@platforma-open/milaboratories.sequence-properties.model 1.2.2 → 1.2.4

package/dist/index.cjs

@@ -27,38 +27,7 @@ const platforma = _platforma_sdk_model.BlockModelV3.create(require_dataModel.blo
 	if (ctx.data.inputAnchor === void 0) return void 0;
 	const ownCols = ctx.outputs?.resolve("propertiesPf")?.getPColumns();
 	if (ownCols === void 0) return void 0;
-	const info = ctx.outputs?.resolve("info")?.getDataAsJson();
-	if (info === void 0) return void 0;
-	const tier = info.coverageTier;
-	const sources = [new _platforma_sdk_model.ArrayColumnProvider(ctx.resultPool.selectColumns((spec) => !spec.annotations?.[_platforma_sdk_model.Annotation.Trace]?.includes("milaboratories.sequence-properties"))), new _platforma_sdk_model.ArrayColumnProvider(ownCols)];
-	return (0, _platforma_sdk_model.createPlDataTableV3)(ctx, {
-		tableState: ctx.data.tableState,
-		columns: {
-			sources,
-			anchors: { main: ctx.data.inputAnchor },
-			selector: { mode: "enrichment" }
-		},
-		displayOptions: { visibility: [{
-			match: (spec) => {
-				if (spec.domain?.["pl7.app/vdj/scClonotypeChain/index"] === "secondary") return false;
-				if (spec.domain?.["pl7.app/alphabet"] !== "aminoacid") return false;
-				const isVdj = spec.name === "pl7.app/vdj/sequence";
-				const isUniversal = spec.name === "pl7.app/sequence";
-				if (!isVdj && !isUniversal) return false;
-				const feature = isVdj ? spec.domain?.["pl7.app/vdj/feature"] : spec.domain?.["pl7.app/feature"];
-				if (tier === "peptide") return isUniversal && feature === "peptide";
-				const chain = spec.domain?.["pl7.app/vdj/scClonotypeChain"];
-				if (chain !== void 0 && chain !== "A") return false;
-				if (tier === "full_chain") return feature === "VDJRegion" || feature === "VDJRegionInFrame";
-				if (tier === "cdr3_only" || tier === "partial") return feature === "CDR3";
-				return false;
-			},
-			visibility: "default"
-		}, {
-			match: (spec) => !spec.annotations?.[_platforma_sdk_model.Annotation.Trace]?.includes("milaboratories.sequence-properties") && spec.annotations?.["pl7.app/isLinkerColumn"] !== "true" && spec.annotations?.["pl7.app/isOutput"] !== "true",
-			visibility: "optional"
-		}] }
-	});
+	return (0, _platforma_sdk_model.createPlDataTableV2)(ctx, ownCols.filter((c) => c.spec.axesSpec.length === 1), ctx.data.tableState);
 }).outputWithStatus("propertiesPfHandle", (ctx) => {
 	const allPCols = ctx.outputs?.resolve("propertiesPf")?.getPColumns();
 	if (allPCols === void 0) return void 0;

package/dist/index.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"index.cjs","names":["BlockModelV3","blockDataModel","ArrayColumnProvider","Annotation"],"sources":["../src/index.ts"],"sourcesContent":["import type {\n  ColumnSource,\n  InferOutputsType,\n  PColumnIdAndSpec,\n  PFrameHandle,\n} from \"@platforma-sdk/model\";\nimport {\n  Annotation,\n  ArrayColumnProvider,\n  BlockModelV3,\n  createPFrameForGraphs,\n  createPlDataTableV3,\n} from \"@platforma-sdk/model\";\nimport { blockDataModel } from \"./dataModel\";\nimport type { BlockArgs, WorkflowInfo } from \"./types\";\n\nexport type * from \"@milaboratories/helpers\";\nexport { blockDataModel } from \"./dataModel\";\nexport type { BlockArgs, BlockData, WorkflowInfo, WorkflowMode, WorkflowReceptor } from \"./types\";\n\nconst inputAnchorSpecs = [\n  // Peptide mode — universal naming\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/variantKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  // Antibody/TCR — legacy MiXCR bulk (cloneId per spec; clonotypeKey per current MiXCR output)\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/cloneId\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/clonotypeKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  // Antibody/TCR — legacy MiXCR single-cell\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/scClonotypeKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n];\n\nexport const platforma = BlockModelV3.create(blockDataModel)\n  .args<BlockArgs>((data) => {\n    if (data.inputAnchor === undefined) {\n      throw new Error(\"Select an input dataset\");\n    }\n    return {\n      inputAnchor: data.inputAnchor,\n    };\n  })\n  .output(\"inputOptions\", (ctx) => ctx.resultPool.getOptions(inputAnchorSpecs))\n  .output(\"inputSpec\", (ctx) =>\n    ctx.data.inputAnchor ? ctx.resultPool.getPColumnSpecByRef(ctx.data.inputAnchor) : undefined,\n  )\n  .output(\"info\", (ctx) => ctx.outputs?.resolve(\"info\")?.getDataAsJson<WorkflowInfo>())\n  .output(\"isRunning\", (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n  .output(\"processingLog\", (ctx) => ctx.outputs?.resolve(\"processingLog\")?.getLogHandle())\n  .outputWithStatus(\"propertiesTable\", (ctx) => {\n    if (ctx.data.inputAnchor === undefined) return undefined;\n    const ownCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (ownCols === undefined) return undefined;\n    // `coverageTier` is set in workflow/main.tpl.tengo and surfaced via the\n    // `info` JSON resource. Allowed values are defined in types.ts::WorkflowInfo.\n    // Gate on `info` so the table renders consistently with the chosen aa\n    // column rather than briefly without it while `info` is still resolving.\n    const info = ctx.outputs?.resolve(\"info\")?.getDataAsJson<WorkflowInfo>();\n    if (info === undefined) return undefined;\n    const tier = info.coverageTier;\n\n    // Build sources explicitly: upstream cols from the result pool minus\n    // anything traced back to this block, plus this block's own cols from\n    // `propertiesPf`. The workflow also publishes `exports.properties` —\n    // a blockId-stamped score-only variant for downstream consumers like\n    // Lead Selection — into the result pool. Filtering by trace excludes\n    // it here so score cols don't duplicate the propertiesPf variant.