@platforma-open/milaboratories.run-diff-clonotype-abundance-deseq2-r.software 1.14.0 → 1.14.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1704 -1631
- package/CHANGELOG.md +10 -0
- package/dist/artifacts/main/archive.json +1 -1
- package/dist/artifacts/main/docker_x64.json +1 -1
- package/dist/artifacts/prev-checks/archive.json +1 -1
- package/dist/artifacts/prev-checks/docker_x64.json +1 -1
- package/dist/docker/Dockerfile-prev-checks +6 -1
- package/dist/tengo/software/main.sw.json +1 -1
- package/dist/tengo/software/prev-checks.sw.json +1 -1
- package/package.json +2 -2
- package/pkg-platforma-open-milaboratories.run-diff-clonotype-abundance-deseq2-r.software-main-1.14.1.tgz +0 -0
- package/pkg-platforma-open-milaboratories.run-diff-clonotype-abundance-deseq2-r.software-prev-checks-1.14.1.tgz +0 -0
- package/pkg-platforma-open-milaboratories.run-diff-clonotype-abundance-deseq2-r.software-main-1.14.0.tgz +0 -0
- package/pkg-platforma-open-milaboratories.run-diff-clonotype-abundance-deseq2-r.software-prev-checks-1.14.0.tgz +0 -0
package/.turbo/turbo-build.log
CHANGED
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WARN Issue while reading "/home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.run-diff-clonotype-abundance-deseq2-r.software@1.14.
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> @platforma-open/milaboratories.run-diff-clonotype-abundance-deseq2-r.software@1.14.1 build /home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/software
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[32minfo[39m: Building docker image...
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908
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995
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996
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997
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998
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999
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1000
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1001
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1002
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1003
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1004
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1005
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1007
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1008
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1009
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1010
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1011
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1013
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1014
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1015
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#7 DONE
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75
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#7 0.191 Get:2 http://deb.debian.org/debian testing InRelease [147 kB]
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#7 0.331 Get:3 http://deb.debian.org/debian testing-updates InRelease [45.1 kB]
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81
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#7 1.939 Fetched 20.3 MB in 2s (11.5 MB/s)
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#7 1.939 Reading package lists...
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#7 2.671 Reading package lists...
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84
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#7 3.475 Building dependency tree...
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85
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#7 3.642 Reading state information...
|
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86
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#7 3.843 libbz2-dev is already the newest version (1.0.8-6).
|
|
87
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+
#7 3.843 libbz2-dev set to manually installed.
|
|
88
|
+
#7 3.843 The following additional packages will be installed:
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89
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+
#7 3.843 bsdutils comerr-dev fontconfig fontconfig-config gir1.2-freedesktop
|
|
90
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+
#7 3.843 gir1.2-freedesktop-dev gir1.2-glib-2.0 gir1.2-glib-2.0-dev
|
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91
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#7 3.843 gir1.2-harfbuzz-0.0 girepository-tools icu-devtools krb5-multidev
|
|
92
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#7 3.843 libblkid-dev libblkid1 libbrotli-dev libbrotli1 libc-bin libc-dev-bin
|
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93
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+
#7 3.843 libc-l10n libc6 libc6-dev libcairo-gobject2 libcairo-script-interpreter2
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94
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+
#7 3.843 libcairo2 libcom-err2 libcurl4t64 libelf1t64 libevent-2.1-7t64 libexpat1
|
|
95
|
+
#7 3.843 libexpat1-dev libffi-dev libffi8 libfontconfig-dev libfontconfig1
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96
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+
#7 3.843 libfribidi0 libgio-2.0-dev libgio-2.0-dev-bin libgirepository-2.0-0
|
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97
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#7 3.843 libgit2-1.9 libglib2.0-0t64 libglib2.0-bin libglib2.0-data libglib2.0-dev
|
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98
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+
#7 3.843 libglib2.0-dev-bin libgmp-dev libgmp10 libgmpxx4ldbl libgnutls-dane0t64
|
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99
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+
#7 3.843 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgraphite2-3
|
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100
|
+
#7 3.843 libgraphite2-dev libgsl28 libgslcblas0 libgssapi-krb5-2 libgssrpc4t64
|
|
101
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+
#7 3.843 libharfbuzz-cairo0 libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz-subset0
|
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102
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+
#7 3.843 libharfbuzz0b libhogweed6t64 libhttp-parser-dev libhttp-parser2.9 libice-dev
|
|
103
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+
#7 3.843 libicu-dev libicu76 libidn2-0 libidn2-dev libjbig-dev libjpeg62-turbo
|
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104
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+
#7 3.843 libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12
|
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105
|
+
#7 3.843 libkdb5-10t64 libkrb5-3 libkrb5-dev libkrb5support0 liblastlog2-2
|
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106
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+
#7 3.843 libldap-dev libldap2 liblerc-dev libltdl7 liblzma5 liblzo2-2 libmariadb-dev
|
|
107
|
+
#7 3.843 libmariadb-dev-compat libmariadb3 libmbedcrypto16 libmbedtls-dev
|
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108
|
+
#7 3.843 libmbedtls21 libmbedx509-7 libmount-dev libmount1 libnettle8t64
|
|
109
|
+
#7 3.843 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16
|
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110
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+
#7 3.843 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libodbc2
|
|
111
|
+
#7 3.843 libodbccr2 libodbcinst2 libp11-kit-dev libp11-kit0 libpcre2-16-0
|
|
112
|
+
#7 3.843 libpcre2-32-0 libpcre2-8-0 libpcre2-posix3 libpixman-1-0 libpixman-1-dev
|
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113
|
+
#7 3.843 libpng16-16t64 libpq5 libpsl-dev libpython3-stdlib libpython3.13-minimal
|
|
114
|
+
#7 3.844 libpython3.13-stdlib librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db
|
|
115
|
+
#7 3.844 libselinux1 libselinux1-dev libsepol-dev libsepol2 libsharpyuv-dev libsm-dev
|
|
116
|
+
#7 3.844 libsm6 libsmartcols1 libsqlite3-0 libssl3t64 libsysprof-capture-4-dev
|
|
117
|
+
#7 3.844 libtasn1-6-dev libtiff-dev libtiff6 libtiffxx6 libunbound8 libuuid1
|
|
118
|
+
#7 3.844 libwebp-dev libwebpdecoder3 libwebpdemux2 libwebpmux3 libx11-6 libx11-data
|
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119
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+
#7 3.844 libx11-dev libxau-dev libxcb-render0-dev libxcb-shm0-dev libxcb1-dev
|
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120
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+
#7 3.844 libxdmcp-dev libxext-dev libxml2-16 libxrender-dev libxrender1 libzstd-dev
|
|
121
|
+
#7 3.844 libzstd1 locales login mariadb-common media-types mount mysql-common
|
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122
|
+
#7 3.844 native-architecture netbase nettle-dev openssl openssl-provider-legacy
|
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123
|
+
#7 3.844 python3 python3-minimal python3-packaging python3.13 python3.13-minimal
|
|
124
|
+
#7 3.844 unixodbc-common util-linux uuid-dev x11proto-dev xorg-sgml-doctools
|
|
125
|
+
#7 3.844 xtrans-dev xz-utils
|
|
126
|
+
#7 3.845 Suggested packages:
|
|
127
|
+
#7 3.845 doc-base krb5-doc libcairo2-doc libcurl4-doc libidn-dev freetype2-doc
|
|
128
|
+
#7 3.845 libglib2.0-doc libgdk-pixbuf2.0-bin libxml2-utils gmp-doc libgmp10-doc
|
|
129
|
+
#7 3.845 libmpfr-dev dns-root-data gnutls-bin gnutls-doc libgraphite2-utils
|
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130
|
+
#7 3.845 gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-user
|
|
131
|
+
#7 3.845 libice-doc libmbedtls-doc libnghttp2-doc odbc-postgresql tdsodbc p11-kit-doc
|
|
132
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+
#7 3.845 postgresql-doc-18 libpq-oauth libsm-doc sqlite3-doc libssl-doc libx11-doc
|
|
133
|
+
#7 3.845 libxcb-doc libxext-doc python3-doc python3-tk python3-venv python3.13-venv
|
|
134
|
+
#7 3.845 python3.13-doc binfmt-support
|
|
135
|
+
#7 3.845 Recommended packages:
|
|
136
|
+
#7 3.845 libtasn1-doc
|
|
137
|
+
#7 5.705 The following NEW packages will be installed:
|
|
138
|
+
#7 5.705 comerr-dev default-libmysqlclient-dev gir1.2-freedesktop
|
|
139
|
+
#7 5.705 gir1.2-freedesktop-dev gir1.2-glib-2.0 gir1.2-glib-2.0-dev
|
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140
|
+
#7 5.705 gir1.2-harfbuzz-0.0 girepository-tools krb5-multidev libblkid-dev
|
|
141
|
+
#7 5.705 libbrotli-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2-dev
|
|
142
|
+
#7 5.705 libcurl4-openssl-dev libelf1t64 libevent-2.1-7t64 libexpat1-dev libffi-dev
|
|
143
|
+
#7 5.706 libfontconfig-dev libfreetype-dev libfribidi-dev libgio-2.0-dev
|
|
144
|
+
#7 5.706 libgio-2.0-dev-bin libgirepository-2.0-0 libgit2-1.9 libgit2-dev
|
|
145
|
+
#7 5.706 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgmp-dev
|
|
146
|
+
#7 5.706 libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev
|
|
147
|
+
#7 5.706 libgraphite2-dev libgsl-dev libgsl28 libgslcblas0 libgssrpc4t64
|
|
148
|
+
#7 5.706 libharfbuzz-cairo0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0
|
|
149
|
+
#7 5.706 libharfbuzz-subset0 libhttp-parser-dev libhttp-parser2.9 libice-dev libicu76
|
|
150
|
+
#7 5.706 libidn2-dev libjbig-dev libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64
|
|
151
|
+
#7 5.706 libkrb5-dev liblastlog2-2 libldap-dev liblerc-dev libltdl7 liblzo2-2
|
|
152
|
+
#7 5.706 libmariadb-dev libmariadb-dev-compat libmariadb3 libmbedcrypto16
|
|
153
|
+
#7 5.706 libmbedtls-dev libmbedtls21 libmbedx509-7 libmount-dev libnghttp2-dev
|
|
154
|
+
#7 5.706 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0
|
|
155
|
+
#7 5.706 libngtcp2-dev libodbc2 libodbccr2 libodbcinst2 libp11-kit-dev
|
|
156
|
+
#7 5.706 libpixman-1-dev libpq-dev libpq5 libpsl-dev libpython3-stdlib
|
|
157
|
+
#7 5.706 libpython3.13-minimal libpython3.13-stdlib librtmp-dev libsasl2-dev
|
|
158
|
+
#7 5.706 libselinux1-dev libsepol-dev libsharpyuv-dev libsm-dev libsqlite3-0
|
|
159
|
+
#7 5.706 libsqlite3-dev libssh2-1-dev libssl-dev libsysprof-capture-4-dev
|
|
160
|
+
#7 5.706 libtasn1-6-dev libtiff-dev libtiff5-dev libtiffxx6 libunbound8 libwebp-dev
|
|
161
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+
#7 5.706 libwebpdecoder3 libwebpdemux2 libwebpmux3 libx11-dev libxau-dev
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162
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+
