@platforma-open/milaboratories.run-diff-clonotype-abundance-deseq2-r.software 1.11.0 → 1.11.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1450 -1456
- package/CHANGELOG.md +6 -0
- package/dist/artifacts/main/archive.json +1 -1
- package/dist/artifacts/main/docker_x64.json +1 -1
- package/dist/tengo/software/main.sw.json +1 -1
- package/package.json +1 -1
- package/pkg-platforma-open-milaboratories.run-diff-clonotype-abundance-deseq2-r.software-main-1.11.1.tgz +0 -0
- package/pkg-platforma-open-milaboratories.run-diff-clonotype-abundance-deseq2-r.software-main-1.11.0.tgz +0 -0
package/.turbo/turbo-build.log
CHANGED
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.run-diff-clonotype-abundance-deseq2-r.software@1.11.
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> @platforma-open/milaboratories.run-diff-clonotype-abundance-deseq2-r.software@1.11.1 build /home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/software
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[32minfo[39m: Building docker image...
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#7 4.131 libkdb5-10t64 libkrb5-3 libkrb5-dev libkrb5support0 liblastlog2-2
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#7 4.131 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib librtmp-dev
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#7 4.132 libsqlite3-0 libssl3t64 libsysprof-capture-4-dev libtasn1-6-dev libtiff-dev
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#7 4.132 libtiff6 libtiffxx6 libunbound8 libuuid1 libwebp-dev libwebpdecoder3
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#7 4.132 libxml2-16 libxrender-dev libxrender1 libzstd-dev libzstd1 locales login
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#7 4.132 uuid-dev x11proto-dev xorg-sgml-doctools xtrans-dev xz-utils
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#7 4.133 doc-base krb5-doc libcairo2-doc libcurl4-doc libidn-dev freetype2-doc
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#7 4.133 libglib2.0-doc libgdk-pixbuf2.0-bin libxml2-utils gmp-doc libgmp10-doc
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#7 4.133 libmpfr-dev dns-root-data gnutls-bin gnutls-doc libgraphite2-utils
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#7 4.133 gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-user
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#7 4.133 libice-doc libmbedtls-doc libnghttp2-doc odbc-postgresql tdsodbc p11-kit-doc
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#7 4.133 postgresql-doc-17 libsm-doc sqlite3-doc libssl-doc libx11-doc libxcb-doc
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#7 4.133 libxext-doc python3-doc python3-tk python3-venv python3.13-venv
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#7 4.133 python3.13-doc binfmt-support
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#7 4.133 Recommended packages:
|
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#7 4.133 libtasn1-doc
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#7 6.064 comerr-dev default-libmysqlclient-dev gir1.2-freedesktop
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#7 6.064 gir1.2-freedesktop-dev gir1.2-glib-2.0 gir1.2-glib-2.0-dev
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#7 6.064 gir1.2-harfbuzz-0.0 girepository-tools krb5-multidev libblkid-dev
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#7 6.064 libbrotli-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2-dev
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#7 6.065 libcurl4-openssl-dev libelf1t64 libevent-2.1-7t64 libexpat1-dev libffi-dev
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#7 6.065 libfontconfig-dev libfreetype-dev libfribidi-dev libgio-2.0-dev
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#7 6.065 libgio-2.0-dev-bin libgirepository-2.0-0 libgit2-1.9 libgit2-dev
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#7 6.065 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgmp-dev
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#7 6.065 libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev
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#7 6.065 libgraphite2-dev libgsl-dev libgsl28 libgslcblas0 libgssrpc4t64
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#7 6.065 libharfbuzz-cairo0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0
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#7 6.065 libharfbuzz-subset0 libhttp-parser-dev libhttp-parser2.9 libice-dev libicu76
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#7 6.065 libidn2-dev libjbig-dev libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64
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#7 6.065 libkrb5-dev liblastlog2-2 libldap-dev liblerc-dev libltdl7 liblzo2-2