\n    const upstreamCols = ctx.resultPool.selectColumns(\n      (spec) =>\n        !spec.annotations?.[Annotation.Trace]?.includes(\"milaboratories.sequence-properties\"),\n    );\n    const sources: ColumnSource[] = [\n      new ArrayColumnProvider(upstreamCols),\n      new ArrayColumnProvider(ownCols),\n    ];\n\n    return createPlDataTableV3(ctx, {\n      tableState: ctx.data.tableState,\n      columns: {\n        sources,\n        anchors: { main: ctx.data.inputAnchor },\n        selector: { mode: \"enrichment\" },\n      },\n      // Default-visible: this block's columns + a single source amino-acid\n      // sequence column matching the analysed coverage tier. Reviewer asked\n      // for one sequence next to the properties — full-chain VDJRegion when\n      // available (it contains the CDR3); CDR3 alone when that is all the\n      // input has; peptide for peptide mode. Chain A (heavy / alpha / gamma)\n      // only — chain B stays available via the column picker. Other upstream\n      // cols → optional. This block's cols fall through unmatched and keep\n      // their workflow-time `pl7.app/table/visibility` annotation.\n      displayOptions: {\n        visibility: [\n          {\n            match: (spec) => {\n              if (spec.domain?.[\"pl7.app/vdj/scClonotypeChain/index\"] === \"secondary\") {\n                return false;\n              }\n              if (spec.domain?.[\"pl7.app/alphabet\"] !== \"aminoacid\") return false;\n\n              const isVdj = spec.name === \"pl7.app/vdj/sequence\";\n              const isUniversal = spec.name === \"pl7.app/sequence\";\n              if (!isVdj && !isUniversal) return false;\n\n              const feature = isVdj\n                ? spec.domain?.[\"pl7.app/vdj/feature\"]\n                : spec.domain?.[\"pl7.app/feature\"];\n\n              if (tier === \"peptide\") {\n                return isUniversal && feature === \"peptide\";\n              }\n\n              const chain = spec.domain?.[\"pl7.app/vdj/scClonotypeChain\"];\n              if (chain !== undefined && chain !== \"A\") return false;\n\n              if (tier === \"full_chain\") {\n                return feature === \"VDJRegion\" || feature === \"VDJRegionInFrame\";\n              }\n              if (tier === \"cdr3_only\" || tier === \"partial\") {\n                return feature === \"CDR3\";\n              }\n              return false;\n            },\n            visibility: \"default\",\n          },\n          {\n            match: (spec) =>\n              !spec.annotations?.[Annotation.Trace]?.includes(\n                \"milaboratories.sequence-properties\",\n              ) &&\n              spec.annotations?.[\"pl7.app/isLinkerColumn\"] !== \"true\" &&\n              spec.annotations?.[\"pl7.app/isOutput\"] !== \"true\",\n            visibility: \"optional\",\n          },\n        ],\n      },\n    });\n  })\n  .outputWithStatus(\"propertiesPfHandle\", (ctx): PFrameHandle | undefined => {\n    const allPCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (allPCols === undefined) return undefined;\n    // Drop the AA fraction column from the pframe entirely. Two-axis\n    // (variantKey × aminoAcid), at 50k peptides ~1M cells — enough to trip\n    // graph-maker's cell-count guard on its own. The picker already excludes\n    // it via `isNumericScalar` (axesSpec.length === 1), so the data was\n    // pure overhead.\n    const pCols = allPCols.filter((c) => c.spec.name !== \"pl7.app/aaFraction\");\n    // Use `ctx.createPFrame` instead of `createPFrameForGraphs`. The latter\n    // walks the result pool and pulls in this block's `exports.properties`\n    // — a `trace.inject`-stamped re-emission of every column already in\n    // `propertiesPf`, published for Lead Selection — so axis dropdowns\n    // show e.g. \"Net Charge (pH7) / IG\" twice. Same workaround chosen by\n    // cdr3-spectratype, batch-correction, cell-type-annotation, and\n    // dimensionality-reduction.\n    //\n    // Pull single-axis metadata anchored to the input dataset's two axes\n    // (idx 0 = sample, idx 1 = entity key) so sample groups / patient IDs /\n    // peptide abundance and similar cols remain available for grouping and\n    // filtering. Drop self-trace to keep our own exports out.\n    const inputAnchor = ctx.data.inputAnchor;\n    const upstreamMeta =\n      inputAnchor !== undefined\n        ? (\n            ctx.resultPool.getAnchoredPColumns({ main: inputAnchor }, [\n              { axes: [{ anchor: \"main\", idx: 0 }] },\n              { axes: [{ anchor: \"main\", idx: 1 }] },\n            ]) ?? []\n          ).filter(\n            (c) =>\n              !c.spec.annotations?.