#7 5.706 libxcb-render0-dev libxcb-shm0-dev libxcb1-dev libxdmcp-dev libxext-dev
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163
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+
#7 5.707 libxml2-16 libxml2-dev libxrender-dev libzstd-dev mariadb-common media-types
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164
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+
#7 5.707 mysql-common native-architecture netbase nettle-dev python3 python3-minimal
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165
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+
#7 5.707 python3-packaging python3.13 python3.13-minimal unixodbc-common unixodbc-dev
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166
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+
#7 5.707 uuid-dev x11proto-dev xorg-sgml-doctools xtrans-dev
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167
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+
#7 5.708 The following packages will be upgraded:
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168
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+
#7 5.708 bsdutils fontconfig fontconfig-config icu-devtools libblkid1 libbrotli1
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169
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+
#7 5.708 libc-bin libc-dev-bin libc-l10n libc6 libc6-dev libcairo2 libcom-err2
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170
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+
#7 5.708 libcurl4t64 libexpat1 libffi8 libfontconfig1 libfribidi0 libglib2.0-0t64
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171
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#7 5.708 libgmp10 libgnutls30t64 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
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172
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#7 5.708 libhogweed6t64 libicu-dev libidn2-0 libjpeg-dev libjpeg62-turbo
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173
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#7 5.709 libjpeg62-turbo-dev libk5crypto3 libkrb5-3 libkrb5support0 libldap2
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174
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#7 5.709 liblzma-dev liblzma5 libmount1 libnettle8t64 libnghttp2-14 libnghttp3-9
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175
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#7 5.709 libp11-kit0 libpcre2-16-0 libpcre2-32-0 libpcre2-8-0 libpcre2-dev
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176
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#7 5.709 libpcre2-posix3 libpixman-1-0 libpng-dev libpng16-16t64 librtmp1 libsasl2-2
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#7 5.709 libsasl2-modules-db libselinux1 libsepol2 libsm6 libsmartcols1 libssl3t64
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#7 5.709 libtiff6 libuuid1 libx11-6 libx11-data libxrender1 libzstd1 locales login
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#7 5.709 mount openssl openssl-provider-legacy util-linux xz-utils
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180
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#7 5.779 70 upgraded, 134 newly installed, 0 to remove and 145 not upgraded.
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#7 5.779 Need to get 95.2 MB of archives.
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#7 5.779 After this operation, 216 MB of additional disk space will be used.
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#7 5.779 Get:1 http://deb.debian.org/debian testing/main amd64 liblastlog2-2 amd64 2.41.2-1 [28.9 kB]
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#7 5.822 Get:2 http://deb.debian.org/debian testing/main amd64 libuuid1 amd64 2.41.2-1 [38.1 kB]
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#7 5.827 Get:3 http://deb.debian.org/debian testing/main amd64 bsdutils amd64 1:2.41.2-1 [93.4 kB]
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#7 5.846 Get:4 http://deb.debian.org/debian testing/main amd64 libblkid1 amd64 2.41.2-1 [173 kB]
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#7 5.862 Get:5 http://deb.debian.org/debian testing/main amd64 libmount1 amd64 2.41.2-1 [211 kB]
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#7 5.876 Get:6 http://deb.debian.org/debian testing/main amd64 libsmartcols1 amd64 2.41.2-1 [144 kB]
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#7 5.880 Get:7 http://deb.debian.org/debian testing/main amd64 util-linux amd64 2.41.2-1 [1,257 kB]
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#7 5.910 Get:8 http://deb.debian.org/debian testing/main amd64 mount amd64 2.41.2-1 [162 kB]
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#7 5.911 Get:10 http://deb.debian.org/debian testing/main amd64 login amd64 1:4.16.0-2+really2.41.2-1 [105 kB]
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#7 5.930 Get:11 http://deb.debian.org/debian testing/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB]
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#7 5.945 Get:12 http://deb.debian.org/debian testing/main amd64 python3.13-minimal amd64 3.13.7-1 [2,216 kB]
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#7 5.975 Get:13 http://deb.debian.org/debian testing/main amd64 media-types all 13.0.0 [29.3 kB]
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#7 5.989 Get:14 http://deb.debian.org/debian testing/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1,960 kB]
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#7 5.997 Get:15 http://deb.debian.org/debian testing/main amd64 python3.13 amd64 3.13.7-1 [761 kB]
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#7 5.999 Get:16 http://deb.debian.org/debian testing/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1,518 kB]
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#7 6.014 Get:17 http://deb.debian.org/debian testing/main amd64 gir1.2-glib-2.0 amd64 2.84.4-3 [198 kB]
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#7 6.015 Get:18 http://deb.debian.org/debian testing/main amd64 gir1.2-glib-2.0-dev amd64 2.84.4-3 [916 kB]
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#7 6.031 Get:19 http://deb.debian.org/debian testing/main amd64 libgirepository-2.0-0 amd64 2.84.4-3 [143 kB]
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#7 6.045 Get:20 http://deb.debian.org/debian testing/main amd64 girepository-tools amd64 2.84.4-3 [150 kB]
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#7 6.058 Get:21 http://deb.debian.org/debian testing/main amd64 uuid-dev amd64 2.41.2-1 [49.3 kB]
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#7 6.076 Get:22 http://deb.debian.org/debian testing/main amd64 libblkid-dev amd64 2.41.2-1 [210 kB]
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#7 6.077 Get:23 http://deb.debian.org/debian testing/main amd64 libmount-dev amd64 2.41.2-1 [31.1 kB]
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#7 6.090 Get:24 http://deb.debian.org/debian testing/main amd64 libgio-2.0-dev amd64 2.84.4-3 [1,688 kB]
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#7 6.108 Get:25 http://deb.debian.org/debian testing/main amd64 libglib2.0-data all 2.84.4-3 [1,286 kB]
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#7 6.145 Get:26 http://deb.debian.org/debian testing/main amd64 libglib2.0-bin amd64 2.84.4-3 [130 kB]
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#7 6.164 Get:27 http://deb.debian.org/debian testing/main amd64 libgio-2.0-dev-bin amd64 2.84.4-3 [166 kB]
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#7 6.198 Get:28 http://deb.debian.org/debian testing/main amd64 libglib2.0-dev-bin amd64 2.84.4-3 [54.7 kB]
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210
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#7 6.209 Get:29 http://deb.debian.org/debian testing/main amd64 libglib2.0-dev amd64 2.84.4-3 [55.5 kB]
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#7 6.209 Get:9 http://deb.debian.org/debian sid/main amd64 libc-l10n all 2.41-12 [739 kB]
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#7 6.234 Get:30 http://deb.debian.org/debian sid/main amd64 locales all 2.41-12 [3,924 kB]
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213
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#7 6.273 Get:31 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB]
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214
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#7 6.541 Get:32 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-12 [1,991 kB]
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215
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#7 6.569 Get:33 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.41-12 [2,846 kB]
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216
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#7 6.629 Get:34 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.41-12 [637 kB]
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217
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#7 6.647 Get:35 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB]
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218
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#7 6.791 Get:36 http://deb.debian.org/debian sid/main amd64 libpcre2-dev amd64 10.46-1 [853 kB]
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219
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#7 7.037 Get:37 http://deb.debian.org/debian sid/main amd64 libpcre2-16-0 amd64 10.46-1 [281 kB]
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220
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#7 7.056 Get:38 http://deb.debian.org/debian sid/main amd64 libpcre2-32-0 amd64 10.46-1 [268 kB]
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221
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#7 7.079 Get:39 http://deb.debian.org/debian sid/main amd64 libpcre2-posix3 amd64 10.46-1 [63.9 kB]
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#7 7.202 Get:40 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB]
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223
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#7 7.236 Get:41 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB]
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224
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#7 7.250 Get:42 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.3-1 [112 kB]
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225
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#7 7.282 Get:43 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.4-1 [308 kB]
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226
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#7 7.299 Get:44 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.7+dfsg-2 [308 kB]
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227
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#7 7.313 Get:45 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.4-1 [2,446 kB]
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228
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#7 7.326 Get:46 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB]
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229
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#7 7.342 Get:47 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB]
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230
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#7 7.860 Get:48 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB]
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231
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#7 7.876 Get:49 http://deb.debian.org/debian sid/main amd64 liblzma-dev amd64 5.8.1-2 [349 kB]
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232
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#7 7.890 Get:50 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.8.1-2 [310 kB]
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233
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#7 7.904 Get:51 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB]
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234
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#7 8.037 Get:52 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.7-1 [28.3 kB]
|
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235
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#7 8.050 Get:53 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB]
|