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#7 6.065 libmariadb-dev libmariadb-dev-compat libmariadb3 libmbedcrypto16
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#7 6.065 libmbedtls-dev libmbedtls21 libmbedx509-7 libmount-dev libnghttp2-dev
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153
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#7 6.065 libnghttp3-dev libodbc2 libodbccr2 libodbcinst2 libp11-kit-dev
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154
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#7 6.065 libpixman-1-dev libpq-dev libpq5 libpsl-dev libpython3-stdlib
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#7 6.065 libpython3.13-minimal libpython3.13-stdlib librtmp-dev libsasl2-dev
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156
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#7 6.065 libselinux1-dev libsepol-dev libsharpyuv-dev libsm-dev libsqlite3-0
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157
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#7 6.065 libsqlite3-dev libssh2-1-dev libssl-dev libsysprof-capture-4-dev
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#7 6.065 libtasn1-6-dev libtiff-dev libtiff5-dev libtiffxx6 libunbound8 libwebp-dev
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#7 6.066 libwebpdecoder3 libwebpdemux2 libwebpmux3 libx11-dev libxau-dev
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#7 6.066 libxcb-render0-dev libxcb-shm0-dev libxcb1-dev libxdmcp-dev libxext-dev
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161
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#7 6.066 libxml2-16 libxml2-dev libxrender-dev libzstd-dev mariadb-common media-types
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162
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#7 6.066 mysql-common native-architecture netbase nettle-dev python3 python3-minimal
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163
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#7 6.066 python3-packaging python3.13 python3.13-minimal unixodbc-common unixodbc-dev
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164
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#7 6.066 uuid-dev x11proto-dev xorg-sgml-doctools xtrans-dev
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165
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#7 6.067 The following packages will be upgraded:
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166
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#7 6.067 bsdutils fontconfig fontconfig-config icu-devtools libblkid1 libbrotli1
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167
|
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#7 6.067 libc-bin libc-dev-bin libc-l10n libc6 libc6-dev libcairo2 libcom-err2
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168
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#7 6.067 libcurl4t64 libexpat1 libffi8 libfontconfig1 libglib2.0-0t64 libgmp10
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169
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#7 6.067 libgnutls30t64 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed6t64
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#7 6.067 libicu-dev libidn2-0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
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#7 6.067 libk5crypto3 libkrb5-3 libkrb5support0 libldap2 liblzma-dev liblzma5
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#7 6.068 libmount1 libnettle8t64 libnghttp2-14 libnghttp3-9 libpcre2-16-0
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#7 6.068 libpcre2-32-0 libpcre2-8-0 libpcre2-dev libpcre2-posix3 libpng-dev
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#7 6.068 libpng16-16t64 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsepol2
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#7 6.068 libsm6 libsmartcols1 libssl3t64 libtiff6 libuuid1 libx11-6 libx11-data
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#7 6.068 libxrender1 libzstd1 locales login mount openssl openssl-provider-legacy
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#7 6.068 util-linux xz-utils
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#7 6.112 67 upgraded, 130 newly installed, 0 to remove and 143 not upgraded.
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#7 6.112 Need to get 94.1 MB of archives.
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#7 6.112 After this operation, 215 MB of additional disk space will be used.
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+
#7 6.112 Get:1 http://deb.debian.org/debian testing/main amd64 libexpat1 amd64 2.7.1-2 [108 kB]
|
|
182
|
+