[Annotation.Trace]?.includes(\n                \"milaboratories.sequence-properties\",\n              ),\n          )\n        : [];\n    return createPFrameForGraphs(ctx, [...pCols, ...upstreamMeta]);\n  })\n  .output(\"propertiesPfCols\", (ctx): PColumnIdAndSpec[] | undefined => {\n    const pCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (pCols === undefined) return undefined;\n    return pCols.map((c) => ({ columnId: c.id, spec: c.spec }) satisfies PColumnIdAndSpec);\n  })\n  .title(() => \"Sequence Properties\")\n  .subtitle((ctx) => ctx.data.defaultBlockLabel ?? \"\")\n  .sections(() => [\n    { type: \"link\", href: \"/\", label: \"Main\" },\n    { type: \"link\", href: \"/scatter\", label: \"Property Relationships\" },\n    { type: \"link\", href: \"/histogram\", label: \"Property Distribution\" },\n  ])\n  .done();\n\nexport type BlockOutputs = InferOutputsType<typeof platforma>;\n"],"mappings":";;;;AAoBA,MAAM,mBAAmB;CAEvB;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,sBAAsB,CAAC;EACpE,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CAED;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,uBAAuB,CAAC;EACrE,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CACD;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,4BAA4B,CAAC;EAC1E,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CAED;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,8BAA8B,CAAC;EAC5E,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CACF;AAED,MAAa,YAAYA,qBAAAA,aAAa,OAAOC,kBAAAA,eAAe,CACzD,MAAiB,SAAS;AACzB,KAAI,KAAK,gBAAgB,KAAA,EACvB,OAAM,IAAI,MAAM,0BAA0B;AAE5C,QAAO,EACL,aAAa,KAAK,aACnB;EACD,CACD,OAAO,iBAAiB,QAAQ,IAAI,WAAW,WAAW,iBAAiB,CAAC,CAC5E,OAAO,cAAc,QACpB,IAAI,KAAK,cAAc,IAAI,WAAW,oBAAoB,IAAI,KAAK,YAAY,GAAG,KAAA,EACnF,CACA,OAAO,SAAS,QAAQ,IAAI,SAAS,QAAQ,OAAO,EAAE,eAA6B,CAAC,CACpF,OAAO,cAAc,QAAQ,IAAI,SAAS,mBAAmB,KAAK,MAAM,CACxE,OAAO,kBAAkB,QAAQ,IAAI,SAAS,QAAQ,gBAAgB,EAAE,cAAc,CAAC,CACvF,iBAAiB,oBAAoB,QAAQ;AAC5C,KAAI,IAAI,KAAK,gBAAgB,KAAA,EAAW,QAAO,KAAA;CAC/C,MAAM,UAAU,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACnE,KAAI,YAAY,KAAA,EAAW,QAAO,KAAA;CAKlC,MAAM,OAAO,IAAI,SAAS,QAAQ,OAAO,EAAE,eAA6B;AACxE,KAAI,SAAS,KAAA,EAAW,QAAO,KAAA;CAC/B,MAAM,OAAO,KAAK;CAYlB,MAAM,UAA0B,CAC9B,IAAIC,qBAAAA,oBALe,IAAI,WAAW,eACjC,SACC,CAAC,KAAK,cAAcC,qBAAAA,WAAW,QAAQ,SAAS,qCAAqC,CACxF,CAEsC,EACrC,IAAID,qBAAAA,oBAAoB,QAAQ,CACjC;AAED,SAAA,GAAA,qBAAA,qBAA2B,KAAK;EAC9B,YAAY,IAAI,KAAK;EACrB,SAAS;GACP;GACA,SAAS,EAAE,MAAM,IAAI,KAAK,aAAa;GACvC,UAAU,EAAE,MAAM,cAAc;GACjC;EASD,gBAAgB,EACd,YAAY,CACV;GACE,QAAQ,SAAS;AACf,QAAI,KAAK,SAAS,0CAA0C,YAC1D,QAAO;AAET,QAAI,KAAK,SAAS,wBAAwB,YAAa,QAAO;IAE9D,MAAM,QAAQ,KAAK,SAAS;IAC5B,MAAM,cAAc,KAAK,SAAS;AAClC,QAAI,CAAC,SAAS,CAAC,YAAa,QAAO;IAEnC,MAAM,UAAU,QACZ,KAAK,SAAS,yBACd,KAAK,SAAS;AAElB,QAAI,SAAS,UACX,QAAO,eAAe,YAAY;IAGpC,MAAM,QAAQ,KAAK,SAAS;AAC5B,QAAI,UAAU,KAAA,KAAa,UAAU,IAAK,QAAO;AAEjD,QAAI,SAAS,aACX,QAAO,YAAY,eAAe,YAAY;AAEhD,QAAI,SAAS,eAAe,SAAS,UACnC,QAAO,YAAY;AAErB,WAAO;;GAET,YAAY;GACb,EACD;GACE,QAAQ,SACN,CAAC,KAAK,cAAcC,qBAAAA,WAAW,QAAQ,SACrC,qCACD,IACD,KAAK,cAAc,8BAA8B,UACjD,KAAK,cAAc,wBAAwB;GAC7C,YAAY;GACb,CACF,EACF;EACF,CAAC;EACF,CACD,iBAAiB,uBAAuB,QAAkC;CACzE,MAAM,WAAW,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACpE,KAAI,aAAa,KAAA,EAAW,QAAO,KAAA;CAMnC,MAAM,QAAQ,SAAS,QAAQ,MAAM,EAAE,KAAK,SAAS,qBAAqB;CAa1E,MAAM,cAAc,IAAI,KAAK;CAC7B,MAAM,eACJ,gBAAgB,KAAA,KAEV,IAAI,WAAW,oBAAoB,EAAE,MAAM,aAAa,EAAE,CACxD,EAAE,MAAM,CAAC;EAAE,QAAQ;EAAQ,KAAK;EAAG,CAAC,EAAE,EACtC,EAAE,MAAM,CAAC;EAAE,QAAQ;EAAQ,KAAK;EAAG,CAAC,EAAE,CACvC,CAAC,IAAI,EAAE,EACR,QACC,MACC,CAAC,EAAE,KAAK,cAAcA,qBAAAA,WAAW,QAAQ,SACvC,qCACD,CACJ,GACD,EAAE;AACR,SAAA,GAAA,qBAAA,uBAA6B,KAAK,CAAC,GAAG,OAAO,GAAG,aAAa,CAAC;EAC9D,CACD,OAAO,qBAAqB,QAAwC;CACnE,MAAM,QAAQ,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACjE,KAAI,UAAU,KAAA,EAAW,QAAO,KAAA;AAChC,QAAO,MAAM,KAAK,OAAO;EAAE,UAAU,EAAE;EAAI,MAAM,EAAE;EAAM,EAA6B;EACtF,CACD,YAAY,sBAAsB,CAClC,UAAU,QAAQ,IAAI,KAAK,qBAAqB,GAAG,CACnD,eAAe;CACd;EAAE,MAAM;EAAQ,MAAM;EAAK,OAAO;EAAQ;CAC1C;EAAE,MAAM;EAAQ,MAAM;EAAY,OAAO;EAA0B;CACnE;EAAE,MAAM;EAAQ,MAAM;EAAc,OAAO;EAAyB;CACrE,CAAC,CACD,MAAM"}
+{"version":3,"file":"index.cjs","names":["BlockModelV3","blockDataModel","Annotation"],"sources":["../src/index.ts"],"sourcesContent":["import type { InferOutputsType, PColumnIdAndSpec, PFrameHandle } from \"@platforma-sdk/model\";\nimport {\n  Annotation,\n  BlockModelV3,\n  createPFrameForGraphs,\n  createPlDataTableV2,\n} from \"@platforma-sdk/model\";\nimport { blockDataModel } from \"./dataModel\";\nimport type { BlockArgs, WorkflowInfo } from \"./types\";\n\nexport type * from \"@milaboratories/helpers\";\nexport { blockDataModel } from \"./dataModel\";\nexport type { BlockArgs, BlockData, WorkflowInfo, WorkflowMode, WorkflowReceptor } from \"./types\";\n\nconst inputAnchorSpecs = [\n  // Peptide mode — universal naming\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/variantKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  // Antibody/TCR — legacy MiXCR bulk (cloneId per spec; clonotypeKey per current MiXCR output)\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/cloneId\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/clonotypeKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  // Antibody/TCR — legacy MiXCR single-cell\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/scClonotypeKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n];\n\nexport const platforma = BlockModelV3.create(blockDataModel)\n  .args<BlockArgs>((data) => {\n    if (data.inputAnchor === undefined) {\n      throw new Error(\"Select an input dataset\");\n    }\n    return {\n      inputAnchor: data.inputAnchor,\n    };\n  })\n  .output(\"inputOptions\", (ctx) => ctx.resultPool.getOptions(inputAnchorSpecs))\n  .output(\"inputSpec\", (ctx) =>\n    ctx.data.inputAnchor ? ctx.resultPool.getPColumnSpecByRef(ctx.data.inputAnchor) : undefined,\n  )\n  .output(\"info\", (ctx) => ctx.outputs?.resolve(\"info\")?.getDataAsJson<WorkflowInfo>())\n  .output(\"isRunning\", (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n  .output(\"processingLog\", (ctx) => ctx.outputs?.resolve(\"processingLog\")?.getLogHandle())\n  .outputWithStatus(\"propertiesTable\", (ctx) => {\n    if (ctx.data.inputAnchor === undefined) return undefined;\n    const ownCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (ownCols === undefined) return undefined;\n    // Temporary downgrade to V2 with a fixed, propertiesPf-only column list.