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236
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#7 8.082 Get:54 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB]
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237
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#7 8.104 Get:55 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB]
|
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238
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#7 8.106 Get:56 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.1-2 [660 kB]
|
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239
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+
#7 8.136 Get:57 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB]
|
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240
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#7 8.181 Get:58 http://deb.debian.org/debian sid/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB]
|
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241
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#7 8.199 Get:59 http://deb.debian.org/debian sid/main amd64 mysql-common all 5.8+1.1.1 [6,784 B]
|
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242
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#7 8.217 Get:60 http://deb.debian.org/debian sid/main amd64 mariadb-common all 1:11.8.3-1 [28.8 kB]
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243
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#7 8.247 Get:61 http://deb.debian.org/debian sid/main amd64 libmariadb3 amd64 1:11.8.3-1+b1 [188 kB]
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244
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#7 8.263 Get:62 http://deb.debian.org/debian sid/main amd64 libssl-dev amd64 3.5.4-1 [2,980 kB]
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245
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#7 8.289 Get:63 http://deb.debian.org/debian sid/main amd64 libmariadb-dev amd64 1:11.8.3-1+b1 [277 kB]
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246
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#7 8.311 Get:64 http://deb.debian.org/debian sid/main amd64 libmariadb-dev-compat amd64 1:11.8.3-1+b1 [27.9 kB]
|
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247
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#7 8.338 Get:65 http://deb.debian.org/debian sid/main amd64 default-libmysqlclient-dev amd64 1.1.1 [3,252 B]
|
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248
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#7 8.374 Get:66 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB]
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249
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#7 8.394 Get:67 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB]
|
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250
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#7 8.397 Get:68 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB]
|
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251
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#7 8.427 Get:69 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB]
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252
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#7 8.449 Get:70 http://deb.debian.org/debian sid/main amd64 libpng-dev amd64 1.6.50-1 [366 kB]
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253
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#7 8.470 Get:71 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB]
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254
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#7 8.490 Get:72 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
|
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255
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#7 8.521 Get:73 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB]
|
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256
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#7 8.547 Get:74 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB]
|
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257
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#7 8.565 Get:75 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB]
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258
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#7 8.568 Get:76 http://deb.debian.org/debian sid/main amd64 libcairo-gobject2 amd64 1.18.4-1+b1 [130 kB]
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259
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#7 8.586 Get:77 http://deb.debian.org/debian sid/main amd64 gir1.2-freedesktop amd64 1.86.0-6 [61.4 kB]
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260
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#7 8.602 Get:78 http://deb.debian.org/debian sid/main amd64 gir1.2-freedesktop-dev amd64 1.86.0-6 [52.5 kB]
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261
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#7 8.639 Get:79 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB]
|
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262
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#7 8.654 Get:80 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB]
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263
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#7 8.669 Get:81 http://deb.debian.org/debian sid/main amd64 libharfbuzz-gobject0 amd64 12.1.0-1 [31.8 kB]
|
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264
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#7 8.689 Get:82 http://deb.debian.org/debian sid/main amd64 gir1.2-harfbuzz-0.0 amd64 12.1.0-1 [41.7 kB]
|
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265
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#7 8.707 Get:83 http://deb.debian.org/debian sid/main amd64 native-architecture all 0.2.6 [2,264 B]
|
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266
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#7 8.726 Get:84 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-4 [9,722 kB]
|
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267
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#7 8.787 Get:85 http://deb.debian.org/debian sid/main amd64 libicu-dev amd64 76.1-4 [10.8 MB]
|
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268
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#7 8.833 Get:86 http://deb.debian.org/debian sid/main amd64 icu-devtools amd64 76.1-4 [215 kB]
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269
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#7 8.834 Get:87 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
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270
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#7 8.852 Get:88 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
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271
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#7 8.854 Get:89 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
|
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272
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#7 9.083 Get:90 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
|
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273
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#7 9.103 Get:91 http://deb.debian.org/debian sid/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB]
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274
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#7 9.126 Get:92 http://deb.debian.org/debian sid/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB]
|
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275
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#7 9.153 Get:93 http://deb.debian.org/debian sid/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB]
|
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276
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#7 9.172 Get:94 http://deb.debian.org/debian sid/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB]
|
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277
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#7 9.195 Get:95 http://deb.debian.org/debian sid/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB]
|
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278
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#7 9.221 Get:96 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
|
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279
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#7 9.258 Get:97 http://deb.debian.org/debian sid/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB]
|
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280
|
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#7 9.296 Get:98 http://deb.debian.org/debian sid/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB]
|
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281
|
+
#7 9.318 Get:99 http://deb.debian.org/debian sid/main amd64 libcairo-script-interpreter2 amd64 1.18.4-1+b1 [59.3 kB]
|
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282
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+
#7 9.355 Get:100 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB]
|
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283
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#7 9.380 Get:101 http://deb.debian.org/debian sid/main amd64 libfreetype-dev amd64 2.13.3+dfsg-1 [622 kB]
|
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284
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+
#7 9.415 Get:102 http://deb.debian.org/debian sid/main amd64 libfontconfig-dev amd64 2.15.0-2.4 [426 kB]
|
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285
|
+
#7 9.435 Get:103 http://deb.debian.org/debian sid/main amd64 libffi-dev amd64 3.5.2-2 [63.7 kB]
|
|
286
|
+
#7 9.456 Get:104 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.8.1-1 [296 kB]
|
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287
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#7 9.476 Get:105 http://deb.debian.org/debian sid/main amd64 libsepol-dev amd64 3.8.1-1 [373 kB]
|
|
288
|
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#7 9.496 Get:106 http://deb.debian.org/debian sid/main amd64 libselinux1-dev amd64 3.8.1-1 [169 kB]
|
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289
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#7 9.512 Get:107 http://deb.debian.org/debian sid/main amd64 libsysprof-capture-4-dev amd64 49.0-1 [53.4 kB]
|
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290
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#7 9.525 Get:108 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.193-3 [192 kB]
|
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291
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#7 9.539 Get:109 http://deb.debian.org/debian sid/main amd64 python3-packaging all 25.0-1 [56.6 kB]
|
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292
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+
#7 9.565 Get:110 http://deb.debian.org/debian sid/main amd64 libpixman-1-dev amd64 0.46.4-1 [11.9 kB]
|
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293
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#7 9.609 Get:111 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB]
|
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294
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#7 9.638 Get:112 http://deb.debian.org/debian sid/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
|
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295
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#7 9.651 Get:113 http://deb.debian.org/debian sid/main amd64 x11proto-dev all 2024.1-1 [603 kB]
|
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296
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#7 9.654 Get:114 http://deb.debian.org/debian sid/main amd64 libice-dev amd64 2:1.1.1-1 [73.8 kB]
|
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297
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#7 9.697 Get:115 http://deb.debian.org/debian sid/main amd64 libsm-dev amd64 2:1.2.6-1 [39.7 kB]
|
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298
|
+
#7 9.721 Get:116 http://deb.debian.org/debian sid/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB]
|
|
299
|
+
#7 9.737 Get:117 http://deb.debian.org/debian sid/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB]
|
|
300
|
+
