@platforma-open/milaboratories.sequence-properties.model 1.2.1 → 1.2.3

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.sequence-properties.model",
-  "version": "1.2.1",
+  "version": "1.2.3",
   "description": "Block model",
   "type": "module",
   "main": "dist/index.js",

package/src/index.ts

@@ -1,14 +1,9 @@
-import type {
-  ColumnSource,
-  InferOutputsType,
-  PColumnIdAndSpec,
-  PFrameHandle,
-} from "@platforma-sdk/model";
+import type { InferOutputsType, PColumnIdAndSpec, PFrameHandle } from "@platforma-sdk/model";
 import {
   Annotation,
-  ArrayColumnProvider,
   BlockModelV3,
-  createPlDataTableV3,
+  createPFrameForGraphs,
+  createPlDataTableV2,
 } from "@platforma-sdk/model";
 import { blockDataModel } from "./dataModel";
 import type { BlockArgs, WorkflowInfo } from "./types";
@@ -59,88 +54,14 @@ export const platforma = BlockModelV3.create(blockDataModel)
     if (ctx.data.inputAnchor === undefined) return undefined;
     const ownCols = ctx.outputs?.resolve("propertiesPf")?.getPColumns();
     if (ownCols === undefined) return undefined;
-    // `coverageTier` is set in workflow/main.tpl.tengo and surfaced via the
-    // `info` JSON resource. Allowed values are defined in types.ts::WorkflowInfo.
-    // Gate on `info` so the table renders consistently with the chosen aa
-    // column rather than briefly without it while `info` is still resolving.
-    const info = ctx.outputs?.resolve("info")?.getDataAsJson<WorkflowInfo>();
-    if (info === undefined) return undefined;
-    const tier = info.coverageTier;
-
-    // Build sources explicitly: upstream cols from the result pool minus
-    // anything traced back to this block, plus this block's own cols from
-    // `propertiesPf`. The workflow also publishes `exports.properties` —
-    // a blockId-stamped score-only variant for downstream consumers like
-    // Lead Selection — into the result pool. Filtering by trace excludes
-    // it here so score cols don't duplicate the propertiesPf variant.
-    const upstreamCols = ctx.resultPool.selectColumns(
-      (spec) =>
-        !spec.annotations?.[Annotation.Trace]?.includes("milaboratories.sequence-properties"),
-    );
-    const sources: ColumnSource[] = [
-      new ArrayColumnProvider(upstreamCols),
-      new ArrayColumnProvider(ownCols),
-    ];
-
-    return createPlDataTableV3(ctx, {
-      tableState: ctx.data.tableState,
-      columns: {
-        sources,
-        anchors: { main: ctx.data.inputAnchor },
-        selector: { mode: "enrichment" },
-      },
-      // Default-visible: this block's columns + a single source amino-acid
-      // sequence column matching the analysed coverage tier. Reviewer asked
-      // for one sequence next to the properties — full-chain VDJRegion when
-      // available (it contains the CDR3); CDR3 alone when that is all the
-      // input has; peptide for peptide mode. Chain A (heavy / alpha / gamma)
-      // only — chain B stays available via the column picker. Other upstream
-      // cols → optional. This block's cols fall through unmatched and keep
-      // their workflow-time `pl7.app/table/visibility` annotation.
-      displayOptions: {
-        visibility: [
-          {
-            match: (spec) => {
-              if (spec.domain?.["pl7.app/vdj/scClonotypeChain/index"] === "secondary") {
-                return false;
-              }
-              if (spec.domain?.["pl7.app/alphabet"] !== "aminoacid") return false;
-
-              const isVdj = spec.name === "pl7.app/vdj/sequence";
-              const isUniversal = spec.name === "pl7.app/sequence";
-              if (!isVdj && !isUniversal) return false;
-
-              const feature = isVdj
-                ? spec.domain?.["pl7.app/vdj/feature"]
-                : spec.domain?.["pl7.app/feature"];
-
-              if (tier === "peptide") {
-                return isUniversal && feature === "peptide";
-              }
-
-              const chain = spec.domain?.["pl7.app/vdj/scClonotypeChain"];
-              if (chain !== undefined && chain !== "A") return false;
-
-              if (tier === "full_chain") {
-                return feature === "VDJRegion" || feature === "VDJRegionInFrame";
-              }
-              if (tier === "cdr3_only" || tier === "partial") {
-                return feature === "CDR3";
-              }
-              return false;
-            },
-            visibility: "default",
-          },
-          {
-            match: (spec) =>
-              !spec.annotations?.[Annotation.Trace]?.includes(
-                "milaboratories.sequence-properties",
-              ) && spec.annotations?.["pl7.app/isLinkerColumn"] !== "true",
-            visibility: "optional",
-          },
-        ],
-      },
-    });
+    // Temporary downgrade to V2 with a fixed, propertiesPf-only column list.
+    // V3 default-visibility rules and the column picker are not yet stable for
+    // the multi-source layout this block needs (upstream sequence column +
+    // own scalar properties). Once V3 supports it natively, rewire across
+    // blocks. aaFraction is 2-axis (variantKey × aminoAcid) — already filtered
+    // from the graph pFrame; filtered here too so it doesn't widen the table.
+    const tableCols = ownCols.filter((c) => c.spec.axesSpec.length === 1);
+    return createPlDataTableV2(ctx, tableCols, ctx.data.tableState);
   })
   .outputWithStatus("propertiesPfHandle", (ctx): PFrameHandle | undefined => {
     const allPCols = ctx.outputs?.resolve("propertiesPf")?.getPColumns();
@@ -178,7 +99,7 @@ export const platforma = BlockModelV3.create(blockDataModel)
               ),
           )
         : [];
-    return ctx.createPFrame([...pCols, ...upstreamMeta]);
+    return createPFrameForGraphs(ctx, [...pCols, ...upstreamMeta]);
   })
   .output("propertiesPfCols", (ctx): PColumnIdAndSpec[] | undefined => {
     const pCols = ctx.outputs?.resolve("propertiesPf")?.getPColumns();