
|
14260
|
-
rankingOrder: scores.filter((s) => s.getSpec().valueType !== "String").map((s) => ({
|
|
14261
|
-
value: matchToColumnId(s, anchorRef),
|
|
14262
|
-
rankingOrder: s.getSpec().annotations?.[Annotation.Score.RankingOrder] ?? "decreasing"
|
|
14263
|
-
})),
|
|
14264
|
-
filters: defaultFilters
|
|
14265
|
-
}
|
|
14558
|
+
inPeptideDefaults: inVitroDefaults
|
|
14266
14559
|
};
|
|
14267
14560
|
}
|
|
14268
14561
|
function getDefaultBlockLabel(data) {
|
|
@@ -14291,11 +14584,30 @@ function initializedSlotParts(stored) {
|
|
|
14291
14584
|
}
|
|
14292
14585
|
//#endregion
|
|
14293
14586
|
//#region ../model/dist/converters.js
|
|
14294
|
-
|
|
14295
|
-
|
|
14587
|
+
/**
|
|
14588
|
+
* Narrows ranking rows to what the workflow reads.
|
|
14589
|
+
*
|
|
14590
|
+
* In `balanced` mode each row carries its weight as a fraction of all of them.
|
|
14591
|
+
*/
|
|
14592
|
+
function convertRankingOrderUI(rankingOrder, mode) {
|
|
14593
|
+
if (mode !== "balanced") return rankingOrder.map((item) => ({
|
|
14296
14594
|
value: item.value,
|
|
14297
14595
|
rankingOrder: item.rankingOrder
|
|
14298
14596
|
}));
|
|
14597
|
+
const weightNorms = normalizeWeights(rankingOrder.map((item) => item.weight ?? 1));
|
|
14598
|
+
return rankingOrder.map((item, i) => ({
|
|
14599
|
+
value: item.value,
|
|
14600
|
+
rankingOrder: item.rankingOrder,
|
|
14601
|
+
weightNorm: weightNorms[i]
|
|
14602
|
+
}));
|
|
14603
|
+
}
|
|
14604
|
+
/** As {@link convertRankingOrderUI}, keeping `weight` so a template round-trips it. */
|
|
14605
|
+
function convertRankingOrderUIForParams(rankingOrder) {
|
|
14606
|
+
return rankingOrder.map((item) => ({
|
|
14607
|
+
value: item.value,
|
|
14608
|
+
rankingOrder: item.rankingOrder,
|
|
14609
|
+
weight: item.weight
|
|
14610
|
+
}));
|
|
14299
14611
|
}
|
|
14300
14612
|
function convertFilterUI(filters) {
|
|
14301
14613
|
return filters.map((item) => ({
|
|
@@ -14306,7 +14618,7 @@ function convertFilterUI(filters) {
|
|
|
14306
14618
|
//#endregion
|
|
14307
14619
|
//#region ../kind/dist/package.js
|
|
14308
14620
|
var name = "@platforma-open/milaboratories.top-antibodies.kind";
|
|
14309
|
-
var version = "1.
|
|
14621
|
+
var version = "1.2.0";
|
|
14310
14622
|
//#endregion
|
|
14311
14623
|
//#region ../node_modules/.pnpm/@platforma-sdk+block-kind@1.1.0/node_modules/@platforma-sdk/block-kind/dist/params.js
|
|
14312
14624
|
/**
|
|
@@ -14450,7 +14762,7 @@ const isScopedColumnId = (v) => isPlainObject(v) && isPlRef(v.anchorRef) && isSt
|
|
|
14450
14762
|
* produce the moment a predicate is added.