#7 9.755 Get:118 http://deb.debian.org/debian sid/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB]
|
|
301
|
+
#7 9.768 Get:119 http://deb.debian.org/debian sid/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB]
|
|
302
|
+
#7 9.796 Get:120 http://deb.debian.org/debian sid/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB]
|
|
303
|
+
#7 9.818 Get:121 http://deb.debian.org/debian sid/main amd64 libxcb-render0-dev amd64 1.17.0-2+b1 [118 kB]
|
|
304
|
+
#7 9.834 Get:122 http://deb.debian.org/debian sid/main amd64 libxcb-shm0-dev amd64 1.17.0-2+b1 [108 kB]
|
|
305
|
+
#7 9.852 Get:123 http://deb.debian.org/debian sid/main amd64 libxext-dev amd64 2:1.3.4-1+b3 [104 kB]
|
|
306
|
+
#7 9.879 Get:124 http://deb.debian.org/debian sid/main amd64 libxrender-dev amd64 1:0.9.12-1 [39.0 kB]
|
|
307
|
+
#7 9.907 Get:125 http://deb.debian.org/debian sid/main amd64 libcairo2-dev amd64 1.18.4-1+b1 [43.4 kB]
|
|
308
|
+
#7 9.946 Get:126 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB]
|
|
309
|
+
#7 9.965 Get:127 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB]
|
|
310
|
+
#7 9.984 Get:128 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB]
|
|
311
|
+
#7 9.984 Get:129 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB]
|
|
312
|
+
#7 9.985 Get:130 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB]
|
|
313
|
+
#7 10.01 Get:131 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB]
|
|
314
|
+
#7 10.03 Get:132 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB]
|
|
315
|
+
#7 10.06 Get:133 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB]
|
|
316
|
+
#7 10.08 Get:134 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB]
|
|
317
|
+
#7 10.08 Get:135 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.10-2 [1,484 kB]
|
|
318
|
+
#7 10.10 Get:136 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB]
|
|
319
|
+
#7 10.13 Get:137 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.16.0-4 [408 kB]
|
|
320
|
+
#7 10.15 Get:138 http://deb.debian.org/debian sid/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB]
|
|
321
|
+
#7 10.16 Get:139 http://deb.debian.org/debian sid/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB]
|
|
322
|
+
#7 10.19 Get:140 http://deb.debian.org/debian sid/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB]
|
|
323
|
+
#7 10.22 Get:141 http://deb.debian.org/debian sid/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB]
|
|
324
|
+
#7 10.27 Get:142 http://deb.debian.org/debian sid/main amd64 libnghttp3-dev amd64 1.12.0-1 [95.5 kB]
|
|
325
|
+
#7 10.30 Get:143 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl-dev amd64 1.16.0-1 [28.4 kB]
|
|
326
|
+
#7 10.35 Get:144 http://deb.debian.org/debian sid/main amd64 libngtcp2-dev amd64 1.16.0-1 [193 kB]
|
|
327
|
+
#7 10.36 Get:145 http://deb.debian.org/debian sid/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB]
|
|
328
|
+
#7 10.38 Get:146 http://deb.debian.org/debian sid/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB]
|
|
329
|
+
#7 10.40 Get:147 http://deb.debian.org/debian sid/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB]
|
|
330
|
+
#7 10.40 Get:148 http://deb.debian.org/debian sid/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB]
|
|
331
|
+
#7 10.42 Get:149 http://deb.debian.org/debian sid/main amd64 libunbound8 amd64 1.24.0-2 [614 kB]
|
|
332
|
+
#7 10.44 Get:150 http://deb.debian.org/debian sid/main amd64 libgnutls-dane0t64 amd64 3.8.10-2 [458 kB]
|
|
333
|
+
#7 10.46 Get:151 http://deb.debian.org/debian sid/main amd64 libgnutls-openssl27t64 amd64 3.8.10-2 [458 kB]
|
|
334
|
+
#7 10.47 Get:152 http://deb.debian.org/debian sid/main amd64 libp11-kit-dev amd64 0.25.9-2 [220 kB]
|
|
335
|
+
#7 10.47 Get:153 http://deb.debian.org/debian sid/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB]
|
|
336
|
+
#7 10.51 Get:154 http://deb.debian.org/debian sid/main amd64 nettle-dev amd64 3.10.2-1 [1,322 kB]
|
|
337
|
+
#7 10.53 Get:155 http://deb.debian.org/debian sid/main amd64 libgnutls28-dev amd64 3.8.10-2 [1,423 kB]
|
|
338
|
+
#7 10.54 Get:156 http://deb.debian.org/debian sid/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB]
|
|
339
|
+
#7 10.57 Get:157 http://deb.debian.org/debian sid/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB]
|
|
340
|
+
#7 10.58 Get:158 http://deb.debian.org/debian sid/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB]
|
|
341
|
+
#7 10.60 Get:159 http://deb.debian.org/debian sid/main amd64 libcurl4-openssl-dev amd64 8.16.0-4 [530 kB]
|
|
342
|
+
#7 10.63 Get:160 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB]
|
|
343
|
+
#7 10.64 Get:161 http://deb.debian.org/debian sid/main amd64 libfribidi-dev amd64 1.0.16-3 [65.9 kB]
|
|
344
|
+
#7 10.66 Get:162 http://deb.debian.org/debian sid/main amd64 libhttp-parser2.9 amd64 2.9.4-6+b2 [21.2 kB]
|
|
345
|
+
#7 10.66 Get:163 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB]
|
|
346
|
+
#7 10.67 Get:164 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB]
|
|
347
|
+
#7 10.70 Get:165 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB]
|
|
348
|
+
#7 10.72 Get:166 http://deb.debian.org/debian sid/main amd64 libgit2-1.9 amd64 1.9.1+ds-1 [555 kB]
|
|
349
|
+
#7 10.75 Get:167 http://deb.debian.org/debian sid/main amd64 libhttp-parser-dev amd64 2.9.4-6+b2 [20.9 kB]
|
|
350
|
+
#7 10.77 Get:168 http://deb.debian.org/debian sid/main amd64 libmbedtls-dev amd64 3.6.4-2 [834 kB]
|
|
351
|
+
#7 10.81 Get:169 http://deb.debian.org/debian sid/main amd64 libgit2-dev amd64 1.9.1+ds-1 [846 kB]
|
|
352
|
+
#7 10.83 Get:170 http://deb.debian.org/debian sid/main amd64 libgraphite2-dev amd64 1.3.14-11 [20.8 kB]
|
|
353
|
+
#7 10.84 Get:171 http://deb.debian.org/debian sid/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB]
|
|
354
|
+
#7 10.90 Get:172 http://deb.debian.org/debian sid/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1,068 kB]
|
|
355
|
+
#7 10.93 Get:173 http://deb.debian.org/debian sid/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1,336 kB]
|
|
356
|
+
#7 10.95 Get:174 http://deb.debian.org/debian sid/main amd64 libharfbuzz-cairo0 amd64 12.1.0-1 [28.6 kB]
|
|
357
|
+
#7 10.96 Get:175 http://deb.debian.org/debian sid/main amd64 libharfbuzz-icu0 amd64 12.1.0-1 [14.2 kB]
|
|
358
|
+
#7 10.99 Get:176 http://deb.debian.org/debian sid/main amd64 libharfbuzz-subset0 amd64 12.1.0-1 [598 kB]
|
|
359
|
+
#7 11.02 Get:177 http://deb.debian.org/debian sid/main amd64 libharfbuzz-dev amd64 12.1.0-1 [149 kB]
|
|
360
|
+
#7 11.04 Get:178 http://deb.debian.org/debian sid/main amd64 libjbig-dev amd64 2.1-6.1+b2 [31.4 kB]
|
|
361
|
+
#7 11.04 Get:179 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB]
|
|
362
|
+
#7 11.04 Get:180 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB]
|
|
363
|
+
#7 11.08 Get:181 http://deb.debian.org/debian sid/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB]
|
|
364
|
+
#7 11.10 Get:182 http://deb.debian.org/debian sid/main amd64 liblerc-dev amd64 4.0.0+ds-5 [183 kB]
|
|
365
|
+
#7 11.13 Get:183 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.5.4-5 [416 kB]
|
|
366
|
+
#7 11.15 Get:184 http://deb.debian.org/debian sid/main amd64 libodbc2 amd64 2.3.12-2+b1 [152 kB]
|
|
367
|
+
#7 11.19 Get:185 http://deb.debian.org/debian sid/main amd64 libodbccr2 amd64 2.3.12-2+b1 [18.4 kB]
|
|
368
|
+
#7 11.21 Get:186 http://deb.debian.org/debian sid/main amd64 unixodbc-common all 2.3.12-2 [8,640 B]
|
|
369
|
+
#7 11.23 Get:187 http://deb.debian.org/debian sid/main amd64 libodbcinst2 amd64 2.3.12-2+b1 [35.4 kB]
|
|
370
|
+
#7 11.26 Get:188 http://deb.debian.org/debian sid/main amd64 libpq5 amd64 18.0-1 [251 kB]
|
|
371
|
+
#7 11.29 Get:189 http://deb.debian.org/debian sid/main amd64 libpq-dev amd64 18.0-1 [163 kB]
|
|
372
|
+
#7 11.32 Get:190 http://deb.debian.org/debian sid/main amd64 libsasl2-dev amd64 2.1.28+dfsg1-10 [235 kB]
|
|
373
|
+
#7 11.34 Get:191 http://deb.debian.org/debian sid/main amd64 libsharpyuv-dev amd64 1.5.0-0.1 [120 kB]
|
|
374
|
+
#7 11.36 Get:192 http://deb.debian.org/debian sid/main amd64 libsqlite3-dev amd64 3.46.1-8 [1,172 kB]
|
|
375
|
+
#7 11.39 Get:193 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB]
|
|
376
|
+
#7 11.43 Get:194 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB]
|
|
377
|
+
#7 11.46 Get:195 http://deb.debian.org/debian sid/main amd64 libwebpdecoder3 amd64 1.5.0-0.1 [208 kB]
|
|
378
|
+
#7 11.49 Get:196 http://deb.debian.org/debian sid/main amd64 libwebp-dev amd64 1.5.0-0.1 [450 kB]
|
|
379
|
+
#7 11.52 Get:197 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.1-1 [361 kB]
|
|
380
|
+
#7 11.56 Get:198 http://deb.debian.org/debian sid/main amd64 libtiffxx6 amd64 4.7.1-1 [174 kB]
|
|
381
|
+
#7 11.58 Get:199 http://deb.debian.org/debian sid/main amd64 libtiff-dev amd64 4.7.1-1 [504 kB]
|
|
382
|
+
#7 11.61 Get:200 http://deb.debian.org/debian sid/main amd64 libtiff5-dev amd64 4.7.1-1 [171 kB]
|
|
383
|
+
#7 11.64 Get:201 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB]
|
|
384
|
+
#7 11.64 Get:202 http://deb.debian.org/debian sid/main amd64 libxml2-dev amd64 2.14.6+dfsg-0.1 [756 kB]
|
|
385
|
+
#7 11.65 Get:203 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.4-1 [1,496 kB]
|
|
386
|
+
#7 11.69 Get:204 http://deb.debian.org/debian sid/main amd64 unixodbc-dev amd64 2.3.12-2+b1 [234 kB]
|
|
387
|
+
#7 11.94 debconf: unable to initialize frontend: Dialog
|
|
388
|
+
#7 11.94 debconf: (TERM is not set, so the dialog frontend is not usable.)
|
|
389
|
+
#7 11.94 debconf: falling back to frontend: Readline
|
|
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|
+
#7 11.96 debconf: unable to initialize frontend: Readline
|
|
391
|
+
#7 11.96 debconf: (This frontend requires a controlling tty.)
|
|
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|
+
#7 11.96 debconf: falling back to frontend: Teletype
|
|
393
|
+
#7 11.96 dpkg-preconfigure: unable to re-open stdin:
|
|
394
|
+
#7 12.05 Fetched 95.2 MB in 6s (16.0 MB/s)
|
|
395
|
+
#7 12.07 (Reading database ...
|
|
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|
+
#7 12.09 Preparing to unpack .../libc-l10n_2.41-12_all.deb ...
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|
+
#7 12.09 Unpacking libc-l10n (2.41-12) over (2.40-7) ...
|
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|
+
#7 12.29 Preparing to unpack .../locales_2.41-12_all.deb ...
|
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#7 12.29 Unpacking locales (2.41-12) over (2.40-7) ...
|
|
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|
+
#7 12.92 Preparing to unpack .../libc-dev-bin_2.41-12_amd64.deb ...
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#7 12.93 Unpacking libc-dev-bin (2.41-12) over (2.40-7) ...
|
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#7 12.95 Preparing to unpack .../libc6-dev_2.41-12_amd64.deb ...
|
|
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|
+
#7 12.95 Unpacking libc6-dev:amd64 (2.41-12) over (2.40-7) ...
|
|
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|
+
#7 13.42 Preparing to unpack .../libc6_2.41-12_amd64.deb ...
|
|
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|
+
#7 13.49 debconf: unable to initialize frontend: Dialog
|
|
406
|
+
#7 13.49 debconf: (TERM is not set, so the dialog frontend is not usable.)
|
|
407
|
+
#7 13.49 debconf: falling back to frontend: Readline
|
|
408
|
+
#7 13.49 debconf: unable to initialize frontend: Readline
|
|
409
|
+
#7 13.49 debconf: (This frontend requires a controlling tty.)
|
|
410
|
+
#7 13.49 debconf: falling back to frontend: Teletype
|
|
411
|
+
#7 13.52 Checking for services that may need to be restarted...
|
|
412
|
+
#7 13.53 Checking init scripts...
|
|
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|
+
#7 13.55 Unpacking libc6:amd64 (2.41-12) over (2.40-7) ...
|
|
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|
+
#7 13.85 Setting up libc6:amd64 (2.41-12) ...
|
|
415
|
+
#7 13.92 debconf: unable to initialize frontend: Dialog
|
|
416
|
+
#7 13.92 debconf: (TERM is not set, so the dialog frontend is not usable.)
|
|
417
|
+
#7 13.92 debconf: falling back to frontend: Readline
|
|
418
|
+
#7 13.92 debconf: unable to initialize frontend: Readline
|
|
419
|
+
#7 13.92 debconf: (This frontend requires a controlling tty.)
|
|
420
|
+
#7 13.92 debconf: falling back to frontend: Teletype
|
|
421
|
+
#7 13.94 Checking for services that may need to be restarted...
|
|
422
|
+
#7 13.94 Checking init scripts...
|
|
423
|
+
#7 13.94 Nothing to restart.
|
|
424
|
+
#7 13.97 (Reading database ...
|
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|
+
#7 13.98 Preparing to unpack .../libc-bin_2.41-12_amd64.deb ...
