@platforma-open/milaboratories.tcrdisco-enrichment.workflow 1.1.0 → 1.1.1
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- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +8 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/tcr-ab-pairs.plj.gz +0 -0
- package/dist/tengo/tpl/tcr-analysis.plj.gz +0 -0
- package/package.json +5 -5
- package/src/main.tpl.tengo +4 -0
- package/src/tcr-analysis.tpl.tengo +5 -3
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/tcr-disco/tcr-disco/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.tcrdisco-enrichment.workflow@1.1.
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> @platforma-open/milaboratories.tcrdisco-enrichment.workflow@1.1.1 build /home/runner/work/tcr-disco/tcr-disco/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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info: Skipping unknown file type: wf.test.ts
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package/CHANGELOG.md
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# @platforma-open/milaboratories.tcrdisco-enrichment.workflow
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## 1.1.1
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### Patch Changes
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- c4d0ead: Allow empty inputs
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- Updated dependencies [c4d0ead]
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- @platforma-open/milaboratories.run-tcrdisco-enrichment.software@1.1.1
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## 1.1.0
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### Minor Changes
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Binary file
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Binary file
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Binary file
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package/package.json
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{
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"name": "@platforma-open/milaboratories.tcrdisco-enrichment.workflow",
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"version": "1.1.
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"version": "1.1.1",
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"type": "module",
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"description": "Block Workflow",
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "^5.
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"@platforma-open/milaboratories.run-tcrdisco-enrichment.software": "1.1.
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"@platforma-sdk/workflow-tengo": "^5.8.1",
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"@platforma-open/milaboratories.run-tcrdisco-enrichment.software": "1.1.1"
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},
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"devDependencies": {
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"@platforma-sdk/tengo-builder": "^2.
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"@platforma-sdk/test": "^1.
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"@platforma-sdk/tengo-builder": "^2.4.13",
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"@platforma-sdk/test": "^1.53.4",
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"vitest": "~2.1.9"
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},
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"scripts": {
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package/src/main.tpl.tengo
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@@ -402,6 +402,7 @@ wf.body(func(args) {
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clonotypeToSubsetBeta := tcrAnalysis.output("clonotypeToSubsetBeta")
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robustEnrichmentPFAlpha_clonotype := tcrAnalysis.output("robustEnrichmentPFAlpha_clonotype")
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robustEnrichmentPFBeta_clonotype := tcrAnalysis.output("robustEnrichmentPFBeta_clonotype")
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reportContent := tcrAnalysis.output("reportContent")
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////////////////// Spec preparation ////////////////
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topDegPframeBuilderAlpha := pframes.pFrameBuilder()
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}
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}
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// Report file indicating empty inputs or too much filtering
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outputs.reportContent = reportContent
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return {
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outputs: outputs,
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exports: {
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self.defineOutputs("topTableFileAlpha","topTableFileBeta","daFileAlpha",
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"daFileBeta","contrastMap","mainAlphaFrequenciesTsv","mainBetaFrequenciesTsv",
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"clonotypeToSubsetAlpha","clonotypeToSubsetBeta",
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"robustEnrichmentPFAlpha_clonotype","robustEnrichmentPFBeta_clonotype")
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"robustEnrichmentPFAlpha_clonotype","robustEnrichmentPFBeta_clonotype","reportContent")
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self.body(func(inputs) {
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@@ -126,7 +126,8 @@ self.body(func(inputs) {
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saveFile("DA_alpha.csv").
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saveFile("topTable_alpha.csv").
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saveFile("DA_beta.csv").
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saveFile("topTable_beta.csv")
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saveFile("topTable_beta.csv").
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saveFileContent("report.txt")
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for numerator in inputs.numerators {
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numerator = string(numerator)
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clonotypeToSubsetAlpha: clonotypeToSubsetAlpha,
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clonotypeToSubsetBeta: clonotypeToSubsetBeta,
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robustEnrichmentPFAlpha_clonotype: robustEnrichmentPFAlpha_clonotype,
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robustEnrichmentPFBeta_clonotype: robustEnrichmentPFBeta_clonotype
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robustEnrichmentPFBeta_clonotype: robustEnrichmentPFBeta_clonotype,
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reportContent: diffExec.getFileContent("report.txt")
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}
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})
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