|
|
14451
14763
|
*/
|
|
14452
14764
|
const isFilterPredicate = (v) => isPlainObject(v) && isString(v.type);
|
|
14453
|
-
const isRankingOrder = (v) => isPlainObject(v) && optional(isScopedColumnId)(v.value) && oneOf("increasing", "decreasing")(v.rankingOrder);
|
|
14765
|
+
const isRankingOrder = (v) => isPlainObject(v) && optional(isScopedColumnId)(v.value) && oneOf("increasing", "decreasing")(v.rankingOrder) && optional(isNumber)(v.weight);
|
|
14454
14766
|
const isFilter = (v) => isPlainObject(v) && optional(isScopedColumnId)(v.value) && optional(isFilterPredicate)(v.filter);
|
|
14455
14767
|
/**
|
|
14456
14768
|
* The defaults-init slot, by its envelope only.
|
|
@@ -14488,7 +14800,8 @@ const CONTRACT = {
|
|
|
14488
14800
|
preset: check(oneOf("in-vivo", "in-vitro", "peptide"), "one of: in-vivo, in-vitro, peptide"),
|
|
14489
14801
|
topClonotypes: check(isNumber, "a number"),
|
|
14490
14802
|
kabatNumbering: check(isBoolean, "a boolean"),
|
|
14491
|
-
|
|
14803
|
+
rankingMode: check(oneOf("priority", "balanced"), "one of: priority, balanced"),
|
|
14804
|
+
rankingOrder: check(arrayOf(isRankingOrder), "an array of { value?, rankingOrder: 'increasing' | 'decreasing', weight? } entries"),
|
|
14492
14805
|
filters: check(arrayOf(isFilter), "an array of { value?, filter? } entries"),
|
|
14493
14806
|
diversificationColumn: check(isPlRef, REF),
|
|
14494
14807
|
filtersInitializedForAnchor: check(isInitializedForAnchor, INITIALIZED_SLOT),
|
|
@@ -14556,8 +14869,9 @@ const blockDataModel = new DataModelBuilder({ kind }).from("Ver_2026_02_25").upg
|
|
|
14556
14869
|
input: inputAnchor !== void 0 ? createDatasetSelection(createPrimaryRef(inputAnchor)) : void 0
|
|
14557
14870
|
};
|
|
14558
14871
|
}).migrate("Ver_2026_07_28", (prev) => {
|
|
14559
|
-
const
|
|
14560
|
-
|
|
14872
|
+
const stored = Array.isArray(prev.rankingOrder) ? prev.rankingOrder : [];
|
|
14873
|
+
const rankingOrder = stored.filter((rank) => rank?.value?.column !== REMOVED_IN_VIVO_SCORE_COLUMN_ID);
|
|
14874
|
+
if (rankingOrder.length === stored.length) return { ...prev };
|
|
14561
14875
|
return {
|
|
14562
14876
|
...prev,
|
|
14563
14877
|
rankingOrder,
|
|
@@ -14571,13 +14885,18 @@ const blockDataModel = new DataModelBuilder({ kind }).from("Ver_2026_02_25").upg
|
|
|
14571
14885
|
...prev,
|
|
14572
14886
|
filtersInitializedForAnchor: readInitializedForAnchor(prev.filtersInitializedForAnchor),
|
|
14573
14887
|
rankingsInitializedForAnchor: readInitializedForAnchor(prev.rankingsInitializedForAnchor)
|
|
14888
|
+
})).migrate("Ver_2026_10_08", (prev) => ({
|
|
14889
|
+
...prev,
|
|
14890
|
+
rankingOrder: withRankingWeights(prev.rankingOrder),
|
|
14891
|
+
rankingMode: "priority"
|
|
14574
14892
|
})).init(({ params }) => ({
|
|
14575
14893
|
defaultBlockLabel: params?.defaultBlockLabel ?? getDefaultBlockLabel({}),
|
|
14576
14894
|
customBlockLabel: params?.customBlockLabel ?? "",
|
|
14577
14895
|
input: params?.input,
|
|
14578