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#7 13.98 Unpacking libc-bin (2.41-12) over (2.40-7) ...
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#7 14.04 Setting up libc-bin (2.41-12) ...
|
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|
+
#7 14.08 Selecting previously unselected package libsqlite3-0:amd64.
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#7 14.08 (Reading database ...
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#7 14.09 Preparing to unpack .../libsqlite3-0_3.46.1-8_amd64.deb ...
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#7 14.10 Unpacking libsqlite3-0:amd64 (3.46.1-8) ...
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#7 14.14 Setting up libsqlite3-0:amd64 (3.46.1-8) ...
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#7 14.16 Selecting previously unselected package liblastlog2-2:amd64.
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#7 14.16 (Reading database ...
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#7 14.17 Preparing to unpack .../liblastlog2-2_2.41.2-1_amd64.deb ...
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#7 14.17 Unpacking liblastlog2-2:amd64 (2.41.2-1) ...
|
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#7 14.19 Setting up liblastlog2-2:amd64 (2.41.2-1) ...
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#7 14.21 (Reading database ...
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#7 14.22 Preparing to unpack .../libuuid1_2.41.2-1_amd64.deb ...
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#7 14.22 Unpacking libuuid1:amd64 (2.41.2-1) over (2.40.4-3) ...
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#7 14.24 Setting up libuuid1:amd64 (2.41.2-1) ...
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#7 14.26 (Reading database ...
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#7 14.27 Preparing to unpack .../bsdutils_1%3a2.41.2-1_amd64.deb ...
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#7 14.27 Unpacking bsdutils (1:2.41.2-1) over (1:2.40.4-3) ...
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#7 14.31 Setting up bsdutils (1:2.41.2-1) ...
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#7 14.32 (Reading database ...
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#7 14.34 Preparing to unpack .../libblkid1_2.41.2-1_amd64.deb ...
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#7 14.34 Unpacking libblkid1:amd64 (2.41.2-1) over (2.40.4-3) ...
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#7 14.37 Setting up libblkid1:amd64 (2.41.2-1) ...
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#7 14.39 (Reading database ...
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#7 14.40 Preparing to unpack .../libmount1_2.41.2-1_amd64.deb ...
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#7 14.40 Unpacking libmount1:amd64 (2.41.2-1) over (2.40.4-3) ...
|
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#7 18.91 dpkg: considering deconfiguration of libicu-dev:amd64, which would be broken by installation of icu-devtools ...
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#7 18.91 dpkg: yes, will deconfigure libicu-dev:amd64 (broken by icu-devtools)
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#7 19.87 Preparing to unpack .../053-libfontconfig-dev_2.15.0-2.4_amd64.deb ...
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#7 20.05 Selecting previously unselected package libmount-dev:amd64.
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#7 21.04 Selecting previously unselected package libngtcp2-crypto-ossl0:amd64.
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#7 21.18 Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) over (2.4+20151223.gitfa8646d.1-2+b5) ...
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#7 21.20 Unpacking libcurl4t64:amd64 (8.16.0-4) over (8.12.1-2) ...
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#7 21.95 Preparing to unpack .../118-libfribidi0_1.0.16-3_amd64.deb ...
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#7 21.97 Preparing to unpack .../119-libfribidi-dev_1.0.16-3_amd64.deb ...
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#7 22.00 Selecting previously unselected package libhttp-parser2.9:amd64.
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#7 22.02 Selecting previously unselected package libmbedcrypto16:amd64.
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#7 22.09 Selecting previously unselected package libgit2-1.9:amd64.
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#7 22.15 Selecting previously unselected package libmbedtls-dev:amd64.
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#7 23.00 Selecting previously unselected package libwebpdemux2:amd64.
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#7 23.23 Preparing to unpack .../159-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ...
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#7 23.27 Preparing to unpack .../160-libxml2-dev_2.14.6+dfsg-0.1_amd64.deb ...
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#7 23.61 update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
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1171
|
+
#7 29.12 Setting up libsqlite3-dev:amd64 (3.46.1-8) ...
|
|
1172
|
+
#7 29.13 Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-4) ...
|
|
1173
|
+
#7 29.13 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ...
|
|
1174
|
+
#7 29.13 Setting up libgssrpc4t64:amd64 (1.21.3-5) ...
|
|
1175
|
+
#7 29.13 Setting up uuid-dev:amd64 (2.41.2-1) ...
|
|
1176
|
+
#7 29.14 Setting up gir1.2-freedesktop-dev:amd64 (1.86.0-6) ...
|
|
1177
|
+
#7 29.14 Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ...
|
|
1178
|
+
#7 29.14 Setting up libxcb-render0-dev:amd64 (1.17.0-2+b1) ...
|
|
1179
|
+
#7 29.15 Setting up libgit2-1.9:amd64 (1.9.1+ds-1) ...
|
|
1180
|
+
#7 29.15 Setting up libxext-dev:amd64 (2:1.3.4-1+b3) ...
|
|
1181
|
+
#7 29.15 Setting up libharfbuzz-subset0:amd64 (12.1.0-1) ...
|
|
1182
|
+
#7 29.15 Setting up libxrender-dev:amd64 (1:0.9.12-1) ...
|
|
1183
|
+
#7 29.16 Setting up libgit2-dev:amd64 (1.9.1+ds-1) ...
|
|
1184
|
+
#7 29.16 Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ...
|
|
1185
|
+
#7 29.16 Setting up libgnutls28-dev:amd64 (3.8.10-2) ...
|
|
1186
|
+
#7 29.16 Setting up libblkid-dev:amd64 (2.41.2-1) ...
|
|
1187
|
+
#7 29.17 Setting up girepository-tools:amd64 (2.84.4-3) ...
|
|
1188
|
+
#7 29.18 Setting up libcurl4t64:amd64 (8.16.0-4) ...
|
|
1189
|
+
#7 29.18 Setting up libkdb5-10t64:amd64 (1.21.3-5) ...
|
|
1190
|
+
#7 29.18 Setting up libfontconfig-dev:amd64 (2.15.0-2.4) ...
|
|
1191
|
+
#7 29.18 Setting up libsm-dev:amd64 (2:1.2.6-1) ...
|
|
1192
|
+
#7 29.19 Setting up libjpeg-dev:amd64 (1:2.1.5-4) ...
|
|
1193
|
+
#7 29.19 Setting up libtiff-dev:amd64 (4.7.1-1) ...
|
|
1194
|
+
#7 29.19 Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ...
|
|
1195
|
+
#7 29.19 Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ...
|
|
1196
|
+
#7 29.19 Setting up libmount-dev:amd64 (2.41.2-1) ...
|
|
1197
|
+
#7 29.20 Setting up krb5-multidev:amd64 (1.21.3-5) ...
|
|
1198
|
+
#7 29.20 Setting up libglib2.0-dev-bin (2.84.4-3) ...
|
|
1199
|
+
#7 29.20 Setting up libgio-2.0-dev:amd64 (2.84.4-3) ...
|
|
1200
|
+
#7 29.20 Setting up libtiff5-dev:amd64 (4.7.1-1) ...
|
|
1201
|
+
#7 29.21 Setting up libkrb5-dev:amd64 (1.21.3-5) ...
|
|
1202
|
+
#7 29.21 Setting up libglib2.0-dev:amd64 (2.84.4-3) ...
|
|
1203
|
+
#7 29.21 Setting up libcurl4-openssl-dev:amd64 (8.16.0-4) ...
|
|
1204
|
+
#7 29.21 Setting up libcairo2-dev:amd64 (1.18.4-1+b1) ...
|
|
1205
|
+
#7 29.21 Setting up libharfbuzz-dev:amd64 (12.1.0-1) ...
|
|
1206
|
+
#7 29.22 Processing triggers for libc-bin (2.41-12) ...
|
|
1207
|
+
#7 DONE 29.6s
|
|
1216
1208
|
|
|
1217
1209
|
#8 [3/9] WORKDIR /app
|
|
1218
1210
|
#8 DONE 0.0s
|
|
1219
1211
|
|
|
1220
1212
|
#9 [4/9] RUN R -e "install.packages('renv', repos = 'https://cloud.r-project.org')"
|
|
1221
|
-
#9 0.
|
|
1222
|
-
#9 0.
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1223
|
-
#9 0.
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1224
|
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#9 0.
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1225
|
-
#9 0.
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1226
|
-
#9 0.
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1227
|
-
#9 0.
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1228
|
-
#9 0.
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|
1229
|
-
#9 0.
|
|
1230
|
-
#9 0.
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|
1231
|
-
#9 0.
|
|
1232
|
-
#9 0.
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|
1233
|
-
#9 0.
|
|
1234
|
-
#9 0.
|
|
1235
|
-
#9 0.
|
|
1236
|
-
#9 0.
|
|
1237
|
-
#9 0.
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1238
|
-
#9 0.
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1239
|
-
#9 0.
