@platforma-open/milaboratories.samples-and-data.workflow 2.3.0 → 2.3.1

package/dist/tengo/lib/ds-bulk-count-matrix.lib.tengo

@@ -37,6 +37,10 @@ getSamples := func(dataset, importFile) {
     return result
 }
 
+createGroupAxis := func(groupIdAxis, _) {
+    return copy(groupIdAxis)
+}
+
 createDataset := func(blockId, sampleIdAxis, groupIdAxis, dataset, importFile) {
     
     extension :=  dataset.content.xsvType + (dataset.content.gzipped ? ".gz" : "")
@@ -64,5 +68,6 @@ createDataset := func(blockId, sampleIdAxis, groupIdAxis, dataset, importFile) {
 export {
     isGrouped: true,
     getSamples: getSamples,
+    createGroupAxis: createGroupAxis,
     createDataset: createDataset
 }

package/dist/tengo/lib/ds-multiplexed-fastq.lib.tengo

@@ -5,6 +5,10 @@ json := import("json")
 smart := import("@platforma-sdk/workflow-tengo:smart")
 util := import("@platforma-open/milaboratories.samples-and-data.workflow:util")
 
+createGroupAxis := func(groupIdAxis, _) {
+    return copy(groupIdAxis)
+}
+
 createDataset := func(blockId, sampleIdAxis, groupIdAxis, dataset, importFile) {
 	extension :=  dataset.content.gzipped ? "fastq.gz" : "fastq"
 	
@@ -50,6 +54,7 @@ getSamples := func(dataset, importFile) {
 
 export {
     isGrouped: true,
+    createGroupAxis: createGroupAxis,
     createDataset: createDataset,
 	getSamples: getSamples
 }

package/dist/tengo/lib/ds-multisample-h5ad.lib.tengo

@@ -18,10 +18,7 @@ getColumns := func(fImport, importFile) {
 
 getSamples := func(dataset, importFile) {
     result := {}
-    sampleColumnName := dataset.content.sampleColumnName
-    if !sampleColumnName {
-        sampleColumnName = "sample"
-    }
+    sampleColumnName := util.getSampleColumnName(dataset)
     for groupId, importHandle in dataset.content.data {
         if !importHandle {
             ll.panic("File handle not set for group %v", groupId)
@@ -36,6 +33,13 @@ getSamples := func(dataset, importFile) {
     return result
 }
 
+createGroupAxis := func(groupIdAxis, dataset) {
+    sampleColumnName := util.getSampleColumnName(dataset)
+    result := copy(groupIdAxis)
+    result.annotations["pl7.app/sampleColumnName"] = sampleColumnName
+    return result
+}
+
 createDataset := func(blockId, sampleIdAxis, groupIdAxis, dataset, importFile) {
         
     extension := "h5ad"
@@ -64,6 +68,7 @@ export {
     isGrouped: true,
     getColumns: getColumns,
     getSamples: getSamples,
+    createGroupAxis: createGroupAxis,
     createDataset: createDataset
 }
 

package/dist/tengo/lib/ds-multisample-seurat.lib.tengo

@@ -18,10 +18,7 @@ getColumns := func(fImport, importFile) {
 
 getSamples := func(dataset, importFile) {
     result := {}
-    sampleColumnName := dataset.content.sampleColumnName
-    if !sampleColumnName {
-        sampleColumnName = "sample"
-    }
+    sampleColumnName := util.getSampleColumnName(dataset)
     for groupId, importHandle in dataset.content.data {
         if !importHandle {
             ll.panic("File handle not set for group %v", groupId)
@@ -36,6 +33,13 @@ getSamples := func(dataset, importFile) {
     return result
 }
 
+createGroupAxis := func(groupIdAxis, dataset) {
+    sampleColumnName := util.getSampleColumnName(dataset)
+    result := copy(groupIdAxis)
+    result.annotations["pl7.app/sampleColumnName"] = sampleColumnName
+    return result
+}
+
 createDataset := func(blockId, sampleIdAxis, groupIdAxis, dataset, importFile) {
     
     extension := "rds"
@@ -64,6 +68,7 @@ export {
     isGrouped: true,
     getColumns: getColumns,
     getSamples: getSamples,
+    createGroupAxis: createGroupAxis,
     createDataset: createDataset
 }
 

package/dist/tengo/lib/util.lib.tengo

@@ -72,9 +72,18 @@ sampleGroupsLinkerColumn := func(blockId, dataset, sampleIdAxis, groupIdAxis) {
     }
 }
 
+getSampleColumnName := func(dataset) {
+    sampleColumnName := dataset.content.sampleColumnName
+    if !sampleColumnName {
+        return "sample"
+    }
+    return sampleColumnName
+}
+
 
 export {
     createJsonPColumnData: createJsonPColumnData,
     datasetColumnSpecBase: datasetColumnSpecBase,
-    sampleGroupsLinkerColumn: sampleGroupsLinkerColumn
+    sampleGroupsLinkerColumn: sampleGroupsLinkerColumn,
+    getSampleColumnName: getSampleColumnName
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.samples-and-data.workflow",
-  "version": "2.3.0",
+  "version": "2.3.1",
   "type": "module",
   "files": [
     "./dist/**/*"