#7 6.126 Get:3 http://deb.debian.org/debian testing/main amd64 libgraphite2-3 amd64 1.3.14-3 [75.1 kB]
|
|
183
|
+
#7 6.128 Get:4 http://deb.debian.org/debian testing/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB]
|
|
184
|
+
#7 6.133 Get:5 http://deb.debian.org/debian testing/main amd64 libsysprof-capture-4-dev amd64 49~rc-1 [53.3 kB]
|
|
185
|
+
#7 6.134 Get:6 http://deb.debian.org/debian testing/main amd64 libgnutls30t64 amd64 3.8.9-3 [1,465 kB]
|
|
186
|
+
#7 6.148 Get:7 http://deb.debian.org/debian testing/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB]
|
|
187
|
+
#7 6.150 Get:8 http://deb.debian.org/debian testing/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB]
|
|
188
|
+
#7 6.153 Get:9 http://deb.debian.org/debian testing/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB]
|
|
189
|
+
#7 6.155 Get:10 http://deb.debian.org/debian testing/main amd64 libgnutls28-dev amd64 3.8.9-3 [1,406 kB]
|
|
190
|
+
#7 6.161 Get:11 http://deb.debian.org/debian testing/main amd64 libcurl4-openssl-dev amd64 8.15.0-1 [511 kB]
|
|
191
|
+
#7 6.163 Get:12 http://deb.debian.org/debian testing/main amd64 libgraphite2-dev amd64 1.3.14-3 [20.3 kB]
|
|
192
|
+
#7 6.164 Get:2 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.1-3 [117 kB]
|
|
193
|
+
#7 6.173 Get:13 http://deb.debian.org/debian sid/main amd64 libc-l10n all 2.41-12 [739 kB]
|
|
194
|
+
#7 6.226 Get:14 http://deb.debian.org/debian sid/main amd64 locales all 2.41-12 [3,924 kB]
|
|
195
|
+
#7 6.251 Get:15 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB]
|
|
196
|
+
#7 6.258 Get:16 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-12 [1,991 kB]
|
|
197
|
+
#7 6.281 Get:17 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.41-12 [2,846 kB]
|
|
198
|
+
#7 6.537 Get:18 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.41-12 [637 kB]
|
|
199
|
+
#7 6.549 Get:19 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB]
|
|
200
|
+
#7 6.594 Get:20 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.1-3 [29.3 kB]
|
|
201
|
+
#7 6.621 Get:21 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.1-3 [38.9 kB]
|
|
202
|
+
#7 6.647 Get:22 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.1-3 [188 kB]
|
|
203
|
+
#7 6.659 Get:23 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.1-3 [229 kB]
|
|
204
|
+
#7 6.673 Get:24 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.1-3 [157 kB]
|
|
205
|
+
#7 6.698 Get:25 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.1-3 [1,306 kB]
|
|
206
|
+
#7 6.711 Get:26 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.1-3 [172 kB]
|
|
207
|
+
#7 6.737 Get:27 http://deb.debian.org/debian sid/main amd64 libpcre2-dev amd64 10.46-1 [853 kB]
|
|
208
|
+
#7 6.763 Get:28 http://deb.debian.org/debian sid/main amd64 libpcre2-16-0 amd64 10.46-1 [281 kB]
|
|
209
|
+
#7 6.776 Get:29 http://deb.debian.org/debian sid/main amd64 libpcre2-32-0 amd64 10.46-1 [268 kB]
|
|
210
|
+
#7 6.795 Get:30 http://deb.debian.org/debian sid/main amd64 libpcre2-posix3 amd64 10.46-1 [63.9 kB]
|
|
211
|
+
#7 6.841 Get:31 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB]
|
|
212
|
+
#7 6.852 Get:32 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB]
|
|
213
|
+
#7 6.864 Get:33 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.1-3 [119 kB]
|
|
214
|
+
#7 6.875 Get:34 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.2-1 [307 kB]
|
|
215
|
+
#7 6.889 Get:35 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.7+dfsg-1.1 [320 kB]
|
|
216
|
+
#7 6.901 Get:36 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.2-1 [2,438 kB]
|
|
217
|
+
#7 6.921 Get:37 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB]
|
|
218
|
+
#7 6.931 Get:38 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.7-1 [2,216 kB]
|
|
219
|
+
#7 6.949 Get:39 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB]
|
|
220
|
+
#7 6.956 Get:40 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB]
|
|
221
|
+
#7 6.981 Get:41 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB]
|
|
222
|
+
#7 6.999 Get:42 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB]
|
|
223
|
+
#7 7.012 Get:43 http://deb.debian.org/debian sid/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB]
|
|
224
|
+
#7 7.027 Get:44 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.8.1-1.1 [316 kB]
|
|
225
|
+
#7 7.077 Get:45 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1,960 kB]
|
|
226
|
+
#7 7.093 Get:46 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.7-1 [761 kB]
|
|
227
|
+
#7 7.121 Get:47 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB]
|
|
228
|
+
#7 7.174 Get:48 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.7-1 [28.3 kB]
|
|
229
|
+
#7 7.183 Get:49 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB]
|
|
230
|
+
#7 7.197 Get:50 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB]