\n    // V3 default-visibility rules and the column picker are not yet stable for\n    // the multi-source layout this block needs (upstream sequence column +\n    // own scalar properties). Once V3 supports it natively, rewire across\n    // blocks. aaFraction is 2-axis (variantKey × aminoAcid) — already filtered\n    // from the graph pFrame; filtered here too so it doesn't widen the table.\n    const tableCols = ownCols.filter((c) => c.spec.axesSpec.length === 1);\n    return createPlDataTableV2(ctx, tableCols, ctx.data.tableState);\n  })\n  .outputWithStatus(\"propertiesPfHandle\", (ctx): PFrameHandle | undefined => {\n    const allPCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (allPCols === undefined) return undefined;\n    // Drop the AA fraction column from the pframe entirely. Two-axis\n    // (variantKey × aminoAcid), at 50k peptides ~1M cells — enough to trip\n    // graph-maker's cell-count guard on its own. The picker already excludes\n    // it via `isNumericScalar` (axesSpec.length === 1), so the data was\n    // pure overhead.\n    const pCols = allPCols.filter((c) => c.spec.name !== \"pl7.app/aaFraction\");\n    // Use `ctx.createPFrame` instead of `createPFrameForGraphs`. The latter\n    // walks the result pool and pulls in this block's `exports.properties`\n    // — a `trace.inject`-stamped re-emission of every column already in\n    // `propertiesPf`, published for Lead Selection — so axis dropdowns\n    // show e.g. \"Net Charge (pH7) / IG\" twice. Same workaround chosen by\n    // cdr3-spectratype, batch-correction, cell-type-annotation, and\n    // dimensionality-reduction.\n    //\n    // Pull single-axis metadata anchored to the input dataset's two axes\n    // (idx 0 = sample, idx 1 = entity key) so sample groups / patient IDs /\n    // peptide abundance and similar cols remain available for grouping and\n    // filtering. Drop self-trace to keep our own exports out.\n    const inputAnchor = ctx.data.inputAnchor;\n    const upstreamMeta =\n      inputAnchor !== undefined\n        ? (\n            ctx.resultPool.getAnchoredPColumns({ main: inputAnchor }, [\n              { axes: [{ anchor: \"main\", idx: 0 }] },\n              { axes: [{ anchor: \"main\", idx: 1 }] },\n            ]) ?? []\n          ).filter(\n            (c) =>\n              !c.spec.annotations?.[Annotation.Trace]?.includes(\n                \"milaboratories.sequence-properties\",\n              ),\n          )\n        : [];\n    return createPFrameForGraphs(ctx, [...pCols, ...upstreamMeta]);\n  })\n  .output(\"propertiesPfCols\", (ctx): PColumnIdAndSpec[] | undefined => {\n    const pCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (pCols === undefined) return undefined;\n    return pCols.map((c) => ({ columnId: c.id, spec: c.spec }) satisfies PColumnIdAndSpec);\n  })\n  .title(() => \"Sequence Properties\")\n  .subtitle((ctx) => ctx.data.defaultBlockLabel ?? \"\")\n  .sections(() => [\n    { type: \"link\", href: \"/\", label: \"Main\" },\n    { type: \"link\", href: \"/scatter\", label: \"Property Relationships\" },\n    { type: \"link\", href: \"/histogram\", label: \"Property Distribution\" },\n  ])\n  .done();\n\nexport type BlockOutputs = InferOutputsType<typeof platforma>;\n"],"mappings":";;;;AAcA,MAAM,mBAAmB;CAEvB;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,sBAAsB,CAAC;EACpE,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CAED;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,uBAAuB,CAAC;EACrE,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CACD;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,4BAA4B,CAAC;EAC1E,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CAED;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,8BAA8B,CAAC;EAC5E,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CACF;AAED,MAAa,YAAYA,qBAAAA,aAAa,OAAOC,kBAAAA,eAAe,CACzD,MAAiB,SAAS;AACzB,KAAI,KAAK,gBAAgB,KAAA,EACvB,OAAM,IAAI,MAAM,0BAA0B;AAE5C,QAAO,EACL,aAAa,KAAK,aACnB;EACD,CACD,OAAO,iBAAiB,QAAQ,IAAI,WAAW,WAAW,iBAAiB,CAAC,CAC5E,OAAO,cAAc,QACpB,IAAI,KAAK,cAAc,IAAI,WAAW,oBAAoB,IAAI,KAAK,YAAY,GAAG,KAAA,EACnF,CACA,OAAO,SAAS,QAAQ,IAAI,SAAS,QAAQ,OAAO,EAAE,eAA6B,CAAC,CACpF,OAAO,cAAc,QAAQ,IAAI,SAAS,mBAAmB,KAAK,MAAM,CACxE,OAAO,kBAAkB,QAAQ,IAAI,SAAS,QAAQ,gBAAgB,EAAE,cAAc,CAAC,CACvF,iBAAiB,oBAAoB,QAAQ;AAC5C,KAAI,IAAI,KAAK,gBAAgB,KAAA,EAAW,QAAO,KAAA;CAC/C,MAAM,UAAU,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACnE,KAAI,YAAY,KAAA,EAAW,QAAO,KAAA;AAQlC,SAAA,GAAA,qBAAA,qBAA2B,KADT,QAAQ,QAAQ,MAAM,EAAE,KAAK,SAAS,WAAW,EAAE,EAC1B,IAAI,KAAK,WAAW;EAC/D,CACD,iBAAiB,uBAAuB,QAAkC;CACzE,MAAM,WAAW,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACpE,KAAI,aAAa,KAAA,EAAW,QAAO,KAAA;CAMnC,MAAM,QAAQ,SAAS,QAAQ,MAAM,EAAE,KAAK,SAAS,qBAAqB;CAa1E,MAAM,cAAc,IAAI,KAAK;CAC7B,MAAM,eACJ,gBAAgB,KAAA,KAEV,IAAI,WAAW,oBAAoB,EAAE,MAAM,aAAa,EAAE,CACxD,EAAE,MAAM,CAAC;EAAE,QAAQ;EAAQ,KAAK;EAAG,CAAC,EAAE,EACtC,EAAE,MAAM,CAAC;EAAE,QAAQ;EAAQ,KAAK;EAAG,CAAC,EAAE,CACvC,CAAC,IAAI,EAAE,EACR,QACC,MACC,CAAC,EAAE,KAAK,cAAcC,qBAAAA,WAAW,QAAQ,SACvC,qCACD,CACJ,GACD,EAAE;AACR,SAAA,GAAA,qBAAA,uBAA6B,KAAK,CAAC,GAAG,OAAO,GAAG,aAAa,CAAC;EAC9D,CACD,OAAO,qBAAqB,QAAwC;CACnE,MAAM,QAAQ,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACjE,KAAI,UAAU,KAAA,EAAW,QAAO,KAAA;AAChC,QAAO,MAAM,KAAK,OAAO;EAAE,UAAU,EAAE;EAAI,MAAM,EAAE;EAAM,EAA6B;EACtF,CACD,YAAY,sBAAsB,CAClC,UAAU,QAAQ,IAAI,KAAK,qBAAqB,GAAG,CACnD,eAAe;CACd;EAAE,MAAM;EAAQ,MAAM;EAAK,OAAO;EAAQ;CAC1C;EAAE,MAAM;EAAQ,MAAM;EAAY,OAAO;EAA0B;CACnE;EAAE,MAAM;EAAQ,MAAM;EAAc,OAAO;EAAyB;CACrE,CAAC,CACD,MAAM"}

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","names":[],"sources":["../src/index.ts"],"mappings":";;;;;;;;cA0Ca,SAAA,EAAS,uBAAA,CAAA,iBAAA,yBAAA,WAAA,CA2Jb,SAAA,EA3Ja,SAAA,0BAAA,uBAAA;gBAAA,uBAAA,CAAA,kBAAA;IAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yCAAA,uBAAA,CAAA,sBAAA;AAAA,KA6JV,YAAA,GAAe,gBAAA,QAAwB,SAAA"}
