@platforma-open/milaboratories.sequence-properties.model 1.1.1 → 1.1.2

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.sequence-properties.model",
-  "version": "1.1.1",
+  "version": "1.1.2",
   "description": "Block model",
   "type": "module",
   "main": "dist/index.js",

package/src/index.ts

@@ -55,6 +55,13 @@ export const platforma = BlockModelV3.create(blockDataModel)
     if (ctx.data.inputAnchor === undefined) return undefined;
     const ownCols = ctx.outputs?.resolve("propertiesPf")?.getPColumns();
     if (ownCols === undefined) return undefined;
+    // `coverageTier` is set in workflow/main.tpl.tengo and surfaced via the
+    // `info` JSON resource. Allowed values are defined in types.ts::WorkflowInfo.
+    // Gate on `info` so the table renders consistently with the chosen aa
+    // column rather than briefly without it while `info` is still resolving.
+    const info = ctx.outputs?.resolve("info")?.getDataAsJson<WorkflowInfo>();
+    if (info === undefined) return undefined;
+    const tier = info.coverageTier;
 
     // Build sources explicitly: upstream cols from the result pool minus
     // anything traced back to this block, plus this block's own cols from
@@ -78,12 +85,48 @@ export const platforma = BlockModelV3.create(blockDataModel)
         anchors: { main: ctx.data.inputAnchor },
         selector: { mode: "enrichment" },
       },
-      // UX policy (not in spec): default-show only this block's columns;
-      // demote upstream cols to optional to keep the table uncluttered.
-      // This block's cols fall through unmatched and keep the visibility
-      // stamped at workflow-time (`pl7.app/table/visibility`).
+      // Default-visible: this block's columns + a single source amino-acid
+      // sequence column matching the analysed coverage tier. Reviewer asked
+      // for one sequence next to the properties — full-chain VDJRegion when
+      // available (it contains the CDR3); CDR3 alone when that is all the
+      // input has; peptide for peptide mode. Chain A (heavy / alpha / gamma)
+      // only — chain B stays available via the column picker. Other upstream
+      // cols → optional. This block's cols fall through unmatched and keep
+      // their workflow-time `pl7.app/table/visibility` annotation.
       displayOptions: {
         visibility: [
+          {
+            match: (spec) => {
+              if (spec.domain?.["pl7.app/vdj/scClonotypeChain/index"] === "secondary") {
+                return false;
+              }
+              if (spec.domain?.["pl7.app/alphabet"] !== "aminoacid") return false;
+
+              const isVdj = spec.name === "pl7.app/vdj/sequence";
+              const isUniversal = spec.name === "pl7.app/sequence";
+              if (!isVdj && !isUniversal) return false;
+
+              const feature = isVdj
+                ? spec.domain?.["pl7.app/vdj/feature"]
+                : spec.domain?.["pl7.app/feature"];
+
+              if (tier === "peptide") {
+                return isUniversal && feature === "peptide";
+              }
+
+              const chain = spec.domain?.["pl7.app/vdj/scClonotypeChain"];
+              if (chain !== undefined && chain !== "A") return false;
+
+              if (tier === "full_chain") {
+                return feature === "VDJRegion" || feature === "VDJRegionInFrame";
+              }
+              if (tier === "cdr3_only" || tier === "partial") {
+                return feature === "CDR3";
+              }
+              return false;
+            },
+            visibility: "default",
+          },
           {
             match: (spec) =>
               !spec.annotations?.[Annotation.Trace]?.includes(