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1240
|
-
#9 0.
|
|
1241
|
-
#9 0.
|
|
1242
|
-
#9 0.
|
|
1243
|
-
#9 1.
|
|
1244
|
-
#9
|
|
1245
|
-
#9
|
|
1246
|
-
#9
|
|
1247
|
-
#9
|
|
1248
|
-
#9 2.
|
|
1249
|
-
#9 2.
|
|
1250
|
-
#9 2.
|
|
1251
|
-
#9 2.
|
|
1252
|
-
#9 2.
|
|
1253
|
-
#9 2.
|
|
1254
|
-
#9 10.
|
|
1255
|
-
#9 10.
|
|
1256
|
-
#9 10.
|
|
1257
|
-
#9 10.
|
|
1258
|
-
#9 10.
|
|
1259
|
-
#9 10.
|
|
1260
|
-
#9 10.
|
|
1261
|
-
#9 10.
|
|
1262
|
-
#9
|
|
1263
|
-
#9
|
|
1264
|
-
#9
|
|
1265
|
-
#9
|
|
1266
|
-
#9 11.
|
|
1267
|
-
#9 11.
|
|
1268
|
-
#9 11.
|
|
1269
|
-
#9 11.
|
|
1270
|
-
#9 11.
|
|
1271
|
-
#9 11.
|
|
1272
|
-
#9 11.
|
|
1273
|
-
#9 DONE 11.
|
|
1213
|
+
#9 0.187
|
|
1214
|
+
#9 0.187 R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
|
|
1215
|
+
#9 0.187 Copyright (C) 2024 The R Foundation for Statistical Computing
|
|
1216
|
+
#9 0.187 Platform: x86_64-pc-linux-gnu
|
|
1217
|
+
#9 0.187
|
|
1218
|
+
#9 0.187 R is free software and comes with ABSOLUTELY NO WARRANTY.
|
|
1219
|
+
#9 0.187 You are welcome to redistribute it under certain conditions.
|
|
1220
|
+
#9 0.187 Type 'license()' or 'licence()' for distribution details.
|
|
1221
|
+
#9 0.187
|
|
1222
|
+
#9 0.187 Natural language support but running in an English locale
|
|
1223
|
+
#9 0.187
|
|
1224
|
+
#9 0.187 R is a collaborative project with many contributors.
|
|
1225
|
+
#9 0.187 Type 'contributors()' for more information and
|
|
1226
|
+
#9 0.187 'citation()' on how to cite R or R packages in publications.
|
|
1227
|
+
#9 0.187
|
|
1228
|
+
#9 0.187 Type 'demo()' for some demos, 'help()' for on-line help, or
|
|
1229
|
+
#9 0.187 'help.start()' for an HTML browser interface to help.
|
|
1230
|
+
#9 0.187 Type 'q()' to quit R.
|
|
1231
|
+
#9 0.187
|
|
1232
|
+
#9 0.273 > install.packages('renv', repos = 'https://cloud.r-project.org')
|
|
1233
|
+
#9 0.275 Installing package into ‘/usr/local/lib/R/site-library’
|
|
1234
|
+
#9 0.275 (as ‘lib’ is unspecified)
|
|
1235
|
+
#9 1.514 trying URL 'https://cloud.r-project.org/src/contrib/renv_1.1.5.tar.gz'
|
|
1236
|
+
#9 2.126 Content type 'application/x-gzip' length 1255206 bytes (1.2 MB)
|
|
1237
|
+
#9 2.126 ==================================================
|
|
1238
|
+
#9 2.236 downloaded 1.2 MB
|
|
1239
|
+
#9 2.236
|
|
1240
|
+
#9 2.783 * installing *source* package ‘renv’ ...
|
|
1241
|
+
#9 2.804 ** package ‘renv’ successfully unpacked and MD5 sums checked
|
|
1242
|
+
#9 2.805 ** using staged installation
|
|
1243
|
+
#9 2.817 ** R
|
|
1244
|
+
#9 2.902 ** inst
|
|
1245
|
+
#9 2.911 ** byte-compile and prepare package for lazy loading
|
|
1246
|
+
#9 10.58 ** libs
|
|
1247
|
+
#9 10.58 using C compiler: ‘gcc (Debian 14.2.0-17) 14.2.0’
|
|
1248
|
+
#9 10.58 gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c renv.c -o renv.o
|
|
1249
|
+
#9 10.58 gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o renv.so renv.o -L/usr/lib/R/lib -lR
|
|
1250
|
+
#9 10.58 ** help
|
|
1251
|
+
#9 10.70 *** installing help indices
|
|
1252
|
+
#9 10.80 *** copying figures
|
|
1253
|
+
#9 10.80 ** building package indices
|
|
1254
|
+
#9 11.05 ** installing vignettes
|
|
1255
|
+
#9 11.05 ** testing if installed package can be loaded from temporary location
|
|
1256
|
+
#9 11.33 ** checking absolute paths in shared objects and dynamic libraries
|
|
1257
|
+
#9 11.34 ** testing if installed package can be loaded from final location
|
|
1258
|
+
#9 11.81 ** testing if installed package keeps a record of temporary installation path
|
|
1259
|
+
#9 11.82 * DONE (renv)
|
|
1260
|
+
#9 11.85
|
|
1261
|
+
#9 11.85 The downloaded source packages are in
|
|
1262
|
+
#9 11.85 ‘/tmp/Rtmp4CU9rR/downloaded_packages’
|
|
1263
|
+
#9 11.85 >
|
|
1264
|
+
#9 11.85 >
|
|
1265
|
+
#9 DONE 11.9s
|
|
1274
1266
|
|
|
1275
1267
|
#10 [5/9] COPY *.R .
|
|
1276
1268
|
#10 DONE 0.0s
|
|
@@ -1279,238 +1271,238 @@
|
|
|
1279
1271
|
#11 DONE 0.0s
|
|
1280
1272
|
|
|
1281
1273
|
#12 [7/9] RUN R --no-echo -e "renv::restore(clean = TRUE)"
|
|
1282
|
-
#12 4.
|
|
1283
|
-
#12 4.
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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1301
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|
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#12
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#12
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1371
|
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|
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|
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|
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#12
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|
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#12 30.
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1396
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#12 32.
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#12 32.
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#12 33.
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#12 33.
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#12
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#12
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#12 245.1 - Installing lambda.r ... OK [built from source and cached in 1.5s]
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|
1440
|
+
#12 246.7 - Installing futile.options ... OK [built from source and cached in 1.0s]
|
|
1441
|
+
#12 247.7 - Installing futile.logger ... OK [built from source and cached in 1.4s]
|
|
1442
|
+
#12 249.1 - Installing snow ... OK [built from source and cached in 1.4s]
|
|
1443
|
+
#12 250.5 - Installing cpp11 ... OK [built from source and cached in 1.2s]
|
|
1444
|
+
#12 251.8 - Installing BiocParallel ... OK [built from source and cached in 9.7s]
|
|
1445
|
+
#12 261.5 - Installing matrixStats ... OK [built from source and cached in 12s]
|
|
1446
|
+
#12 273.6 - Installing locfit ... OK [built from source and cached in 9.1s]
|
|
1447
|
+
#12 282.8 - Installing cli ... OK [built from source and cached in 8.2s]
|
|
1448
|
+
#12 291.0 - Installing glue ... OK [built from source and cached in 1.6s]
|
|
1449
|
+
#12 292.6 - Installing rlang ... OK [built from source and cached in 11s]
|
|
1450
|
+
#12 303.2 - Installing lifecycle ... OK [built from source and cached in 1.6s]
|
|
1451
|
+
#12 304.9 - Installing gtable ... OK [built from source and cached in 2.0s]
|
|
1452
|
+
#12 307.0 - Installing isoband ... OK [built from source and cached in 4.4s]
|
|
1453
|
+
#12 311.4 - Installing farver ... OK [built from source and cached in 20s]
|
|
1454
|
+
#12 331.4 - Installing labeling ... OK [built from source and cached in 1.3s]
|
|
1455
|
+
#12 332.8 - Installing colorspace ... OK [built from source and cached in 5.4s]
|
|
1456
|
+
#12 338.1 - Installing munsell ... OK [built from source and cached in 1.4s]
|
|
1457
|
+
#12 339.6 - Installing R6 ... OK [built from source and cached in 1.3s]
|
|
1458
|
+
#12 340.9 - Installing RColorBrewer ... OK [built from source and cached in 1.4s]
|
|
1459
|
+
#12 342.3 - Installing viridisLite ... OK [built from source and cached in 1.0s]
|
|
1460
|
+
#12 343.4 - Installing scales ... OK [built from source and cached in 4.2s]
|
|
1461
|
+
#12 347.6 - Installing fansi ... OK [built from source and cached in 3.9s]
|
|
1462
|
+
#12 351.5 - Installing magrittr ... OK [built from source and cached in 1.3s]
|
|
1463
|
+
#12 352.8 - Installing utf8 ... OK [built from source and cached in 3.3s]
|
|
1464
|
+
#12 356.2 - Installing vctrs ... OK [built from source and cached in 17s]
|
|
1465
|
+
#12 373.0 - Installing pillar ... OK [built from source and cached in 3.7s]
|
|
1466
|
+
#12 376.6 - Installing pkgconfig ... OK [built from source and cached in 1.0s]
|
|
1467
|
+
#12 377.7 - Installing tibble ... OK [built from source and cached in 3.5s]
|
|
1468
|
+
#12 381.2 - Installing withr ... OK [built from source and cached in 1.6s]
|
|
1469
|
+
#12 382.9 - Installing ggplot2 ... OK [built from source and cached in 15s]
|
|
1470
|
+
#12 397.7 - Installing Rcpp ... OK [built from source and cached in 18s]
|
|
1471
|
+
#12 416.0 - Installing MatrixGenerics ... OK [built from source and cached in 2.7s]
|
|
1472
|
+
#12 418.7 - Installing S4Vectors ... OK [built from source and cached in 16s]
|
|
1473
|
+
#12 435.2 - Installing IRanges ... OK [built from source and cached in 41s]
|
|
1474
|
+
#12 476.7 - Installing zlibbioc ... OK [built from source and cached in 1.4s]
|
|
1475
|
+
#12 478.2 - Installing XVector ... OK [built from source and cached in 21s]
|
|
1476
|
+
#12 498.8 - Installing curl ... OK [built from source and cached in 3.7s]
|
|
1477
|
+
#12 502.5 - Installing jsonlite ... OK [built from source and cached in 3.7s]
|
|
1478
|
+
#12 506.2 - Installing mime ... OK [built from source and cached in 1.2s]
|
|
1479
|
+
#12 507.4 - Installing sys ... OK [built from source and cached in 1.3s]
|
|
1480
|
+
#12 508.7 - Installing askpass ... OK [built from source and cached in 1.1s]
|
|
1481
|
+
#12 509.9 - Installing openssl ... OK [built from source and cached in 4.8s]
|
|
1482
|
+
#12 514.7 - Installing httr ... OK [built from source and cached in 3.3s]
|
|
1483
|
+
#12 518.1 - Installing UCSC.utils ... OK [built from source and cached in 3.1s]
|
|
1484
|
+
#12 521.3 - Installing GenomeInfoDbData ... OK [built from source and cached in 0.9s]
|
|
1485
|
+
#12 522.3 - Installing GenomeInfoDb ... OK [built from source and cached in 19s]
|
|
1486
|
+
#12 541.4 - Installing GenomicRanges ... OK [built from source and cached in 25s]
|
|
1487
|
+
#12 566.1 - Installing crayon ... OK [built from source and cached in 1.7s]
|
|
1488
|
+
#12 567.9 - Installing abind ... OK [built from source and cached in 1.3s]
|
|
1489
|
+
#12 569.2 - Installing S4Arrays ... OK [built from source and cached in 30s]
|
|
1490
|
+
#12 599.5 - Installing SparseArray ... OK [built from source and cached in 44s]
|
|
1491
|
+
#12 643.9 - Installing DelayedArray ... OK [built from source and cached in 46s]
|
|
1492
|
+
#12 689.8 - Installing SummarizedExperiment ... OK [built from source and cached in 51s]
|
|
1493
|
+
#12 740.7 - Installing RcppArmadillo ... OK [built from source and cached in 15s]
|
|
1494
|
+
#12 756.0 - Installing DESeq2 ... OK [built from source and cached in 49s]
|
|
1495
|
+
#12 805.0 - Installing plyr ... OK [built from source and cached in 6.3s]
|
|
1496
|
+
#12 811.5 - Installing stringi ... OK [built from source and cached in 55s]
|
|
1497
|
+
#12 866.4 - Installing stringr ... OK [built from source and cached in 2.2s]
|
|
1498
|
+
#12 868.6 - Installing reshape2 ... OK [built from source and cached in 6.5s]
|
|
1499
|
+
#12 875.2
|
|
1500
|
+
#12 875.2 The following loaded package(s) have been updated:
|
|
1501
|
+
#12 875.2 - renv
|
|
1502
|
+
#12 875.2 - BiocManager
|
|
1503
|
+
#12 875.2 Restart your R session to use the new versions.