+{"version":3,"file":"index.d.ts","names":[],"sources":["../src/index.ts"],"mappings":";;;;;;;;cAoCa,SAAA,EAAS,uBAAA,CAAA,iBAAA,yBAAA,WAAA,CA+Eb,SAAA,EA/Ea,SAAA,0BAAA,uBAAA;gBAAA,uBAAA,CAAA,kBAAA;IAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yCAAA,uBAAA,CAAA,sBAAA;AAAA,KAiFV,YAAA,GAAe,gBAAA,QAAwB,SAAA"}

package/dist/index.js

@@ -1,5 +1,5 @@
 import { blockDataModel } from "./dataModel.js";
-import { Annotation, ArrayColumnProvider, BlockModelV3, createPFrameForGraphs, createPlDataTableV3 } from "@platforma-sdk/model";
+import { Annotation, BlockModelV3, createPFrameForGraphs, createPlDataTableV2 } from "@platforma-sdk/model";
 //#region src/index.ts
 const inputAnchorSpecs = [
 	{
@@ -26,38 +26,7 @@ const platforma = BlockModelV3.create(blockDataModel).args((data) => {
 	if (ctx.data.inputAnchor === void 0) return void 0;
 	const ownCols = ctx.outputs?.resolve("propertiesPf")?.getPColumns();
 	if (ownCols === void 0) return void 0;
-	const info = ctx.outputs?.resolve("info")?.getDataAsJson();
-	if (info === void 0) return void 0;
-	const tier = info.coverageTier;
-	const sources = [new ArrayColumnProvider(ctx.resultPool.selectColumns((spec) => !spec.annotations?.[Annotation.Trace]?.includes("milaboratories.sequence-properties"))), new ArrayColumnProvider(ownCols)];
-	return createPlDataTableV3(ctx, {
-		tableState: ctx.data.tableState,
-		columns: {
-			sources,
-			anchors: { main: ctx.data.inputAnchor },
-			selector: { mode: "enrichment" }
-		},
-		displayOptions: { visibility: [{
-			match: (spec) => {
-				if (spec.domain?.["pl7.app/vdj/scClonotypeChain/index"] === "secondary") return false;
-				if (spec.domain?.["pl7.app/alphabet"] !== "aminoacid") return false;
-				const isVdj = spec.name === "pl7.app/vdj/sequence";
-				const isUniversal = spec.name === "pl7.app/sequence";
-				if (!isVdj && !isUniversal) return false;
-				const feature = isVdj ? spec.domain?.["pl7.app/vdj/feature"] : spec.domain?.["pl7.app/feature"];
-				if (tier === "peptide") return isUniversal && feature === "peptide";
-				const chain = spec.domain?.["pl7.app/vdj/scClonotypeChain"];
-				if (chain !== void 0 && chain !== "A") return false;
-				if (tier === "full_chain") return feature === "VDJRegion" || feature === "VDJRegionInFrame";
-				if (tier === "cdr3_only" || tier === "partial") return feature === "CDR3";
-				return false;
-			},
-			visibility: "default"
-		}, {
-			match: (spec) => !spec.annotations?.[Annotation.Trace]?.includes("milaboratories.sequence-properties") && spec.annotations?.["pl7.app/isLinkerColumn"] !== "true" && spec.annotations?.["pl7.app/isOutput"] !== "true",
-			visibility: "optional"
-		}] }
-	});
+	return createPlDataTableV2(ctx, ownCols.filter((c) => c.spec.axesSpec.length === 1), ctx.data.tableState);
 }).outputWithStatus("propertiesPfHandle", (ctx) => {
 	const allPCols = ctx.outputs?.resolve("propertiesPf")?.getPColumns();
 	if (allPCols === void 0) return void 0;

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../src/index.ts"],"sourcesContent":["import type {\n  ColumnSource,\n  InferOutputsType,\n  PColumnIdAndSpec,\n  PFrameHandle,\n} from \"@platforma-sdk/model\";\nimport {\n  Annotation,\n  ArrayColumnProvider,\n  BlockModelV3,\n  createPFrameForGraphs,\n  createPlDataTableV3,\n} from \"@platforma-sdk/model\";\nimport { blockDataModel } from \"./dataModel\";\nimport type { BlockArgs, WorkflowInfo } from \"./types\";\n\nexport type * from \"@milaboratories/helpers\";\nexport { blockDataModel } from \"./dataModel\";\nexport type { BlockArgs, BlockData, WorkflowInfo, WorkflowMode, WorkflowReceptor } from \"./types\";\n\nconst inputAnchorSpecs = [\n  // Peptide mode — universal naming\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/variantKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  // Antibody/TCR — legacy MiXCR bulk (cloneId per spec; clonotypeKey per current MiXCR output)\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/cloneId\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/clonotypeKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  // Antibody/TCR — legacy MiXCR single-cell\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/scClonotypeKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n];\n\nexport const platforma = BlockModelV3.create(blockDataModel)\n  .args<BlockArgs>((data) => {\n    if (data.inputAnchor === undefined) {\n      throw new Error(\"Select an input dataset\");\n    }\n    return {\n      inputAnchor: data.inputAnchor,\n    };\n  })\n  .output(\"inputOptions\", (ctx) => ctx.resultPool.getOptions(inputAnchorSpecs))\n  .output(\"inputSpec\", (ctx) =>\n    ctx.data.inputAnchor ? ctx.resultPool.getPColumnSpecByRef(ctx.data.inputAnchor) : undefined,\n  )\n  .output(\"info\", (ctx) => ctx.outputs?.resolve(\"info\")?.getDataAsJson<WorkflowInfo>())\n  .output(\"isRunning\", (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n  .output(\"processingLog\", (ctx) => ctx.outputs?.resolve(\"processingLog\")?.getLogHandle())\n  .outputWithStatus(\"propertiesTable\", (ctx) => {\n    if (ctx.data.inputAnchor === undefined) return undefined;\n    const ownCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (ownCols === undefined) return undefined;\n    // `coverageTier` is set in workflow/main.tpl.tengo and surfaced via the\n    // `info` JSON resource. Allowed values are defined in types.ts::WorkflowInfo.\n    // Gate on `info` so the table renders consistently with the chosen aa\n    // column rather than briefly without it while `info` is still resolving.