|
|
231
|
+
#7 7.209 Get:51 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB]
|
|
232
|
+
#7 7.224 Get:52 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.1-1.1 [663 kB]
|
|
233
|
+
#7 7.235 Get:53 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB]
|
|
234
|
+
#7 7.249 Get:54 http://deb.debian.org/debian sid/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB]
|
|
235
|
+
#7 7.290 Get:55 http://deb.debian.org/debian sid/main amd64 mysql-common all 5.8+1.1.1 [6,784 B]
|
|
236
|
+
#7 7.305 Get:56 http://deb.debian.org/debian sid/main amd64 mariadb-common all 1:11.8.3-1 [28.8 kB]
|
|
237
|
+
#7 7.317 Get:57 http://deb.debian.org/debian sid/main amd64 libmariadb3 amd64 1:11.8.3-1+b1 [188 kB]
|
|
238
|
+
#7 7.336 Get:58 http://deb.debian.org/debian sid/main amd64 libssl-dev amd64 3.5.2-1 [2,957 kB]
|
|
239
|
+
#7 7.356 Get:59 http://deb.debian.org/debian sid/main amd64 libmariadb-dev amd64 1:11.8.3-1+b1 [277 kB]
|
|
240
|
+
#7 7.586 Get:60 http://deb.debian.org/debian sid/main amd64 libmariadb-dev-compat amd64 1:11.8.3-1+b1 [27.9 kB]
|
|
241
|
+
#7 7.602 Get:61 http://deb.debian.org/debian sid/main amd64 default-libmysqlclient-dev amd64 1.1.1 [3,252 B]
|
|
242
|
+
#7 7.616 Get:62 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB]
|
|
243
|
+
#7 7.645 Get:63 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB]
|
|
244
|
+
#7 7.659 Get:64 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB]
|
|
245
|
+
#7 7.674 Get:65 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1,518 kB]
|
|
246
|
+
#7 7.686 Get:66 http://deb.debian.org/debian sid/main amd64 gir1.2-glib-2.0 amd64 2.84.4-3 [198 kB]
|
|
247
|
+
#7 7.698 Get:67 http://deb.debian.org/debian sid/main amd64 libpng-dev amd64 1.6.50-1 [366 kB]
|
|
248
|
+
#7 7.711 Get:68 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB]
|
|
249
|
+
#7 7.722 Get:69 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
|
|
250
|
+
#7 7.739 Get:70 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB]
|
|
251
|
+
#7 7.867 Get:71 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB]
|
|
252
|
+
#7 7.879 Get:72 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB]
|
|
253
|
+
#7 7.891 Get:73 http://deb.debian.org/debian sid/main amd64 libcairo-gobject2 amd64 1.18.4-1+b1 [130 kB]
|
|
254
|
+
#7 7.905 Get:74 http://deb.debian.org/debian sid/main amd64 gir1.2-freedesktop amd64 1.84.0-1 [60.5 kB]
|
|
255
|
+
#7 7.919 Get:75 http://deb.debian.org/debian sid/main amd64 gir1.2-glib-2.0-dev amd64 2.84.4-3 [916 kB]
|
|
256
|
+
#7 7.930 Get:76 http://deb.debian.org/debian sid/main amd64 gir1.2-freedesktop-dev amd64 1.84.0-1 [51.6 kB]
|
|
257
|
+
#7 7.947 Get:77 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 11.4.5-1 [505 kB]
|
|
258
|
+
#7 7.960 Get:78 http://deb.debian.org/debian sid/main amd64 libharfbuzz-gobject0 amd64 11.4.5-1 [31.6 kB]
|
|
259
|
+
#7 7.974 Get:79 http://deb.debian.org/debian sid/main amd64 gir1.2-harfbuzz-0.0 amd64 11.4.5-1 [41.5 kB]
|
|
260
|
+
#7 7.984 Get:80 http://deb.debian.org/debian sid/main amd64 native-architecture all 0.2.6 [2,264 B]
|
|
261
|
+
#7 7.997 Get:81 http://deb.debian.org/debian sid/main amd64 libgirepository-2.0-0 amd64 2.84.4-3 [143 kB]
|
|
262
|
+
#7 8.010 Get:82 http://deb.debian.org/debian sid/main amd64 girepository-tools amd64 2.84.4-3 [150 kB]
|
|
263
|
+
#7 8.026 Get:83 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-4 [9,722 kB]
|
|
264
|
+
#7 8.071 Get:84 http://deb.debian.org/debian sid/main amd64 libicu-dev amd64 76.1-4 [10.8 MB]
|
|
265
|
+
#7 8.122 Get:85 http://deb.debian.org/debian sid/main amd64 icu-devtools amd64 76.1-4 [215 kB]
|
|
266
|
+
#7 8.123 Get:86 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
|
|
267
|
+
#7 8.129 Get:87 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
|
|
268
|
+
#7 8.131 Get:88 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
|
|
269
|
+
#7 8.131 Get:89 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
|
|
270
|
+
#7 8.132 Get:90 http://deb.debian.org/debian sid/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB]
|
|
271
|
+
#7 8.137 Get:91 http://deb.debian.org/debian sid/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB]
|
|
272
|
+
#7 8.145 Get:92 http://deb.debian.org/debian sid/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB]
|
|
273
|
+
#7 8.158 Get:93 http://deb.debian.org/debian sid/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB]
|
|
274
|
+
#7 8.171 Get:94 http://deb.debian.org/debian sid/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB]
|
|
275
|
+
#7 8.184 Get:95 http://deb.debian.org/debian sid/main amd64 uuid-dev amd64 2.41.1-3 [50.4 kB]
|
|
276
|
+
#7 8.310 Get:96 http://deb.debian.org/debian sid/main amd64 libblkid-dev amd64 2.41.1-3 [230 kB]
|
|
277
|
+
