@platforma-open/milaboratories.top-antibodies.workflow 1.12.0 → 1.13.0

package/.turbo/turbo-build.log

@@ -1,6 +1,6 @@
  WARN  Issue while reading "/home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.top-antibodies.workflow@1.12.0 build /home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/workflow
+> @platforma-open/milaboratories.top-antibodies.workflow@1.13.0 build /home/runner/work/antibody-tcr-lead-selection/antibody-tcr-lead-selection/workflow
 > rm -rf dist && pl-tengo check && pl-tengo build
 
 Processing "src/assembling-fasta.tpl.tengo"...

package/CHANGELOG.md

@@ -1,5 +1,17 @@
 # @platforma-open/milaboratories.top-antibodies.workflow
 
+## 1.13.0
+
+### Minor Changes
+
+- 3825a42: Fix errors related to numeric properties that apply only to a subset of clonotypes and to multiple clustering blocks upstream
+
+### Patch Changes
+
+- Updated dependencies [3825a42]
+  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.6.0
+  - @platforma-open/milaboratories.top-antibodies.spectratype@1.6.0
+
 ## 1.12.0
 
 ### Minor Changes

package/package.json

@@ -1,20 +1,20 @@
 {
   "name": "@platforma-open/milaboratories.top-antibodies.workflow",
-  "version": "1.12.0",
+  "version": "1.13.0",
   "type": "module",
   "description": "Block Workflow",
   "dependencies": {
-    "@platforma-sdk/workflow-tengo": "^5.5.1",
+    "@platforma-sdk/workflow-tengo": "^5.5.5",
     "@platforma-open/milaboratories.software-anarci": "^0.0.3",
-    "@platforma-open/milaboratories.top-antibodies.sample-clonotypes": "1.5.0",
-    "@platforma-open/milaboratories.top-antibodies.spectratype": "1.5.0",
+    "@platforma-open/milaboratories.top-antibodies.spectratype": "1.6.0",
     "@platforma-open/milaboratories.top-antibodies.umap": "1.1.4",
     "@platforma-open/milaboratories.top-antibodies.assembling-fasta": "1.1.0",
+    "@platforma-open/milaboratories.top-antibodies.sample-clonotypes": "1.6.0",
     "@platforma-open/milaboratories.top-antibodies.anarci-kabat": "1.1.0"
   },
   "devDependencies": {
     "@platforma-sdk/tengo-builder": "^2.3.3",
-    "@platforma-sdk/test": "^1.45.1",
+    "@platforma-sdk/test": "^1.45.6",
     "vitest": "^2.1.8"
   },
   "scripts": {

package/src/prerun.tpl.tengo

@@ -127,7 +127,7 @@ wf.body(func(args) {
         ////////// Clonotype Filtering //////////
         // Build clonotype table
         cloneTable := pframes.csvFileBuilder() 
-        cloneTable.setAxisHeader(datasetSpec.axesSpec[1].name, "clonotypeKey")
+        cloneTable.setAxisHeader(datasetSpec.axesSpec[1], "clonotypeKey")
 
         // Add Filters to table
         addedAxes := []
@@ -150,7 +150,7 @@ wf.body(func(args) {
                     if !slices.hasElement(axesNames, datasetSpec.axesSpec[1].name) {
                         for na, ax in colsSpec.axesSpec {
                             if ax.name != datasetSpec.axesSpec[1].name {
-                                cloneTable.setAxisHeader(ax.name, "cluster_" + string(i) + string(na))
+                                cloneTable.setAxisHeader(ax, "cluster_" + string(i) + string(na))
                                 addedAxes = append(addedAxes, ax.name)
                             }
                         }
@@ -176,7 +176,7 @@ wf.body(func(args) {
                     if !slices.hasElement(axesNames, datasetSpec.axesSpec[1].name) {
                         for na, ax in colsSpec.axesSpec {
                             if ax.name != datasetSpec.axesSpec[1].name && !slices.hasElement(addedAxes, ax.name) {
-                                cloneTable.setAxisHeader(ax.name, "cluster_" + string(i) + string(na))
+                                cloneTable.setAxisHeader(ax, "cluster_" + string(i) + string(na))
                             }
                         }
                     }	
@@ -200,7 +200,7 @@ wf.body(func(args) {
                 if !slices.hasElement(axesNames, datasetSpec.axesSpec[1].name) {
                     for na, ax in colsSpec.axesSpec {
                         if ax.name != datasetSpec.axesSpec[1].name {
-                            cloneTable.setAxisHeader(ax.name, "cluster_" + string(i) + string(na))
+                            cloneTable.setAxisHeader(ax, "cluster_" + string(i) + string(na))
                         }
                     }
                 }	
@@ -213,11 +213,11 @@ wf.body(func(args) {
             for i, col in columns.getColumns("linkers") {
                 if datasetSpec.axesSpec[1].name == col.spec.axesSpec[1].name {
                     cloneTable.add(col, {header: "linker." + string(i)})
-                    cloneTable.setAxisHeader(col.spec.axesSpec[0].name, "cluster_" + string(i))
+                    cloneTable.setAxisHeader(col.spec.axesSpec[0], "cluster_" + string(i))
                     linkerAxisSpec["cluster_" + string(i)] = col.spec.axesSpec[0]
                 } else if datasetSpec.axesSpec[1].name == col.spec.axesSpec[0].name {
                     cloneTable.add(col, {header: "linker." + string(i)})
-                    cloneTable.setAxisHeader(col.spec.axesSpec[1].name, "cluster_" + string(i))
+                    cloneTable.setAxisHeader(col.spec.axesSpec[1], "cluster_" + string(i))
                     linkerAxisSpec["cluster_" + string(i)] = col.spec.axesSpec[1]
                 }
                 addedCols = true
@@ -232,7 +232,7 @@ wf.body(func(args) {
                 // Add the cluster axis header
                 for axisIdx, axis in col.spec.axesSpec {
                     if axis.name != datasetSpec.axesSpec[1].name {
-                        cloneTable.setAxisHeader(axis.name, "clusterAxis_" + string(i) + "_" + string(axisIdx))
+                        cloneTable.setAxisHeader(axis, "clusterAxis_" + string(i) + "_" + string(axisIdx))
                     }
                 }
             }