\n    const info = ctx.outputs?.resolve(\"info\")?.getDataAsJson<WorkflowInfo>();\n    if (info === undefined) return undefined;\n    const tier = info.coverageTier;\n\n    // Build sources explicitly: upstream cols from the result pool minus\n    // anything traced back to this block, plus this block's own cols from\n    // `propertiesPf`. The workflow also publishes `exports.properties` —\n    // a blockId-stamped score-only variant for downstream consumers like\n    // Lead Selection — into the result pool. Filtering by trace excludes\n    // it here so score cols don't duplicate the propertiesPf variant.\n    const upstreamCols = ctx.resultPool.selectColumns(\n      (spec) =>\n        !spec.annotations?.[Annotation.Trace]?.includes(\"milaboratories.sequence-properties\"),\n    );\n    const sources: ColumnSource[] = [\n      new ArrayColumnProvider(upstreamCols),\n      new ArrayColumnProvider(ownCols),\n    ];\n\n    return createPlDataTableV3(ctx, {\n      tableState: ctx.data.tableState,\n      columns: {\n        sources,\n        anchors: { main: ctx.data.inputAnchor },\n        selector: { mode: \"enrichment\" },\n      },\n      // Default-visible: this block's columns + a single source amino-acid\n      // sequence column matching the analysed coverage tier. Reviewer asked\n      // for one sequence next to the properties — full-chain VDJRegion when\n      // available (it contains the CDR3); CDR3 alone when that is all the\n      // input has; peptide for peptide mode. Chain A (heavy / alpha / gamma)\n      // only — chain B stays available via the column picker. Other upstream\n      // cols → optional. This block's cols fall through unmatched and keep\n      // their workflow-time `pl7.app/table/visibility` annotation.\n      displayOptions: {\n        visibility: [\n          {\n            match: (spec) => {\n              if (spec.domain?.[\"pl7.app/vdj/scClonotypeChain/index\"] === \"secondary\") {\n                return false;\n              }\n              if (spec.domain?.[\"pl7.app/alphabet\"] !== \"aminoacid\") return false;\n\n              const isVdj = spec.name === \"pl7.app/vdj/sequence\";\n              const isUniversal = spec.name === \"pl7.app/sequence\";\n              if (!isVdj && !isUniversal) return false;\n\n              const feature = isVdj\n                ? spec.domain?.[\"pl7.app/vdj/feature\"]\n                : spec.domain?.[\"pl7.app/feature\"];\n\n              if (tier === \"peptide\") {\n                return isUniversal && feature === \"peptide\";\n              }\n\n              const chain = spec.domain?.[\"pl7.app/vdj/scClonotypeChain\"];\n              if (chain !== undefined && chain !== \"A\") return false;\n\n              if (tier === \"full_chain\") {\n                return feature === \"VDJRegion\" || feature === \"VDJRegionInFrame\";\n              }\n              if (tier === \"cdr3_only\" || tier === \"partial\") {\n                return feature === \"CDR3\";\n              }\n              return false;\n            },\n            visibility: \"default\",\n          },\n          {\n            match: (spec) =>\n              !spec.annotations?.[Annotation.Trace]?.includes(\n                \"milaboratories.sequence-properties\",\n              ) &&\n              spec.annotations?.[\"pl7.app/isLinkerColumn\"] !== \"true\" &&\n              spec.annotations?.[\"pl7.app/isOutput\"] !== \"true\",\n            visibility: \"optional\",\n          },\n        ],\n      },\n    });\n  })\n  .outputWithStatus(\"propertiesPfHandle\", (ctx): PFrameHandle | undefined => {\n    const allPCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (allPCols === undefined) return undefined;\n    // Drop the AA fraction column from the pframe entirely. Two-axis\n    // (variantKey × aminoAcid), at 50k peptides ~1M cells — enough to trip\n    // graph-maker's cell-count guard on its own. The picker already excludes\n    // it via `isNumericScalar` (axesSpec.length === 1), so the data was\n    // pure overhead.\n    const pCols = allPCols.filter((c) => c.spec.name !== \"pl7.app/aaFraction\");\n    // Use `ctx.createPFrame` instead of `createPFrameForGraphs`. The latter\n    // walks the result pool and pulls in this block's `exports.properties`\n    // — a `trace.inject`-stamped re-emission of every column already in\n    // `propertiesPf`, published for Lead Selection — so axis dropdowns\n    // show e.g. \"Net Charge (pH7) / IG\" twice. Same workaround chosen by\n    // cdr3-spectratype, batch-correction, cell-type-annotation, and\n    // dimensionality-reduction.\n    //\n    // Pull single-axis metadata anchored to the input dataset's two axes\n    // (idx 0 = sample, idx 1 = entity key) so sample groups / patient IDs /\n    // peptide abundance and similar cols remain available for grouping and\n    // filtering. Drop self-trace to keep our own exports out.\n    const inputAnchor = ctx.data.inputAnchor;\n    const upstreamMeta =\n      inputAnchor !== undefined\n        ? (\n            ctx.resultPool.getAnchoredPColumns({ main: inputAnchor }, [\n              { axes: [{ anchor: \"main\", idx: 0 }] },\n              { axes: [{ anchor: \"main\", idx: 1 }] },\n            ]) ?? []\n          ).filter(\n            (c) =>\n              !c.spec.annotations?.