|
|
1504
|
+
#12 875.2
|
|
1505
|
+
#12 DONE 875.3s
|
|
1514
1506
|
|
|
1515
1507
|
#13 [8/9] RUN echo "#!/bin/bash\nR --no-echo --no-restore -e "renv::restore()"\n"$@"" > /app/run.sh
|
|
1516
1508
|
#13 DONE 0.1s
|
|
@@ -1521,28 +1513,82 @@
|
|
|
1521
1513
|
#15 exporting to image
|
|
1522
1514
|
#15 exporting layers
|
|
1523
1515
|
#15 exporting layers 8.8s done
|
|
1524
|
-
#15 writing image sha256:
|
|
1525
|
-
#15 naming to containers.pl-open.science/milaboratories/pl-containers:local-image.
|
|
1516
|
+
#15 writing image sha256:0510ea5d3b1f65355593b881b0d3cffab1743adf5df223c6d00038d965e709dd done
|
|
1517
|
+
#15 naming to containers.pl-open.science/milaboratories/pl-containers:local-image.cfc351498fe3 done
|
|
1526
1518
|
#15 DONE 8.8s
|
|
1527
|
-
Untagged: containers.pl-open.science/milaboratories/pl-containers:local-image.
|
|
1519
|
+
Untagged: containers.pl-open.science/milaboratories/pl-containers:local-image.cfc351498fe3
|
|
1528
1520
|
[32minfo[39m: Docker image is built:
|
|
1529
|
-
tag: 'containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.run-diff-clonotype-abundance-deseq2-r.software.main.
|
|
1521
|
+
tag: 'containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.run-diff-clonotype-abundance-deseq2-r.software.main.0510ea5d3b1f'
|
|
1530
1522
|
location file: '/home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/software/dist/artifacts/main/docker_x64.json'
|
|
1531
1523
|
[32minfo[39m: Building docker image...
|
|
1532
1524
|
#0 building with "default" instance using docker driver
|
|
1533
1525
|
|
|
1534
|
-
#1 [internal] load build definition from Dockerfile
|
|
1535
|
-
#1 transferring dockerfile:
|
|
1526
|
+
#1 [internal] load build definition from Dockerfile
|
|
1527
|
+
#1 transferring dockerfile: 1.45kB done
|
|
1536
1528
|
#1 DONE 0.0s
|
|
1537
1529
|
|
|
1538
|
-
#2 [
|
|
1539
|
-
#2
|
|
1530
|
+
#2 [auth] library/r-base:pull token for registry-1.docker.io
|
|
1531
|
+
#2 DONE 0.0s
|
|
1540
1532
|
|
|
1541
|
-
#3 [
|
|
1542
|
-
#3 DONE 0.
|
|
1533
|
+
#3 [internal] load metadata for docker.io/library/r-base:4.4.2
|
|
1534
|
+
#3 DONE 0.3s
|
|
1535
|
+
|
|
1536
|
+
#4 [internal] load .dockerignore
|
|
1537
|
+
#4 transferring context: 2B done
|
|
1538
|
+
#4 DONE 0.0s
|
|
1539
|
+
|
|
1540
|
+
#5 [1/9] FROM docker.io/library/r-base:4.4.2@sha256:fe9b29520eeb5292d814b0958783c0ddfcdab37402967a3e67307604354f98d7
|
|
1541
|
+
#5 DONE 0.0s
|
|
1542
|
+
|
|
1543
|
+
#6 [internal] load build context
|
|
1544
|
+
#6 transferring context: 68B done
|
|
1545
|
+
#6 DONE 0.0s
|
|
1546
|
+
|
|
1547
|
+
#7 [3/9] WORKDIR /app
|
|
1548
|
+
#7 CACHED
|
|
1549
|
+
|
|
1550
|
+
#8 [4/9] RUN R -e "install.packages('renv', repos = 'https://cloud.r-project.org')"
|
|
1551
|
+
#8 CACHED
|
|
1552
|
+
|
|
1553
|
+
#9 [7/9] RUN R --no-echo -e "renv::restore(clean = TRUE)"
|
|
1554
|
+
#9 CACHED
|
|
1555
|
+
|
|
1556
|
+
#10 [8/9] RUN echo "#!/bin/bash\nR --no-echo --no-restore -e "renv::restore()"\n"$@"" > /app/run.sh
|
|
1557
|
+
#10 CACHED
|
|
1558
|
+
|
|
1559
|
+
#11 [5/9] COPY *.R .
|
|
1560
|
+
#11 CACHED
|
|
1561
|
+
|
|
1562
|
+
#12 [6/9] COPY ./renv.lock ./renv.lock
|
|
1563
|
+
#12 CACHED
|
|
1564
|
+
|
|
1565
|
+
#13 [2/9] RUN apt-get update && apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev libcairo2-dev libgit2-dev default-libmysqlclient-dev libpq-dev libsasl2-dev libsqlite3-dev libssh2-1-dev unixodbc-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libgsl-dev libbz2-dev liblzma-dev libpcre2-dev && apt-get clean && rm -rf /var/lib/apt/lists/*
|
|
1566
|
+
#13 CACHED
|
|
1567
|
+
|
|
1568
|
+
#14 [9/9] RUN chmod +x /app/run.sh
|
|
1569
|
+
#14 CACHED
|
|
1570
|
+
|
|
1571
|
+
#15 exporting to image
|
|
1572
|
+
#15 exporting layers done
|
|
1573
|
+
#15 writing image sha256:0510ea5d3b1f65355593b881b0d3cffab1743adf5df223c6d00038d965e709dd done
|
|
1574
|
+
#15 naming to containers.pl-open.science/milaboratories/pl-containers:local-image.cfc351498fe3 done
|
|
1575
|
+
#15 DONE 0.0s
|
|
1576
|
+
Untagged: containers.pl-open.science/milaboratories/pl-containers:local-image.cfc351498fe3
|
|
1577
|
+
[32minfo[39m: Docker image is built:
|
|
1578
|
+
tag: 'containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.run-diff-clonotype-abundance-deseq2-r.software.main.0510ea5d3b1f'
|
|
1579
|
+
location file: '/home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/software/dist/artifacts/main/docker_x64.json'
|
|
1580
|
+
[32minfo[39m: Building docker image...
