@platforma-open/milaboratories.top-antibodies.workflow 1.13.0 → 1.13.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +14 -0
- package/dist/tengo/tpl/assembling-fasta.plj.gz +0 -0
- package/dist/tengo/tpl/filter-and-sample.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/package.json +5 -5
- package/src/assembling-fasta.tpl.tengo +0 -3
- package/src/filter-and-sample.tpl.tengo +0 -2
- package/src/prerun.tpl.tengo +1 -1
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.top-antibodies.workflow@1.13.
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> @platforma-open/milaboratories.top-antibodies.workflow@1.13.2 build /home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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Processing "src/assembling-fasta.tpl.tengo"...
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package/CHANGELOG.md
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# @platforma-open/milaboratories.top-antibodies.workflow
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## 1.13.2
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### Patch Changes
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- e17b19a: Remove unused `saveStdoutContent` calls, update sdk
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## 1.13.1
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### Patch Changes
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- 9245274: Fix filter issues related to data types
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- Updated dependencies [9245274]
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- @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.6.1
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## 1.13.0
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### Minor Changes
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Binary file
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Binary file
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Binary file
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Binary file
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package/package.json
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{
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"name": "@platforma-open/milaboratories.top-antibodies.workflow",
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"version": "1.13.
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"version": "1.13.2",
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"type": "module",
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"description": "Block Workflow",
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "^5.
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"@platforma-sdk/workflow-tengo": "^5.6.3",
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"@platforma-open/milaboratories.software-anarci": "^0.0.3",
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"@platforma-open/milaboratories.top-antibodies.sample-clonotypes": "1.6.1",
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"@platforma-open/milaboratories.top-antibodies.spectratype": "1.6.0",
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"@platforma-open/milaboratories.top-antibodies.umap": "1.1.4",
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"@platforma-open/milaboratories.top-antibodies.assembling-fasta": "1.1.0",
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"@platforma-open/milaboratories.top-antibodies.sample-clonotypes": "1.6.0",
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"@platforma-open/milaboratories.top-antibodies.anarci-kabat": "1.1.0"
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},
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"devDependencies": {
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"@platforma-sdk/tengo-builder": "^2.3.
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"@platforma-sdk/test": "^1.
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"@platforma-sdk/tengo-builder": "^2.3.13",
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"@platforma-sdk/test": "^1.46.0",
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"vitest": "^2.1.8"
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},
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"scripts": {
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cmd = cmd.saveFile("assembling.fasta").
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printErrStreamToStdout().
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saveStdoutContent().
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cache(24 * 60 * 60 * 1000).
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run()
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}
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anarciBuilder = anarciBuilder.
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printErrStreamToStdout().
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saveStdoutContent().
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cache(24 * 60 * 60 * 1000).
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run()
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arg("--out_tsv").arg("kabat.tsv").
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saveFile("kabat.tsv").
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printErrStreamToStdout().
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saveStdoutContent().
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cache(24 * 60 * 60 * 1000).
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run()
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arg("--filter-map").arg(string(json.encode(filterMap))).
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saveFile("filteredClonotypes.csv").
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printErrStreamToStdout().
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saveStdoutContent().
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cache(24 * 60 * 60 * 1000).
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run()
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arg("--out").arg("sampledClonotypes_top.csv").
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saveFile("sampledClonotypes_top.csv").
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printErrStreamToStdout().
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saveStdoutContent().
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cache(24 * 60 * 60 * 1000).
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run()
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package/src/prerun.tpl.tengo
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addedCols = true
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// Store reference value and filter type associated to this column
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filterMap["Filter_" + string(i)] = filter.filter
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filterMap["Filter_" + string(i)]["valueType"] = columns.getSpec(filter.value.column).valueType
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// If column does not have main anchor axis we have to include theirs
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colsSpec := columns.getSpec(filter.value.column)
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saveFile("spectratype.tsv").
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saveFile("vj_usage.tsv").
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printErrStreamToStdout().
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saveStdoutContent().
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cache(24 * 60 * 60 * 1000).
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run()
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