[Annotation.Trace]?.includes(\n                \"milaboratories.sequence-properties\",\n              ),\n          )\n        : [];\n    return createPFrameForGraphs(ctx, [...pCols, ...upstreamMeta]);\n  })\n  .output(\"propertiesPfCols\", (ctx): PColumnIdAndSpec[] | undefined => {\n    const pCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (pCols === undefined) return undefined;\n    return pCols.map((c) => ({ columnId: c.id, spec: c.spec }) satisfies PColumnIdAndSpec);\n  })\n  .title(() => \"Sequence Properties\")\n  .subtitle((ctx) => ctx.data.defaultBlockLabel ?? \"\")\n  .sections(() => [\n    { type: \"link\", href: \"/\", label: \"Main\" },\n    { type: \"link\", href: \"/scatter\", label: \"Property Relationships\" },\n    { type: \"link\", href: \"/histogram\", label: \"Property Distribution\" },\n  ])\n  .done();\n\nexport type BlockOutputs = InferOutputsType<typeof platforma>;\n"],"mappings":";;;AAoBA,MAAM,mBAAmB;CAEvB;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,sBAAsB,CAAC;EACpE,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CAED;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,uBAAuB,CAAC;EACrE,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CACD;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,4BAA4B,CAAC;EAC1E,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CAED;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,8BAA8B,CAAC;EAC5E,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CACF;AAED,MAAa,YAAY,aAAa,OAAO,eAAe,CACzD,MAAiB,SAAS;AACzB,KAAI,KAAK,gBAAgB,KAAA,EACvB,OAAM,IAAI,MAAM,0BAA0B;AAE5C,QAAO,EACL,aAAa,KAAK,aACnB;EACD,CACD,OAAO,iBAAiB,QAAQ,IAAI,WAAW,WAAW,iBAAiB,CAAC,CAC5E,OAAO,cAAc,QACpB,IAAI,KAAK,cAAc,IAAI,WAAW,oBAAoB,IAAI,KAAK,YAAY,GAAG,KAAA,EACnF,CACA,OAAO,SAAS,QAAQ,IAAI,SAAS,QAAQ,OAAO,EAAE,eAA6B,CAAC,CACpF,OAAO,cAAc,QAAQ,IAAI,SAAS,mBAAmB,KAAK,MAAM,CACxE,OAAO,kBAAkB,QAAQ,IAAI,SAAS,QAAQ,gBAAgB,EAAE,cAAc,CAAC,CACvF,iBAAiB,oBAAoB,QAAQ;AAC5C,KAAI,IAAI,KAAK,gBAAgB,KAAA,EAAW,QAAO,KAAA;CAC/C,MAAM,UAAU,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACnE,KAAI,YAAY,KAAA,EAAW,QAAO,KAAA;CAKlC,MAAM,OAAO,IAAI,SAAS,QAAQ,OAAO,EAAE,eAA6B;AACxE,KAAI,SAAS,KAAA,EAAW,QAAO,KAAA;CAC/B,MAAM,OAAO,KAAK;CAYlB,MAAM,UAA0B,CAC9B,IAAI,oBALe,IAAI,WAAW,eACjC,SACC,CAAC,KAAK,cAAc,WAAW,QAAQ,SAAS,qCAAqC,CACxF,CAEsC,EACrC,IAAI,oBAAoB,QAAQ,CACjC;AAED,QAAO,oBAAoB,KAAK;EAC9B,YAAY,IAAI,KAAK;EACrB,SAAS;GACP;GACA,SAAS,EAAE,MAAM,IAAI,KAAK,aAAa;GACvC,UAAU,EAAE,MAAM,cAAc;GACjC;EASD,gBAAgB,EACd,YAAY,CACV;GACE,QAAQ,SAAS;AACf,QAAI,KAAK,SAAS,0CAA0C,YAC1D,QAAO;AAET,QAAI,KAAK,SAAS,wBAAwB,YAAa,QAAO;IAE9D,MAAM,QAAQ,KAAK,SAAS;IAC5B,MAAM,cAAc,KAAK,SAAS;AAClC,QAAI,CAAC,SAAS,CAAC,YAAa,QAAO;IAEnC,MAAM,UAAU,QACZ,KAAK,SAAS,yBACd,KAAK,SAAS;AAElB,QAAI,SAAS,UACX,QAAO,eAAe,YAAY;IAGpC,MAAM,QAAQ,KAAK,SAAS;AAC5B,QAAI,UAAU,KAAA,KAAa,UAAU,IAAK,QAAO;AAEjD,QAAI,SAAS,aACX,QAAO,YAAY,eAAe,YAAY;AAEhD,QAAI,SAAS,eAAe,SAAS,UACnC,QAAO,YAAY;AAErB,WAAO;;GAET,YAAY;GACb,EACD;GACE,QAAQ,SACN,CAAC,KAAK,cAAc,WAAW,QAAQ,SACrC,qCACD,IACD,KAAK,cAAc,8BAA8B,UACjD,KAAK,cAAc,wBAAwB;GAC7C,YAAY;GACb,CACF,EACF;EACF,CAAC;EACF,CACD,iBAAiB,uBAAuB,QAAkC;CACzE,MAAM,WAAW,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACpE,KAAI,aAAa,KAAA,EAAW,QAAO,KAAA;CAMnC,MAAM,QAAQ,SAAS,QAAQ,MAAM,EAAE,KAAK,SAAS,qBAAqB;CAa1E,MAAM,cAAc,IAAI,KAAK;CAC7B,MAAM,eACJ,gBAAgB,KAAA,KAEV,IAAI,WAAW,oBAAoB,EAAE,MAAM,aAAa,EAAE,CACxD,EAAE,MAAM,CAAC;EAAE,QAAQ;EAAQ,KAAK;EAAG,CAAC,EAAE,EACtC,EAAE,MAAM,CAAC;EAAE,QAAQ;EAAQ,KAAK;EAAG,CAAC,EAAE,CACvC,CAAC,IAAI,EAAE,EACR,QACC,MACC,CAAC,EAAE,KAAK,cAAc,WAAW,QAAQ,SACvC,qCACD,CACJ,GACD,EAAE;AACR,QAAO,sBAAsB,KAAK,CAAC,GAAG,OAAO,GAAG,aAAa,CAAC;EAC9D,CACD,OAAO,qBAAqB,QAAwC;CACnE,MAAM,QAAQ,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACjE,KAAI,UAAU,KAAA,EAAW,QAAO,KAAA;AAChC,QAAO,MAAM,KAAK,OAAO;EAAE,UAAU,EAAE;EAAI,MAAM,EAAE;EAAM,EAA6B;EACtF,CACD,YAAY,sBAAsB,CAClC,UAAU,QAAQ,IAAI,KAAK,qBAAqB,GAAG,CACnD,eAAe;CACd;EAAE,MAAM;EAAQ,MAAM;EAAK,OAAO;EAAQ;CAC1C;EAAE,MAAM;EAAQ,MAAM;EAAY,OAAO;EAA0B;CACnE;EAAE,MAAM;EAAQ,MAAM;EAAc,OAAO;EAAyB;CACrE,CAAC,CACD,MAAM"}
+{"version":3,"file":"index.js","names":[],"sources":["../src/index.ts"],"sourcesContent":["import type { InferOutputsType, PColumnIdAndSpec, PFrameHandle } from \"@platforma-sdk/model\";\nimport {\n  Annotation,\n  BlockModelV3,\n  createPFrameForGraphs,\n  createPlDataTableV2,\n} from \"@platforma-sdk/model\";\nimport { blockDataModel } from \"./dataModel\";\nimport type { BlockArgs, WorkflowInfo } from \"./types\";\n\nexport type * from \"@milaboratories/helpers\";\nexport { blockDataModel } from \"./dataModel\";\nexport type { BlockArgs, BlockData, WorkflowInfo, WorkflowMode, WorkflowReceptor } from \"./types\";\n\nconst inputAnchorSpecs = [\n  // Peptide mode — universal naming\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/variantKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  // Antibody/TCR — legacy MiXCR bulk (cloneId per spec; clonotypeKey per current MiXCR output)\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/cloneId\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/clonotypeKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n  // Antibody/TCR — legacy MiXCR single-cell\n  {\n    axes: [{ name: \"pl7.app/sampleId\" }, { name: \"pl7.app/vdj/scClonotypeKey\" }],\n    annotations: { \"pl7.app/isAnchor\": \"true\" },\n  },\n];\n\nexport const platforma = BlockModelV3.create(blockDataModel)\n  .args<BlockArgs>((data) => {\n    if (data.inputAnchor === undefined) {\n      throw new Error(\"Select an input dataset\");\n    }\n    return {\n      inputAnchor: data.inputAnchor,\n    };\n  })\n  .output(\"inputOptions\", (ctx) => ctx.resultPool.getOptions(inputAnchorSpecs))\n  .output(\"inputSpec\", (ctx) =>\n    ctx.data.inputAnchor ? ctx.resultPool.getPColumnSpecByRef(ctx.data.inputAnchor) : undefined,\n  )\n  .output(\"info\", (ctx) => ctx.outputs?.resolve(\"info\")?.getDataAsJson<WorkflowInfo>())\n  .output(\"isRunning\", (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n  .output(\"processingLog\", (ctx) => ctx.outputs?.resolve(\"processingLog\")?.getLogHandle())\n  .outputWithStatus(\"propertiesTable\", (ctx) => {\n    if (ctx.data.inputAnchor === undefined) return undefined;\n    const ownCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (ownCols === undefined) return undefined;\n    // Temporary downgrade to V2 with a fixed, propertiesPf-only column list.