|
|
1581
|
+
#0 building with "default" instance using docker driver
|
|
1543
1582
|
|
|
1544
|
-
#
|
|
1545
|
-
#
|
|
1583
|
+
#1 [internal] load build definition from Dockerfile-prev-checks
|
|
1584
|
+
#1 transferring dockerfile: 543B done
|
|
1585
|
+
#1 DONE 0.0s
|
|
1586
|
+
|
|
1587
|
+
#2 [auth] library/python:pull token for registry-1.docker.io
|
|
1588
|
+
#2 DONE 0.0s
|
|
1589
|
+
|
|
1590
|
+
#3 [internal] load metadata for docker.io/library/python:3.12-slim
|
|
1591
|
+
#3 DONE 0.4s
|
|
1546
1592
|
|
|
1547
1593
|
#4 [internal] load .dockerignore
|
|
1548
1594
|
#4 transferring context: 2B done
|
|
@@ -1552,194 +1598,221 @@ Untagged: containers.pl-open.science/milaboratories/pl-containers:local-image.06
|
|
|
1552
1598
|
#5 transferring context: 4.01kB done
|
|
1553
1599
|
#5 DONE 0.0s
|
|
1554
1600
|
|
|
1555
|
-
#6 [1/
|
|
1556
|
-
#6 resolve docker.io/library/python:3.12
|
|
1557
|
-
#6 sha256:
|
|
1558
|
-
#6 sha256:
|
|
1559
|
-
#6 sha256:
|
|
1560
|
-
#6 sha256:
|
|
1561
|
-
#6 sha256:
|
|
1562
|
-
#6 sha256:
|
|
1563
|
-
#6 sha256:
|
|
1564
|
-
#6 sha256:
|
|
1565
|
-
#6 sha256:
|
|
1566
|
-
#6 sha256:
|
|
1567
|
-
#6 sha256:
|
|
1568
|
-
#6 sha256:
|
|
1569
|
-
#6 sha256:
|
|
1570
|
-
#6 sha256:
|
|
1571
|
-
#6 sha256:
|
|
1572
|
-
#6 sha256:
|
|
1573
|
-
#6 sha256:
|
|
1574
|
-
#6 extracting sha256:
|
|
1575
|
-
#6 sha256:
|
|
1576
|
-
#6 sha256:
|
|
1577
|
-
#6 sha256:
|
|
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|
-
#6 sha256:
|
|
1579
|
-
#6
|
|
1580
|
-
#6 sha256:e1817d4c9557090860f306aded5a2c5efe09d4e3cee68892cdff25229ac7ac38 0B / 25.64MB 0.7s
|
|
1581
|
-
#6 sha256:79b2f47ad4443652b9b5cc81a95ede249fd976310efdbee159f29638783778c0 50.33MB / 64.40MB 0.8s
|
|
1582
|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 33.55MB / 211.36MB 0.8s
|
|
1583
|
-
#6 sha256:79b2f47ad4443652b9b5cc81a95ede249fd976310efdbee159f29638783778c0 61.87MB / 64.40MB 0.9s
|
|
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|
-
#6 sha256:e1817d4c9557090860f306aded5a2c5efe09d4e3cee68892cdff25229ac7ac38 19.92MB / 25.64MB 0.9s
|
|
1585
|
-
#6 sha256:79b2f47ad4443652b9b5cc81a95ede249fd976310efdbee159f29638783778c0 64.40MB / 64.40MB 0.9s done
|
|
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|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 61.87MB / 211.36MB 1.1s
|
|
1587
|
-
#6 sha256:e1817d4c9557090860f306aded5a2c5efe09d4e3cee68892cdff25229ac7ac38 25.64MB / 25.64MB 1.0s done
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|
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|
-
#6 sha256:1290187bfbf4dc7435a33f7a03f4cec4ba186242e9f7599bae884bb332030928 0B / 249B 1.1s
|
|
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|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 74.45MB / 211.36MB 1.2s
|
|
1590
|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 92.27MB / 211.36MB 1.4s
|
|
1591
|
-
#6 sha256:1290187bfbf4dc7435a33f7a03f4cec4ba186242e9f7599bae884bb332030928 249B / 249B 1.3s done
|
|
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|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 103.81MB / 211.36MB 1.5s
|
|
1593
|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 124.78MB / 211.36MB 1.7s
|
|
1594
|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 154.14MB / 211.36MB 1.9s
|
|
1595
|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 176.16MB / 211.36MB 2.1s
|
|
1596
|
-
#6 extracting sha256:3e6b9d1a95114e19f12262a4e8a59ad1d1a10ca7b82108adcf0605a200294964 1.8s done
|
|
1597
|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 211.36MB / 211.36MB 2.4s
|
|
1598
|
-
#6 extracting sha256:37927ed901b1b2608b72796c6881bf645480268eca4ac9a37b9219e050bb4d84
|
|
1599
|
-
#6 sha256:e23f099911d692f62b851cf49a1e93294288a115f5cd2d014180e4d3684d34ab 211.36MB / 211.36MB 2.6s done
|
|
1600
|
-
#6 extracting sha256:37927ed901b1b2608b72796c6881bf645480268eca4ac9a37b9219e050bb4d84 0.7s done
|
|
1601
|
-
#6 extracting sha256:79b2f47ad4443652b9b5cc81a95ede249fd976310efdbee159f29638783778c0
|
|
1602
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#6 extracting sha256:d2717412051f07b2b9dae4e776d1d34f19b63c47c39d30996341c1bc31a5d417 0.2s done
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#6 extracting sha256:1290187bfbf4dc7435a33f7a03f4cec4ba186242e9f7599bae884bb332030928
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#6 extracting sha256:1290187bfbf4dc7435a33f7a03f4cec4ba186242e9f7599bae884bb332030928 done
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#6 resolve docker.io/library/python:3.12-slim@sha256:dc9e92fcdc085ad86dda976f4cfc58856dba33a438a16db37ff00151b285c8ca done
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#6 extracting sha256:2d939f7b801c4b30dd7e958d99d18e61c6ebbcab6a254abcbcfbd2678d780bfd 0.1s
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#6 extracting sha256:1dd1df8954c91ccf128b1b667f07b2317759315a368ec7f106a2a803bc71802d
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#6 extracting sha256:1dd1df8954c91ccf128b1b667f07b2317759315a368ec7f106a2a803bc71802d 0.5s done
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#6 extracting sha256:61aaec5bfd48bb70aea7705aa27ecaba298d628393bce46603723a8a12d62c51
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#6 extracting sha256:61aaec5bfd48bb70aea7705aa27ecaba298d628393bce46603723a8a12d62c51 done
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#8 1.469 Downloading wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
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#8 1.593 Downloading pip-25.2-py3-none-any.whl (1.8 MB)
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#8 1.613 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 123.8 MB/s eta 0:00:00
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#8 1.622 Downloading setuptools-80.9.0-py3-none-any.whl (1.2 MB)
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#8 1.632 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 116.3 MB/s eta 0:00:00
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#8 1.658 Installing collected packages: wheel, setuptools, pip
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#8 2.388 Attempting uninstall: pip
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#8 2.391 Found existing installation: pip 25.0.1
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#8 2.434 Uninstalling pip-25.0.1:
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#8 2.444 Successfully uninstalled pip-25.0.1
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#8 3.242 Successfully installed pip-25.2 setuptools-80.9.0 wheel-0.45.1
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#8 3.242 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning.
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#8 DONE 3.4s
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#9 1.695 Collecting patsy==1.0.1 (from -r requirements.txt (line 2))
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#9 1.698 Downloading patsy-1.0.1-py2.py3-none-any.whl.metadata (3.3 kB)
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#9 1.840 Collecting numpy===2.2.6 (from -r requirements.txt (line 3))
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#9 1.845 Downloading numpy-2.2.6-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB)
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#9 1.867 Collecting python-dateutil>=2.8.2 (from pandas==2.2.3->-r requirements.txt (line 1))
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#9 1.870 Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
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#9 1.900 Collecting pytz>=2020.1 (from pandas==2.2.3->-r requirements.txt (line 1))
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#9 1.903 Downloading pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
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#9 1.913 Collecting tzdata>=2022.7 (from pandas==2.2.3->-r requirements.txt (line 1))
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#9 1.916 Downloading tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
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#9 1.938 Downloading pandas-2.2.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.7 MB)
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#9 2.023 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.7/12.7 MB 152.1 MB/s eta 0:00:00
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#9 2.027 Downloading patsy-1.0.1-py2.py3-none-any.whl (232 kB)
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#9 2.030 Downloading numpy-2.2.6-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.5 MB)
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#9 2.097 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.5/16.5 MB 249.2 MB/s eta 0:00:00
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#9 2.100 Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
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#9 2.103 Downloading pytz-2025.2-py2.py3-none-any.whl (509 kB)
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#9 2.112 Downloading six-1.17.0-py2.py3-none-any.whl (11 kB)
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#9 2.208 Installing collected packages: pytz, tzdata, six, numpy, python-dateutil, patsy, pandas
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#9 8.537 Successfully installed numpy-2.2.6 pandas-2.2.3 patsy-1.0.1 python-dateutil-2.9.0.post0 pytz-2025.2 six-1.17.0 tzdata-2025.2
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#9 8.537 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning.
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#9 8.629 [notice] A new release of pip is available: 25.0.1 -> 25.2
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#9 8.629 [notice] To update, run: pip install --upgrade pip
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#9 DONE 8.7s
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#9 [4/6] COPY requirements.txt .
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#9 DONE 0.0s
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#10 [5/
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#10 [5/6] RUN pip install --no-cache-dir -r requirements.txt
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#10 0.542 Collecting pandas==2.2.3 (from -r requirements.txt (line 1))
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#10 0.565 Downloading pandas-2.2.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
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#10 0.616 Collecting patsy==1.0.1 (from -r requirements.txt (line 2))
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#10 0.619 Downloading patsy-1.0.1-py2.py3-none-any.whl.metadata (3.3 kB)
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#10 0.802 Collecting numpy===2.2.6 (from -r requirements.txt (line 3))
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#10 0.806 Downloading numpy-2.2.6-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB)
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#10 0.831 Collecting python-dateutil>=2.8.2 (from pandas==2.2.3->-r requirements.txt (line 1))
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#10 0.834 Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
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#10 0.870 Collecting pytz>=2020.1 (from pandas==2.2.3->-r requirements.txt (line 1))
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#10 0.873 Downloading pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
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#10 0.885 Collecting tzdata>=2022.7 (from pandas==2.2.3->-r requirements.txt (line 1))
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#10 0.888 Downloading tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
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#10 0.906 Collecting six>=1.5 (from python-dateutil>=2.8.2->pandas==2.2.3->-r requirements.txt (line 1))
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#10 0.910 Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
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#10 0.916 Downloading pandas-2.2.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.7 MB)
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#10 0.953 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.7/12.7 MB 378.2 MB/s 0:00:00
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#10 0.957 Downloading patsy-1.0.1-py2.py3-none-any.whl (232 kB)
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#10 0.961 Downloading numpy-2.2.6-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.5 MB)
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#10 1.003 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.5/16.5 MB 414.1 MB/s 0:00:00
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#10 1.008 Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
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#10 1.012 Downloading pytz-2025.2-py2.py3-none-any.whl (509 kB)
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#10 1.016 Downloading six-1.17.0-py2.py3-none-any.whl (11 kB)
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#10 1.020 Downloading tzdata-2025.2-py2.py3-none-any.whl (347 kB)
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#10 1.119 Installing collected packages: pytz, tzdata, six, numpy, python-dateutil, patsy, pandas
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#10 7.246
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#10 7.248 Successfully installed numpy-2.2.6 pandas-2.2.3 patsy-1.0.1 python-dateutil-2.9.0.post0 pytz-2025.2 six-1.17.0 tzdata-2025.2
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#10 7.248 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning.
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#10 DONE 7.4s
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#11 [6/6] COPY . /app/
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#11 DONE 0.0s
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#12 exporting to image
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#12 exporting layers
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#12 exporting layers 1.3s done
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#12 writing image sha256:6671451070b0b1cb74a4342e3e48db94df711749b298fec9aa4e06622acdb8c5 done
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#12 naming to containers.pl-open.science/milaboratories/pl-containers:local-image.637f874b7b60 done
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#12 DONE 1.3s
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Untagged: containers.pl-open.science/milaboratories/pl-containers:local-image.637f874b7b60
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[32minfo[39m: Docker image is built:
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tag: 'containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.run-diff-clonotype-abundance-deseq2-r.software.prev-checks.6671451070b0'
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[32minfo[39m: Building docker image...
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#0 building with "default" instance using docker driver
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#1 [internal] load build definition from Dockerfile-prev-checks
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#1 transferring dockerfile: 543B done
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#1 DONE 0.0s
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#2 [internal] load metadata for docker.io/library/python:3.12-slim
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#2 DONE 0.1s
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#3 [internal] load .dockerignore
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#4 [1/6] FROM docker.io/library/python:3.12-slim@sha256:dc9e92fcdc085ad86dda976f4cfc58856dba33a438a16db37ff00151b285c8ca
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#4 DONE 0.0s
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#5 [internal] load build context
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