@platforma-open/milaboratories.software-mixcr 4.7.0-112-develop

package/dist/tengo/software/main.sw.json

@@ -0,0 +1 @@
+{"name":"@platforma-open/milaboratories.software-mixcr:main","binary":{"type":"java","registry":"milaboratories","package":"milaboratories/mixcr/4.7.0-112-develop.tgz","cmd":["java","-jar","{pkg}/mixcr.jar"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-java-corretto:21.0.2.13.1","type":"java","registry":"platforma-open","package":"platforma-open/milaboratories.runenv-java-corretto/21.0.2.13.1/21.0.2.13.1-{os}-{arch}.tgz","binDir":"bin"}}}

package/package.json

@@ -0,0 +1,47 @@
+{
+  "name": "@platforma-open/milaboratories.software-mixcr",
+  "version": "4.7.0-112-develop",
+  "description": "MiXCR software dependency for Platforma Backend",
+  "scripts": {
+    "build": "true",
+    "pkg:build": "pl-pkg build packages",
+    "pkg:sign": "pl-pkg sign packages --sign-command='[\"gcloud-kms-sign\", \"{pkg}\", \"{pkg}.sig\"]'",
+    "pkg:publish": "pl-pkg publish packages",
+    "pkg:release": "npm run pkg:build && npm run pkg:sign && npm run pkg:publish",
+    "descriptor:build": "pl-pkg build descriptors",
+    "descriptor:publish": "pl-pkg publish descriptors",
+    "descriptor:release": "npm run descriptor:build && npm run descriptor:publish",
+    "postinstall": "node ./scripts/unpack-ci.js",
+    "prepublishOnly": "npm run pkg:release && npm run descriptor:build"
+  },
+  "block-software": {
+    "entrypoints": {
+      "main": {
+        "binary": {
+          "artifact": {
+            "registry": "milaboratories",
+            "name": "milaboratories/mixcr",
+            "type": "java",
+            "environment": "@platforma-open/milaboratories.runenv-java-corretto:21.0.2.13.1",
+            "root": "./dld/mixcr/"
+          },
+          "cmd": [
+            "java",
+            "-jar",
+            "{pkg}/mixcr.jar"
+          ]
+        }
+      }
+    }
+  },
+  "files": [
+    "dist/",
+    "scripts/unpack-ci.js"
+  ],
+  "license": "UNLICENSED",
+  "devDependencies": {
+    "@platforma-sdk/package-builder": "^2.9.2",
+    "@platforma-open/milaboratories.runenv-java-corretto": "^1.0.2",
+    "unzipper": "^0.12.3"
+  }
+}

package/scripts/unpack-ci.js

@@ -0,0 +1,70 @@
+#!/usr/bin/env node
+
+const fs = require("fs");
+const path = require("path");
+
+const scriptDir = __dirname;
+const packageRoot = path.resolve(scriptDir, "../");
+const dstRoot = path.join(packageRoot, "dld");
+const dstDataDir = path.join(dstRoot, "mixcr");
+
+function log(message) {
+    console.log(message);
+}
+
+if (!process.env.CI) {
+    process.exit(0);
+}
+
+const ARCHIVE_PATH = process.env.ARCHIVE_PATH;
+if (!ARCHIVE_PATH) {
+    log(
+        "To unpack existing archive after installation, provide 'ARCHIVE_PATH'" +
+        "environment variable with path to the mixcr archive before running 'npm ci' or 'npm install'"
+    );
+    process.exit(0)
+}
+
+function isDir(target) {
+    const stats = fs.statSync(target);
+    return stats.isDirectory();
+}
+
+function findZipArchive(archivePath) {
+    if (!isDir(archivePath)) {
+        return archivePath
+    }
+
+    const files = fs.readdirSync(archivePath, { recursive: false })
+    const zipFiles = files.filter((name) => name.endsWith(".zip"))
+
+    if (zipFiles.length === 0) {
+        log(`No zip archive found in '${archivePath}'`);
+        return "";
+    } else if (zipFiles.length > 1) {
+        log("More than one zip archive found. Please specify which one to use.");
+        return "";
+    } else {
+        return path.join(archivePath, zipFiles[0]);
+    }
+}
+
+const archivePath = findZipArchive(ARCHIVE_PATH);
+if (!archivePath) {
+    process.exit(1);
+}
+
+log(`Zip archive found at '${archivePath}'`);
+
+if (fs.existsSync(dstDataDir)) {
+    log(`Removing old data dir: ${dstDataDir}`);
+    fs.rmSync(dstDataDir, { recursive: true, force: true });
+}
+log(`Creating clean data dir: ${dstDataDir}`);
+fs.mkdirSync(dstDataDir, { recursive: true });
+
+const unzipper = require("unzipper");
+
+fs.createReadStream(archivePath)
+    .pipe(unzipper.Extract({ path: dstDataDir }))
+    .on("close", () => log(`Extraction complete to '${dstDataDir}'`));