#7 8.328 Get:97 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
|
|
278
|
+
#7 8.342 Get:98 http://deb.debian.org/debian sid/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB]
|
|
279
|
+
#7 8.353 Get:99 http://deb.debian.org/debian sid/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB]
|
|
280
|
+
#7 8.365 Get:100 http://deb.debian.org/debian sid/main amd64 libcairo-script-interpreter2 amd64 1.18.4-1+b1 [59.3 kB]
|
|
281
|
+
#7 8.382 Get:101 http://deb.debian.org/debian sid/main amd64 libfreetype-dev amd64 2.13.3+dfsg-1 [622 kB]
|
|
282
|
+
#7 8.506 Get:102 http://deb.debian.org/debian sid/main amd64 libfontconfig-dev amd64 2.15.0-2.4 [426 kB]
|
|
283
|
+
#7 8.509 Get:103 http://deb.debian.org/debian sid/main amd64 libffi-dev amd64 3.5.2-2 [63.7 kB]
|
|
284
|
+
#7 8.511 Get:104 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.8.1-1 [296 kB]
|
|
285
|
+
#7 8.513 Get:105 http://deb.debian.org/debian sid/main amd64 libsepol-dev amd64 3.8.1-1 [373 kB]
|
|
286
|
+
#7 8.515 Get:106 http://deb.debian.org/debian sid/main amd64 libselinux1-dev amd64 3.8.1-1 [169 kB]
|
|
287
|
+
#7 8.518 Get:107 http://deb.debian.org/debian sid/main amd64 libmount-dev amd64 2.41.1-3 [30.8 kB]
|
|
288
|
+
#7 8.520 Get:108 http://deb.debian.org/debian sid/main amd64 libgio-2.0-dev amd64 2.84.4-3 [1,688 kB]
|
|
289
|
+
#7 8.529 Get:109 http://deb.debian.org/debian sid/main amd64 libglib2.0-data all 2.84.4-3 [1,286 kB]
|
|
290
|
+
#7 8.534 Get:110 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.193-3 [192 kB]
|
|
291
|
+
#7 8.535 Get:111 http://deb.debian.org/debian sid/main amd64 libglib2.0-bin amd64 2.84.4-3 [130 kB]
|
|
292
|
+
#7 8.536 Get:112 http://deb.debian.org/debian sid/main amd64 python3-packaging all 25.0-1 [56.6 kB]
|
|
293
|
+
#7 8.541 Get:113 http://deb.debian.org/debian sid/main amd64 libgio-2.0-dev-bin amd64 2.84.4-3 [166 kB]
|
|
294
|
+
#7 8.549 Get:114 http://deb.debian.org/debian sid/main amd64 libglib2.0-dev-bin amd64 2.84.4-3 [54.7 kB]
|
|
295
|
+
#7 8.567 Get:115 http://deb.debian.org/debian sid/main amd64 libglib2.0-dev amd64 2.84.4-3 [55.5 kB]
|
|
296
|
+
#7 8.573 Get:116 http://deb.debian.org/debian sid/main amd64 libpixman-1-dev amd64 0.44.0-3 [11.4 kB]
|
|
297
|
+
#7 8.586 Get:117 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB]
|
|
298
|
+
#7 8.598 Get:118 http://deb.debian.org/debian sid/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
|
|
299
|
+
#7 8.613 Get:119 http://deb.debian.org/debian sid/main amd64 x11proto-dev all 2024.1-1 [603 kB]
|
|
300
|
+
#7 8.625 Get:120 http://deb.debian.org/debian sid/main amd64 libice-dev amd64 2:1.1.1-1 [73.8 kB]
|
|
301
|
+
#7 8.638 Get:121 http://deb.debian.org/debian sid/main amd64 libsm-dev amd64 2:1.2.6-1 [39.7 kB]
|
|
302
|
+
#7 8.650 Get:122 http://deb.debian.org/debian sid/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB]
|
|
303
|
+
#7 8.663 Get:123 http://deb.debian.org/debian sid/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB]
|
|
304
|
+
#7 8.676 Get:124 http://deb.debian.org/debian sid/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB]
|
|
305
|
+
#7 8.689 Get:125 http://deb.debian.org/debian sid/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB]
|
|
306
|
+
#7 8.702 Get:126 http://deb.debian.org/debian sid/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB]
|
|
307
|
+
#7 8.713 Get:127 http://deb.debian.org/debian sid/main amd64 libxcb-render0-dev amd64 1.17.0-2+b1 [118 kB]
|
|
308
|
+
#7 8.730 Get:128 http://deb.debian.org/debian sid/main amd64 libxcb-shm0-dev amd64 1.17.0-2+b1 [108 kB]
|
|
309
|
+
#7 8.742 Get:129 http://deb.debian.org/debian sid/main amd64 libxext-dev amd64 2:1.3.4-1+b3 [104 kB]
|
|
310
|
+
#7 8.768 Get:130 http://deb.debian.org/debian sid/main amd64 libxrender-dev amd64 1:0.9.12-1 [39.0 kB]
|
|
311
|
+
#7 8.781 Get:131 http://deb.debian.org/debian sid/main amd64 libcairo2-dev amd64 1.18.4-1+b1 [43.4 kB]
|
|
312
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#7 9.029 Get:147 http://deb.debian.org/debian sid/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB]
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#7 9.068 Get:150 http://deb.debian.org/debian sid/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB]
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#7 9.095 Get:152 http://deb.debian.org/debian sid/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB]
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#7 9.521 Get:183 http://deb.debian.org/debian sid/main amd64 libsasl2-dev amd64 2.1.28+dfsg1-9 [234 kB]
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#7 24.72 update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
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#7 24.83 debconf: (This frontend requires a controlling tty.)
