@platforma-open/milaboratories.top-antibodies.workflow 1.17.3 → 1.17.4

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Files changed (10) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +6 -0
  3. package/dist/tengo/lib/sampled-export-conv.lib.tengo +14 -2
  4. package/dist/tengo/tpl/assembling-fasta.plj.gz +0 -0
  5. package/dist/tengo/tpl/filter-and-sample.plj.gz +0 -0
  6. package/dist/tengo/tpl/main.plj.gz +0 -0
  7. package/package.json +4 -4
  8. package/src/filter-and-sample.tpl.tengo +2 -1
  9. package/src/main.tpl.tengo +2 -1
  10. package/src/sampled-export-conv.lib.tengo +14 -2
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.top-antibodies.workflow@1.17.3 build /home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/workflow
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+ > @platforma-open/milaboratories.top-antibodies.workflow@1.17.4 build /home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/workflow
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  > shx rm -rf dist && pl-tengo check && pl-tengo build
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  Processing "src/assembling-fasta.tpl.tengo"...
package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.top-antibodies.workflow
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+ ## 1.17.4
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+
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+ ### Patch Changes
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+
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+ - 605fdf0: Add domain to exported filter
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+
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  ## 1.17.3
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  ### Patch Changes
package/dist/tengo/lib/sampled-export-conv.lib.tengo CHANGED
@@ -1,6 +1,18 @@
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  ll := import("@platforma-sdk/workflow-tengo:ll")
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+ json := import("json")
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+
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+ getColumns := func(datasetSpec, filterMap, rankingMap, disableClusterRanking, clusterColumn, topClonotypes) {
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+
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+
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+ domain := {
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+ "pl7.app/vdj/filter-map": string(json.encode(filterMap)),
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+ "pl7.app/vdj/ranking-map": string(json.encode(rankingMap)),
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+ "pl7.app/vdj/top-clonotypes": string(topClonotypes)
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+ }
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+ if !disableClusterRanking && clusterColumn != undefined && clusterColumn != "" {
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+ domain["pl7.app/vdj/diversity-column"] = string(json.encode(clusterColumn))
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+ }
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- getColumns := func(datasetSpec) {
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  columns := [{
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  column: "top",
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  id: "link",
@@ -8,7 +20,7 @@ getColumns := func(datasetSpec) {
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  spec: {
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  name: "pl7.app/vdj/lead-selection",
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  valueType: "Int",
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- domain: {},
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+ domain: domain,
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  annotations: {
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  "pl7.app/label": "Selected Leads",
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  "pl7.app/table/visibility": "hidden",
package/dist/tengo/tpl/main.plj.gz CHANGED
Binary file
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@platforma-open/milaboratories.top-antibodies.workflow",
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- "version": "1.17.3",
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+ "version": "1.17.4",
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  "type": "module",
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  "description": "Block Workflow",
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  "dependencies": {
@@ -8,12 +8,12 @@
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  "@platforma-open/milaboratories.software-anarci": "^0.0.3",
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  "@platforma-open/milaboratories.top-antibodies.sample-clonotypes": "1.9.2",
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  "@platforma-open/milaboratories.top-antibodies.spectratype": "1.8.1",
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+ "@platforma-open/milaboratories.top-antibodies.assembling-fasta": "1.3.0",
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  "@platforma-open/milaboratories.top-antibodies.umap": "1.2.1",
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- "@platforma-open/milaboratories.top-antibodies.anarci-kabat": "1.3.0",
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- "@platforma-open/milaboratories.top-antibodies.assembling-fasta": "1.3.0"
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+ "@platforma-open/milaboratories.top-antibodies.anarci-kabat": "1.3.0"
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  },
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  "devDependencies": {
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- "@platforma-sdk/tengo-builder": "2.4.13"
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+ "@platforma-sdk/tengo-builder": "2.4.14"
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  },
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  "scripts": {
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  "build": "shx rm -rf dist && pl-tengo check && pl-tengo build",
package/src/filter-and-sample.tpl.tengo CHANGED
@@ -89,7 +89,8 @@ self.body(func(inputs) {
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  outputs["finalClonotypes"] = finalClonotypes
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  // Export only the sampling column to be used as a filter downstream
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- sampledExportsParams := sampledExportConv.getColumns(datasetSpec)
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+ sampledExportsParams := sampledExportConv.getColumns(datasetSpec, filterMap,
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+ rankingMap, inputs.disableClusterRanking, inputs.rawClusterColumn, topClonotypes)
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  sampledColumnsOnlyPf := xsv.importFile(finalClonotypes, "parquet", sampledExportsParams,
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  {cpu: 1, mem: "16GiB"})
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  outputs["sampledColumnsExport"] = sampledColumnsOnlyPf
package/src/main.tpl.tengo CHANGED
@@ -147,7 +147,8 @@ wf.body(func(args) {
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  datasetSpec: datasetSpec,
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  topClonotypes: args.topClonotypes,
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  disableClusterRanking: args.disableClusterRanking,
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- clusterColumn: clusterColumnHeader
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+ clusterColumn: clusterColumnHeader,
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+ rawClusterColumn: args.clusterColumn
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  })
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  // Get the filtered clonotypes from the template result
package/src/sampled-export-conv.lib.tengo CHANGED
@@ -1,6 +1,18 @@
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  ll := import("@platforma-sdk/workflow-tengo:ll")
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+ json := import("json")
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+
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+ getColumns := func(datasetSpec, filterMap, rankingMap, disableClusterRanking, clusterColumn, topClonotypes) {
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+
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+ // Define domain
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+ domain := {
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+ "pl7.app/vdj/filter-map": string(json.encode(filterMap)),
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+ "pl7.app/vdj/ranking-map": string(json.encode(rankingMap)),
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+ "pl7.app/vdj/top-clonotypes": string(topClonotypes)
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+ }
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+ if !disableClusterRanking && clusterColumn != undefined && clusterColumn != "" {
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+ domain["pl7.app/vdj/diversity-column"] = string(json.encode(clusterColumn))
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+ }
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- getColumns := func(datasetSpec) {
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  columns := [{
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  column: "top",
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  id: "link",
@@ -8,7 +20,7 @@ getColumns := func(datasetSpec) {
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  spec: {
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  name: "pl7.app/vdj/lead-selection",
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  valueType: "Int",
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- domain: {},
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+ domain: domain,
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  annotations: {
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  "pl7.app/label": "Selected Leads",
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  "pl7.app/table/visibility": "hidden",