14896
|
topClonotypes: params?.topClonotypes ?? 100,
|
|
14579
14897
|
kabatNumbering: params?.kabatNumbering,
|
|
14580
|
-
rankingOrder: params?.rankingOrder ?? [],
|
|
14898
|
+
rankingOrder: withRankingWeights(params?.rankingOrder ?? []),
|
|
14899
|
+
rankingMode: params?.rankingMode ?? "priority",
|
|
14581
14900
|
filters: params?.filters ?? [],
|
|
14582
14901
|
diversificationColumn: params?.diversificationColumn,
|
|
14583
14902
|
tableState: createPlDataTableStateV2(),
|
|
@@ -14626,12 +14945,6 @@ var titles = {
|
|
|
14626
14945
|
};
|
|
14627
14946
|
//#endregion
|
|
14628
14947
|
//#region ../model/dist/index.js
|
|
14629
|
-
const CLUSTERING_TRACE_TYPES = [
|
|
14630
|
-
"milaboratories.clonotype-clustering.clustering",
|
|
14631
|
-
"milaboratories.3d-structure-clustering.clustering",
|
|
14632
|
-
"milaboratories.embedding-clustering.clustering",
|
|
14633
|
-
"milaboratories.lineage-trees.clustering"
|
|
14634
|
-
];
|
|
14635
14948
|
/** Label column keyed by exactly one clonotype/variant key axis. Omitting
|
|
14636
14949
|
* `partialAxesMatch` requires the exact axis set, i.e. `axesSpec.length === 1`. */
|
|
14637
14950
|
const LABEL_KEY_AXIS_SELECTORS = [
|
|
@@ -14723,7 +15036,8 @@ const platforma$1 = BlockModelV3.create({
|
|
|
14723
15036
|
preset: data.preset,
|
|
14724
15037
|
topClonotypes: data.topClonotypes,
|
|
14725
15038
|
kabatNumbering: data.kabatNumbering,
|
|
14726
|
-
|
|
15039
|
+
rankingMode: data.rankingMode,
|
|
15040
|
+
rankingOrder: convertRankingOrderUIForParams(data.rankingOrder),
|
|
14727
15041
|
filters: convertFilterUI(data.filters),
|
|
14728
15042
|
diversificationColumn: data.diversificationColumn,
|
|
14729
15043
|
filtersInitializedForAnchor: readInitializedForAnchor(data.filtersInitializedForAnchor),
|
|
@@ -14734,8 +15048,9 @@ const platforma$1 = BlockModelV3.create({
|
|
|
14734
15048
|
const inputAnchor = getInputAnchorRef(data);
|
|
14735
15049
|
if (inputAnchor === void 0) throw new Error("No input anchor");
|
|
14736
15050
|
if (data.topClonotypes === void 0) throw new Error("No top clonotypes");
|
|
14737
|
-
const rankingOrder = convertRankingOrderUI(data.rankingOrder);
|
|
15051
|
+
const rankingOrder = convertRankingOrderUI(data.rankingOrder, data.rankingMode);
|
|
14738
15052
|
if (rankingOrder.some((order) => order.value === void 0)) throw new Error("Incomplete ranking order");
|
|
15053
|
+
if (data.rankingMode === "balanced" && !data.rankingOrder.every((row) => isUsableRankingWeight(row.weight))) throw new Error(`Ranking weights must be above 0 and at most ${MAX_RANKING_WEIGHT}`);
|
|
14739
15054
|
const filters = convertFilterUI(data.filters);
|
|
14740
15055
|
if (filters.some((filter) => filter.value === void 0)) throw new Error("Incomplete filters");
|
|
14741
15056
|
return {
|
|
@@ -14744,6 +15059,7 @@ const platforma$1 = BlockModelV3.create({
|
|
|
14744
15059
|
inputAnchor,
|
|
14745
15060
|
inputFilter: getInputFilterRef(data),
|
|
14746
15061