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#7 24.97 debconf: falling back to frontend: Readline
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#7 24.97 debconf: falling back to frontend: Teletype
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+
#7 25.40 Generating locales (this might take a while)...
|
|
1011
|
+
#7 25.40 en_US.UTF-8... done
|
|
1012
|
+
#7 26.57 Generation complete.
|
|
1013
|
+
#7 26.58 Setting up libpcre2-16-0:amd64 (10.46-1) ...
|
|
1014
|
+
#7 26.59 Setting up libelf1t64:amd64 (0.193-3) ...
|
|
1015
|
+
#7 26.59 Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ...
|
|
1016
|
+
#7 26.60 Setting up libkrb5support0:amd64 (1.21.3-5) ...
|
|
1017
|
+
#7 26.60 Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
|
|
1018
|
+
#7 26.60 Setting up libsysprof-capture-4-dev:amd64 (49~rc-1) ...
|
|
1019
|
+
#7 26.61 Setting up mariadb-common (1:11.8.3-1) ...
|
|
1020
|
+
#7 26.61 update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode
|
|
1021
|
+
#7 26.62 Setting up xtrans-dev (1.4.0-1) ...
|
|
1022
|
+
#7 26.62 Setting up libgraphite2-dev:amd64 (1.3.14-3) ...
|
|
1023
|
+
#7 26.62 Setting up libpcre2-32-0:amd64 (10.46-1) ...
|
|
1024
|
+
#7 26.63 Setting up libglib2.0-data (2.84.4-3) ...
|
|
1025
|
+
#7 26.63 Setting up libunbound8:amd64 (1.23.1-1) ...
|
|
1026
|
+
#7 26.64 Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ...
|
|
1027
|
+
#7 26.64 Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ...
|
|
1028
|
+
#7 26.65 Setting up libx11-data (2:1.8.12-1) ...
|
|
1029
|
+
#7 26.65 Setting up xz-utils (5.8.1-1.1) ...
|
|
1030
|
+
#7 26.66 Setting up libssl-dev:amd64 (3.5.2-1) ...
|
|
1031
|
+
#7 26.67 Setting up libpng16-16t64:amd64 (1.6.50-1) ...
|
|
1032
|
+
#7 26.67 Setting up libmariadb3:amd64 (1:11.8.3-1+b1) ...
|
|
1033
|
+
#7 26.68 Setting up unixodbc-common (2.3.12-2) ...
|
|
1034
|
+
#7 26.68 Setting up libsepol2:amd64 (3.8.1-1) ...
|
|
1035
|
+
#7 26.69 Setting up libsepol-dev:amd64 (3.8.1-1) ...
|
|
1036
|
+
#7 26.69 Setting up liblerc-dev:amd64 (4.0.0+ds-5) ...
|
|
1037
|
+
#7 26.70 Setting up libk5crypto3:amd64 (1.21.3-5) ...
|
|
1038
|
+
#7 26.71 Setting up libssh2-1-dev:amd64 (1.11.1-1) ...
|
|
1039
|
+
#7 26.71 Setting up libltdl7:amd64 (2.5.4-5) ...
|
|
1040
|
+
#7 26.72 Setting up libidn2-dev:amd64 (2.3.8-4) ...
|
|
1041
|
+
#7 26.72 Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
|
|
1042
|
+
#7 26.72 Setting up libnghttp3-9:amd64 (1.11.0-1) ...
|
|
1043
|
+
#7 26.73 Setting up libmariadb-dev (1:11.8.3-1+b1) ...
|
|
1044
|
+
#7 26.73 Setting up libnghttp3-dev:amd64 (1.11.0-1) ...
|
|
1045
|
+
#7 26.73 Setting up liblzma-dev:amd64 (5.8.1-1.1) ...
|
|
1046
|
+
#7 26.74 Setting up libodbc2:amd64 (2.3.12-2+b1) ...
|
|
1047
|
+
#7 26.74 Setting up libffi8:amd64 (3.5.2-2) ...
|
|
1048
|
+
#7 26.75 Setting up libpcre2-posix3:amd64 (10.46-1) ...
|
|
1049
|
+
#7 26.75 Setting up mount (2.41.1-3) ...
|
|
1050
|
+
#7 26.75 Setting up libtiff6:amd64 (4.7.0-5) ...
|
|
1051
|
+
#7 26.76 Setting up libx11-6:amd64 (2:1.8.12-1) ...
|
|
1052
|
+
#7 26.76 Setting up xorg-sgml-doctools (1:1.11-1.1) ...
|
|
1053
|
+
#7 26.77 Setting up netbase (6.5) ...
|
|
1054
|
+
#7 26.78 Setting up libkrb5-3:amd64 (1.21.3-5) ...
|
|
1055
|
+
#7 26.78 Setting up libfontconfig1:amd64 (2.15.0-2.4) ...
|
|
1056
|
+
#7 26.79 Setting up libicu76:amd64 (76.1-4) ...
|
|
1057
|
+
#7 26.79 Setting up libmbedcrypto16:amd64 (3.6.4-2) ...
|
|
1058
|
+
#7 26.80 Setting up libgsl28:amd64 (2.8+dfsg-5.1) ...
