@platforma-open/milaboratories.top-antibodies.workflow 4.2.1 → 4.3.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +23 -0
- package/dist/tengo/lib/utils.lib.tengo +8 -3
- package/dist/tengo/tpl/assembling-fasta.plj.gz +0 -0
- package/dist/tengo/tpl/filter-and-sample.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/package.json +7 -7
- package/src/utils.lib.tengo +8 -3
package/.turbo/turbo-build.log
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
WARN Issue while reading "/home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
|
|
2
2
|
|
|
3
|
-
> @platforma-open/milaboratories.top-antibodies.workflow@4.
|
|
3
|
+
> @platforma-open/milaboratories.top-antibodies.workflow@4.3.1 build /home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/workflow
|
|
4
4
|
> shx rm -rf dist && pl-tengo check && pl-tengo build
|
|
5
5
|
|
|
6
6
|
Processing "src/assembling-fasta.tpl.tengo"...
|
package/CHANGELOG.md
CHANGED
|
@@ -1,5 +1,28 @@
|
|
|
1
1
|
# @platforma-open/milaboratories.top-antibodies.workflow
|
|
2
2
|
|
|
3
|
+
## 4.3.1
|
|
4
|
+
|
|
5
|
+
### Patch Changes
|
|
6
|
+
|
|
7
|
+
- a7b65c0: No Op Change To Unblock
|
|
8
|
+
- Updated dependencies [a7b65c0]
|
|
9
|
+
- @platforma-open/milaboratories.top-antibodies.anarci-kabat@1.4.6
|
|
10
|
+
- @platforma-open/milaboratories.top-antibodies.assembling-fasta@1.3.5
|
|
11
|
+
- @platforma-open/milaboratories.top-antibodies.sample-clonotypes@2.2.1
|
|
12
|
+
- @platforma-open/milaboratories.top-antibodies.spectratype@1.8.6
|
|
13
|
+
- @platforma-open/milaboratories.top-antibodies.umap@1.2.6
|
|
14
|
+
|
|
15
|
+
## 4.3.0
|
|
16
|
+
|
|
17
|
+
### Minor Changes
|
|
18
|
+
|
|
19
|
+
- 0a06331: New changeset
|
|
20
|
+
|
|
21
|
+
### Patch Changes
|
|
22
|
+
|
|
23
|
+
- Updated dependencies [0a06331]
|
|
24
|
+
- @platforma-open/milaboratories.top-antibodies.sample-clonotypes@2.2.0
|
|
25
|
+
|
|
3
26
|
## 4.2.1
|
|
4
27
|
|
|
5
28
|
### Patch Changes
|
|
@@ -538,9 +538,14 @@ initializeCloneTable := func(pframes, columns, args, datasetSpec, inputFilterCol
|
|
|
538
538
|
|
|
539
539
|
|
|
540
540
|
|
|
541
|
-
|
|
542
|
-
|
|
543
|
-
|
|
541
|
+
|
|
542
|
+
|
|
543
|
+
|
|
544
|
+
|
|
545
|
+
mainSeqCols := columns.getColumns("mainSeqs")
|
|
546
|
+
for col in columns.getColumns("mainSeqsVdj") {
|
|
547
|
+
mainSeqCols = append(mainSeqCols, col)
|
|
548
|
+
}
|
|
544
549
|
if len(mainSeqCols) > 0 {
|
|
545
550
|
presenceCol := deriveClonotypePresence(mainSeqCols[0], datasetSpec)
|
|
546
551
|
if !is_undefined(presenceCol) {
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
package/package.json
CHANGED
|
@@ -1,16 +1,16 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@platforma-open/milaboratories.top-antibodies.workflow",
|
|
3
|
-
"version": "4.
|
|
3
|
+
"version": "4.3.1",
|
|
4
4
|
"type": "module",
|
|
5
5
|
"description": "Block Workflow",
|
|
6
6
|
"dependencies": {
|
|
7
|
-
"@platforma-sdk/workflow-tengo": "6.6.
|
|
7
|
+
"@platforma-sdk/workflow-tengo": "6.6.5",
|
|
8
8
|
"@platforma-open/milaboratories.software-anarci": "^0.0.3",
|
|
9
|
-
"@platforma-open/milaboratories.top-antibodies.
|
|
10
|
-
"@platforma-open/milaboratories.top-antibodies.
|
|
11
|
-
"@platforma-open/milaboratories.top-antibodies.
|
|
12
|
-
"@platforma-open/milaboratories.top-antibodies.anarci-kabat": "1.4.
|
|
13
|
-
"@platforma-open/milaboratories.top-antibodies.assembling-fasta": "1.3.
|
|
9
|
+
"@platforma-open/milaboratories.top-antibodies.sample-clonotypes": "2.2.1",
|
|
10
|
+
"@platforma-open/milaboratories.top-antibodies.umap": "1.2.6",
|
|
11
|
+
"@platforma-open/milaboratories.top-antibodies.spectratype": "1.8.6",
|
|
12
|
+
"@platforma-open/milaboratories.top-antibodies.anarci-kabat": "1.4.6",
|
|
13
|
+
"@platforma-open/milaboratories.top-antibodies.assembling-fasta": "1.3.5"
|
|
14
14
|
},
|
|
15
15
|
"devDependencies": {
|
|
16
16
|
"@platforma-sdk/tengo-builder": "4.0.9"
|
package/src/utils.lib.tengo
CHANGED
|
@@ -538,9 +538,14 @@ initializeCloneTable := func(pframes, columns, args, datasetSpec, inputFilterCol
|
|
|
538
538
|
// for those columns and are dropped at the relevant FILTER stage instead of
|
|
539
539
|
// being silently dropped before stage tracking. The presence column is a light
|
|
540
540
|
// Int marker — adding the heavy main-sequence column itself would blow up the join.
|
|
541
|
-
|
|
542
|
-
|
|
543
|
-
|
|
541
|
+
// Combine both groups with a loop rather than `append(a, b...)`: Tengo's
|
|
542
|
+
// `append` requires >=2 args, so spreading an empty second group (e.g. the
|
|
543
|
+
// peptide case, which has no VDJ main sequences) would collapse to a
|
|
544
|
+
// single-arg call and fail with "wrong number of arguments".
|
|
545
|
+
mainSeqCols := columns.getColumns("mainSeqs")
|
|
546
|
+
for col in columns.getColumns("mainSeqsVdj") {
|
|
547
|
+
mainSeqCols = append(mainSeqCols, col)
|
|
548
|
+
}
|
|
544
549
|
if len(mainSeqCols) > 0 {
|
|
545
550
|
presenceCol := deriveClonotypePresence(mainSeqCols[0], datasetSpec)
|
|
546
551
|
if !is_undefined(presenceCol) {
|