|
topClonotypes: data.topClonotypes,
|
|
15062
|
+
rankingMode: data.rankingMode,
|
|
14747
15063
|
rankingOrder,
|
|
14748
15064
|
filters,
|
|
14749
15065
|
kabatNumbering: data.kabatNumbering,
|
|
@@ -14777,7 +15093,15 @@ const platforma$1 = BlockModelV3.create({
|
|
|
14777
15093
|
});
|
|
14778
15094
|
}).output("inputAnchorSpec", (ctx) => {
|
|
14779
15095
|
return getSpecByRef(getInputAnchorRef(ctx.data));
|
|
14780
|
-
}
|
|
15096
|
+
}).output("inputStatus", (ctx) => {
|
|
15097
|
+
const inputAnchor = getInputAnchorRef(ctx.data);
|
|
15098
|
+
const inputKey = inputKeyOf(inputAnchor, getInputFilterRef(ctx.data));
|
|
15099
|
+
if (inputKey === void 0) return void 0;
|
|
15100
|
+
return {
|
|
15101
|
+
inputKey,
|
|
15102
|
+
ready: getSpecByRef(inputAnchor) !== void 0
|
|
15103
|
+
};
|
|
15104
|
+
}).output("isPeptide", (ctx) => {
|
|
14781
15105
|
const keyAxis = getSpecByRef(getInputAnchorRef(ctx.data))?.axesSpec[1];
|
|
14782
15106
|
if (keyAxis?.name !== "pl7.app/variantKey") return false;
|
|
14783
15107
|
const domain = keyAxis.domain ?? {};
|
|
@@ -14787,15 +15111,15 @@ const platforma$1 = BlockModelV3.create({
|
|
|
14787
15111
|
if (domain["pl7.app/repertoire/extractionRunId"] !== void 0) return false;
|
|
14788
15112
|
if (domain["pl7.app/vdj/clonotypingRunId"] !== void 0) return false;
|
|
14789
15113
|
return true;
|
|
14790
|
-
}
|
|
15114
|
+
}).output("modality", (ctx) => {
|
|
14791
15115
|
const spec = getSpecByRef(getInputAnchorRef(ctx.data));
|
|
14792
15116
|
if (!spec) return void 0;
|
|
14793
15117
|
return isPeptideOrAmplicon(spec) ? "peptide" : "antibody_tcr";
|
|
14794
|
-
}
|
|
15118
|
+
}).output("filterConfig", (ctx) => {
|
|
14795
15119
|
const inputAnchor = getInputAnchorRef(ctx.data);
|
|
14796
15120
|
const inputFilter = getInputFilterRef(ctx.data);
|
|
14797
15121
|
const result = buildCollection(inputAnchor, inputFilter);
|
|
14798
|
-
if (!result) return void 0;
|
|
15122
|
+
if (!result || result.scoresPending) return void 0;
|
|
14799
15123
|
const datasetFilterId = inputFilter && anchorInitializedId(inputFilter);
|
|
14800
15124
|
const isDatasetFilter = (c) => datasetFilterId !== void 0 && extractPObjectId(c.id) === datasetFilterId;
|
|
14801
15125
|
const filterableMatches = result.meta.allMatches.filter((c) => !isDatasetFilter(c));
|
|
@@ -14814,7 +15138,6 @@ const platforma$1 = BlockModelV3.create({
|
|
|
14814
15138
|
};
|
|
14815
15139
|
}),
|
|
14816
15140
|
inputKey: inputKeyOf(inputAnchor, inputFilter),
|
|
14817
|
-
defaults: result.meta.defaultFilters,
|
|
14818
15141
|
inVivoDefaults: result.meta.inVivoDefaults.filters,
|
|
14819
15142
|
inVitroDefaults: result.meta.inVitroDefaults.filters,
|
|
14820
15143
|
inPeptideDefaults: result.meta.inPeptideDefaults.filters
|
|
@@ -14823,17 +15146,23 @@ const platforma$1 = BlockModelV3.create({
|
|
|
14823
15146
|
const inputAnchor = getInputAnchorRef(ctx.data);
|
|
14824
15147
|
const inputFilter = getInputFilterRef(ctx.data);