|
|
1059
|
+
#7 26.81 Setting up libsharpyuv-dev:amd64 (1.5.0-0.1) ...
|
|
1060
|
+
#7 26.82 Setting up libc-dev-bin (2.41-12) ...
|
|
1061
|
+
#7 26.82 Setting up libtasn1-6-dev:amd64 (4.20.0-2) ...
|
|
1062
|
+
#7 26.82 Setting up openssl (3.5.2-1) ...
|
|
1063
|
+
#7 26.83 Installing new version of config file /etc/ssl/openssl.cnf ...
|
|
1064
|
+
#7 26.83 Setting up libwebpmux3:amd64 (1.5.0-0.1) ...
|
|
1065
|
+
#7 26.84 Setting up libtiffxx6:amd64 (4.7.0-5) ...
|
|
1066
|
+
#7 26.84 Setting up libsm6:amd64 (2:1.2.6-1) ...
|
|
1067
|
+
#7 26.85 Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ...
|
|
1068
|
+
#7 26.85 Setting up libldap2:amd64 (2.6.10+dfsg-1) ...
|
|
1069
|
+
#7 26.85 Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ...
|
|
1070
|
+
#7 26.86 Setting up libp11-kit-dev:amd64 (0.25.5-3) ...
|
|
1071
|
+
#7 26.86 Setting up libhttp-parser2.9:amd64 (2.9.4-6+b2) ...
|
|
1072
|
+
#7 26.87 Setting up libpython3-stdlib:amd64 (3.13.7-1) ...
|
|
1073
|
+
#7 26.88 Setting up libodbccr2:amd64 (2.3.12-2+b1) ...
|
|
1074
|
+
#7 26.88 Setting up login (1:4.16.0-2+really2.41.1-3) ...
|
|
1075
|
+
#7 26.90 Setting up libgnutls30t64:amd64 (3.8.9-3) ...
|
|
1076
|
+
#7 26.91 Setting up x11proto-dev (2024.1-1) ...
|
|
1077
|
+
#7 26.91 Setting up libmariadb-dev-compat (1:11.8.3-1+b1) ...
|
|
1078
|
+
#7 26.91 Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ...
|
|
1079
|
+
#7 26.91 Setting up libhttp-parser-dev:amd64 (2.9.4-6+b2) ...
|
|
1080
|
+
#7 26.92 Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ...
|
|
1081
|
+
#7 26.92 Setting up fontconfig (2.15.0-2.4) ...
|
|
1082
|
+
#7 26.93 Regenerating fonts cache... done.
|
|
1083
|
+
#7 28.95 Setting up libodbcinst2:amd64 (2.3.12-2+b1) ...
|
|
1084
|
+
#7 28.96 Setting up libgsl-dev (2.8+dfsg-5.1) ...
|
|
1085
|
+
#7 28.96 Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ...
|
|
1086
|
+
#7 28.96 Setting up libxau-dev:amd64 (1:1.0.11-1) ...
|
|
1087
|
+
#7 28.97 Setting up nettle-dev:amd64 (3.10.1-1) ...
|
|
1088
|
+
#7 28.97 Setting up libxrender1:amd64 (1:0.9.12-1) ...
|
|
1089
|
+
#7 28.98 Setting up libice-dev:amd64 (2:1.1.1-1) ...
|
|
1090
|
+
#7 28.98 Setting up python3.13 (3.13.7-1) ...
|
|
1091
|
+
#7 29.68 Setting up libpng-dev:amd64 (1.6.50-1) ...
|
|
1092
|
+
#7 29.68 Setting up python3 (3.13.7-1) ...
|
|
1093
|
+
#7 29.69 running python rtupdate hooks for python3.13...
|
|
1094
|
+
#7 29.96 running python post-rtupdate hooks for python3.13...
|
|
1095
|
+
#7 30.04 Setting up libffi-dev:amd64 (3.5.2-2) ...
|
|
1096
|
+
#7 30.04 Setting up libcairo2:amd64 (1.18.4-1+b1) ...
|
|
1097
|
+
#7 30.05 Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ...
|
|
1098
|
+
#7 30.05 Setting up libxml2-dev:amd64 (2.14.5+dfsg-0.2) ...
|
|
1099
|
+
#7 30.06 Setting up libglib2.0-0t64:amd64 (2.84.4-3) ...
|
|
1100
|
+
#7 30.06 No schema files found: doing nothing.
|
|
1101
|
+
#7 30.07 Setting up libwebp-dev:amd64 (1.5.0-0.1) ...
|
|
1102
|
+
#7 30.07 Setting up python3-packaging (25.0-1) ...
|
|
1103
|
+
#7 30.18 Setting up libmbedx509-7:amd64 (3.6.4-2) ...
|
|
1104
|
+
#7 30.19 Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ...
|
|
1105
|
+
#7 30.19 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ...