\n    // V3 default-visibility rules and the column picker are not yet stable for\n    // the multi-source layout this block needs (upstream sequence column +\n    // own scalar properties). Once V3 supports it natively, rewire across\n    // blocks. aaFraction is 2-axis (variantKey × aminoAcid) — already filtered\n    // from the graph pFrame; filtered here too so it doesn't widen the table.\n    const tableCols = ownCols.filter((c) => c.spec.axesSpec.length === 1);\n    return createPlDataTableV2(ctx, tableCols, ctx.data.tableState);\n  })\n  .outputWithStatus(\"propertiesPfHandle\", (ctx): PFrameHandle | undefined => {\n    const allPCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (allPCols === undefined) return undefined;\n    // Drop the AA fraction column from the pframe entirely. Two-axis\n    // (variantKey × aminoAcid), at 50k peptides ~1M cells — enough to trip\n    // graph-maker's cell-count guard on its own. The picker already excludes\n    // it via `isNumericScalar` (axesSpec.length === 1), so the data was\n    // pure overhead.\n    const pCols = allPCols.filter((c) => c.spec.name !== \"pl7.app/aaFraction\");\n    // Use `ctx.createPFrame` instead of `createPFrameForGraphs`. The latter\n    // walks the result pool and pulls in this block's `exports.properties`\n    // — a `trace.inject`-stamped re-emission of every column already in\n    // `propertiesPf`, published for Lead Selection — so axis dropdowns\n    // show e.g. \"Net Charge (pH7) / IG\" twice. Same workaround chosen by\n    // cdr3-spectratype, batch-correction, cell-type-annotation, and\n    // dimensionality-reduction.\n    //\n    // Pull single-axis metadata anchored to the input dataset's two axes\n    // (idx 0 = sample, idx 1 = entity key) so sample groups / patient IDs /\n    // peptide abundance and similar cols remain available for grouping and\n    // filtering. Drop self-trace to keep our own exports out.\n    const inputAnchor = ctx.data.inputAnchor;\n    const upstreamMeta =\n      inputAnchor !== undefined\n        ? (\n            ctx.resultPool.getAnchoredPColumns({ main: inputAnchor }, [\n              { axes: [{ anchor: \"main\", idx: 0 }] },\n              { axes: [{ anchor: \"main\", idx: 1 }] },\n            ]) ?? []\n          ).filter(\n            (c) =>\n              !c.spec.annotations?.[Annotation.Trace]?.includes(\n                \"milaboratories.sequence-properties\",\n              ),\n          )\n        : [];\n    return createPFrameForGraphs(ctx, [...pCols, ...upstreamMeta]);\n  })\n  .output(\"propertiesPfCols\", (ctx): PColumnIdAndSpec[] | undefined => {\n    const pCols = ctx.outputs?.resolve(\"propertiesPf\")?.getPColumns();\n    if (pCols === undefined) return undefined;\n    return pCols.map((c) => ({ columnId: c.id, spec: c.spec }) satisfies PColumnIdAndSpec);\n  })\n  .title(() => \"Sequence Properties\")\n  .subtitle((ctx) => ctx.data.defaultBlockLabel ?? \"\")\n  .sections(() => [\n    { type: \"link\", href: \"/\", label: \"Main\" },\n    { type: \"link\", href: \"/scatter\", label: \"Property Relationships\" },\n    { type: \"link\", href: \"/histogram\", label: \"Property Distribution\" },\n  ])\n  .done();\n\nexport type BlockOutputs = InferOutputsType<typeof platforma>;\n"],"mappings":";;;AAcA,MAAM,mBAAmB;CAEvB;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,sBAAsB,CAAC;EACpE,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CAED;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,uBAAuB,CAAC;EACrE,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CACD;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,4BAA4B,CAAC;EAC1E,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CAED;EACE,MAAM,CAAC,EAAE,MAAM,oBAAoB,EAAE,EAAE,MAAM,8BAA8B,CAAC;EAC5E,aAAa,EAAE,oBAAoB,QAAQ;EAC5C;CACF;AAED,MAAa,YAAY,aAAa,OAAO,eAAe,CACzD,MAAiB,SAAS;AACzB,KAAI,KAAK,gBAAgB,KAAA,EACvB,OAAM,IAAI,MAAM,0BAA0B;AAE5C,QAAO,EACL,aAAa,KAAK,aACnB;EACD,CACD,OAAO,iBAAiB,QAAQ,IAAI,WAAW,WAAW,iBAAiB,CAAC,CAC5E,OAAO,cAAc,QACpB,IAAI,KAAK,cAAc,IAAI,WAAW,oBAAoB,IAAI,KAAK,YAAY,GAAG,KAAA,EACnF,CACA,OAAO,SAAS,QAAQ,IAAI,SAAS,QAAQ,OAAO,EAAE,eAA6B,CAAC,CACpF,OAAO,cAAc,QAAQ,IAAI,SAAS,mBAAmB,KAAK,MAAM,CACxE,OAAO,kBAAkB,QAAQ,IAAI,SAAS,QAAQ,gBAAgB,EAAE,cAAc,CAAC,CACvF,iBAAiB,oBAAoB,QAAQ;AAC5C,KAAI,IAAI,KAAK,gBAAgB,KAAA,EAAW,QAAO,KAAA;CAC/C,MAAM,UAAU,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACnE,KAAI,YAAY,KAAA,EAAW,QAAO,KAAA;AAQlC,QAAO,oBAAoB,KADT,QAAQ,QAAQ,MAAM,EAAE,KAAK,SAAS,WAAW,EAAE,EAC1B,IAAI,KAAK,WAAW;EAC/D,CACD,iBAAiB,uBAAuB,QAAkC;CACzE,MAAM,WAAW,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACpE,KAAI,aAAa,KAAA,EAAW,QAAO,KAAA;CAMnC,MAAM,QAAQ,SAAS,QAAQ,MAAM,EAAE,KAAK,SAAS,qBAAqB;CAa1E,MAAM,cAAc,IAAI,KAAK;CAC7B,MAAM,eACJ,gBAAgB,KAAA,KAEV,IAAI,WAAW,oBAAoB,EAAE,MAAM,aAAa,EAAE,CACxD,EAAE,MAAM,CAAC;EAAE,QAAQ;EAAQ,KAAK;EAAG,CAAC,EAAE,EACtC,EAAE,MAAM,CAAC;EAAE,QAAQ;EAAQ,KAAK;EAAG,CAAC,EAAE,CACvC,CAAC,IAAI,EAAE,EACR,QACC,MACC,CAAC,EAAE,KAAK,cAAc,WAAW,QAAQ,SACvC,qCACD,CACJ,GACD,EAAE;AACR,QAAO,sBAAsB,KAAK,CAAC,GAAG,OAAO,GAAG,aAAa,CAAC;EAC9D,CACD,OAAO,qBAAqB,QAAwC;CACnE,MAAM,QAAQ,IAAI,SAAS,QAAQ,eAAe,EAAE,aAAa;AACjE,KAAI,UAAU,KAAA,EAAW,QAAO,KAAA;AAChC,QAAO,MAAM,KAAK,OAAO;EAAE,UAAU,EAAE;EAAI,MAAM,EAAE;EAAM,EAA6B;EACtF,CACD,YAAY,sBAAsB,CAClC,UAAU,QAAQ,IAAI,KAAK,qBAAqB,GAAG,CACnD,eAAe;CACd;EAAE,MAAM;EAAQ,MAAM;EAAK,OAAO;EAAQ;CAC1C;EAAE,MAAM;EAAQ,MAAM;EAAY,OAAO;EAA0B;CACnE;EAAE,MAAM;EAAQ,MAAM;EAAc,OAAO;EAAyB;CACrE,CAAC,CACD,MAAM"}