|
|
14825
15148
|
const result = buildCollection(inputAnchor, inputFilter);
|
|
14826
|
-
if (!result) return void 0;
|
|
15149
|
+
if (!result || result.scoresPending) return void 0;
|
|
14827
15150
|
const rankedColumnIds = new Set(ctx.data.rankingOrder.flatMap((r) => r.value ? [r.value.column] : []));
|
|
14828
15151
|
const rankableMatches = result.meta.allMatches.filter((c) => c.getSpec().valueType !== "String").filter((c) => isRankableMatch(c, result.anchorSpec, rankedColumnIds));
|
|
14829
15152
|
const labels = deriveDistinctLabels(rankableMatches.map((c) => c.getSpec()), { includeNativeLabel: true });
|
|
15153
|
+
const levelLabels = rankingLevelLabels(result.anchorSpec);
|
|
15154
|
+
const levelGroups = {
|
|
15155
|
+
cluster: `${levelLabels.cluster} metrics`,
|
|
15156
|
+
clonotype: `${levelLabels.clonotype} metrics`
|
|
15157
|
+
};
|
|
14830
15158
|
return {
|
|
14831
15159
|
options: rankableMatches.map((c, i) => ({
|
|
14832
15160
|
label: labels[i],
|
|
14833
|
-
value: matchToColumnId(c, inputAnchor)
|
|
15161
|
+
value: matchToColumnId(c, inputAnchor),
|
|
15162
|
+
group: levelGroups[rankingLevelOf(c.getSpec(), result.anchorSpec)]
|
|
14834
15163
|
})),
|
|
15164
|
+
levelLabels,
|
|
14835
15165
|
inputKey: inputKeyOf(inputAnchor, inputFilter),
|
|
14836
|
-
defaults: result.meta.defaultRankingOrder,
|
|
14837
15166
|
inVivoDefaults: result.meta.inVivoDefaults.rankingOrder,
|
|
14838
15167
|
inVitroDefaults: result.meta.inVitroDefaults.rankingOrder,
|
|
14839
15168
|
inPeptideDefaults: result.meta.inPeptideDefaults.rankingOrder
|
|
@@ -15039,18 +15368,15 @@ const platforma$1 = BlockModelV3.create({
|
|
|
15039
15368
|
const linkers = ctx.resultPool.getOptions([{
|
|
15040
15369
|
axes: axesToMatch,
|
|
15041
15370
|
annotations: { [Annotation.IsLinkerColumn]: "true" }
|
|
15042
|
-
}]
|
|
15371
|
+
}]);
|
|
15043
15372
|
for (const link of linkers) {
|
|
15044
15373
|
const linkerSpec = getSpecByRef(link.ref);
|
|
15045
15374
|
if (!linkerSpec) continue;
|
|
15046
15375
|
const clusterAxis = linkerSpec.axesSpec.find((axis) => isClusterIdAxisName(axis.name));
|
|
15047
15376
|
if (!clusterAxis) continue;
|
|
15048
15377
|
if (datasetClusteringId !== void 0 && clusterAxis.domain?.["pl7.app/clustering/blockId"] === datasetClusteringId) continue;
|
|
15049
|
-
|
|
15050
|
-
|
|
15051
|
-
const clusteringElement = JSON.parse(linkerSpec.annotations?.[Annotation.Trace] ?? "[]").find((t) => CLUSTERING_TRACE_TYPES.includes(t.type ?? ""));
|
|
15052
|
-
if (clusteringElement?.label) label = clusteringElement.label;
|
|
15053
|
-
} catch {}
|
|
15378
|
+
const trace = readAnnotationJson(linkerSpec, Annotation.Trace);
|
|
15379
|
+
let label = (Array.isArray(trace) ? trace.at(-1)?.label : void 0) || "Cluster";
|
|
15054
15380
|
const clusterSubset = inputSubsetOf(clusterAxis.domain);
|
|
15055
15381
|
if (clusterSubset !== void 0) {
|
|
15056
15382
|
const subsetRef = parseJsonSafely(clusterSubset);
|