|
|
1106
|
+
#7 30.19 Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ...
|
|
1107
|
+
#7 30.20 Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ...
|
|
1108
|
+
#7 30.20 Setting up icu-devtools (76.1-4) ...
|
|
1109
|
+
#7 30.20 Setting up gir1.2-glib-2.0:amd64 (2.84.4-3) ...
|
|
1110
|
+
#7 30.21 Setting up libmbedtls21:amd64 (3.6.4-2) ...
|
|
1111
|
+
#7 30.21 Setting up gir1.2-glib-2.0-dev:amd64 (2.84.4-3) ...
|
|
1112
|
+
#7 30.22 Setting up libc6-dev:amd64 (2.41-12) ...
|
|
1113
|
+
#7 30.22 Setting up libharfbuzz0b:amd64 (11.4.5-1) ...
|
|
1114
|
+
#7 30.23 Setting up libcairo-gobject2:amd64 (1.18.4-1+b1) ...
|
|
1115
|
+
#7 30.23 Setting up libicu-dev:amd64 (76.1-4) ...
|
|
1116
|
+
#7 30.24 Setting up unixodbc-dev:amd64 (2.3.12-2+b1) ...
|
|
1117
|
+
#7 30.24 Setting up default-libmysqlclient-dev:amd64 (1.1.1) ...
|
|
1118
|
+
#7 30.24 Setting up libgnutls28-dev:amd64 (3.8.9-3) ...
|
|
1119
|
+
#7 30.25 Setting up libcairo-script-interpreter2:amd64 (1.18.4-1+b1) ...
|
|
1120
|
+
#7 30.25 Setting up libgio-2.0-dev-bin (2.84.4-3) ...
|
|
1121
|
+
#7 30.40 Setting up gir1.2-freedesktop:amd64 (1.84.0-1) ...
|
|
1122
|
+
#7 30.41 Setting up libharfbuzz-icu0:amd64 (11.4.5-1) ...
|
|
1123
|
+
#7 30.41 Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ...
|
|
1124
|
+
#7 30.42 Setting up libpcre2-dev:amd64 (10.46-1) ...
|
|
1125
|
+
#7 30.42 Setting up libcurl4t64:amd64 (8.15.0-1) ...
|
|
1126
|
+
#7 30.42 Setting up libgirepository-2.0-0:amd64 (2.84.4-3) ...
|
|
1127
|
+
#7 30.43 Setting up libselinux1-dev:amd64 (3.8.1-1) ...
|
|
1128
|
+
#7 30.43 Setting up libpq5:amd64 (17.6-1) ...
|
|
1129
|
+
#7 30.43 Setting up libx11-dev:amd64 (2:1.8.12-1) ...
|
|
1130
|
+
#7 30.44 Setting up libglib2.0-bin (2.84.4-3) ...
|
|
1131
|
+
#7 30.44 Setting up libpq-dev (17.6-1) ...
|
|
1132
|
+
#7 30.45 Setting up libharfbuzz-gobject0:amd64 (11.4.5-1) ...
|
|
1133
|
+
#7 30.45 Setting up libmbedtls-dev:amd64 (3.6.4-2) ...
|
|
1134
|
+
#7 30.46 Setting up gir1.2-harfbuzz-0.0:amd64 (11.4.5-1) ...
|
|
1135
|
+
#7 30.46 Setting up libfreetype-dev:amd64 (2.13.3+dfsg-1) ...
|
|
1136
|
+
#7 30.47 Setting up libxcb-shm0-dev:amd64 (1.17.0-2+b1) ...
|
|
1137
|
+
#7 30.47 Setting up libsasl2-dev (2.1.28+dfsg1-9) ...
|
|
1138
|
+
#7 30.47 Setting up libexpat1-dev:amd64 (2.7.1-2) ...
|
|
1139
|
+
#7 30.48 Setting up libharfbuzz-cairo0:amd64 (11.4.5-1) ...
|
|
1140
|
+
#7 30.48 Setting up libsqlite3-dev:amd64 (3.46.1-8) ...
|
|
1141
|
+
#7 30.49 Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-4) ...
|
|
1142
|
+
#7 30.49 Setting up libgssrpc4t64:amd64 (1.21.3-5) ...
|
|
1143
|
+
#7 30.49 Setting up uuid-dev:amd64 (2.41.1-3) ...
|
|
1144
|
+
#7 30.50 Setting up gir1.2-freedesktop-dev:amd64 (1.84.0-1) ...
|
|
1145
|
+
#7 30.50 Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ...
|
|
1146
|
+
#7 30.51 Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ...
|
|
1147
|
+
#7 30.51 Setting up libxcb-render0-dev:amd64 (1.17.0-2+b1) ...
|
|
1148
|
+
#7 30.52 Setting up libgit2-1.9:amd64 (1.9.1+ds-1) ...
|
|
1149
|
+
#7 30.52 Setting up libxext-dev:amd64 (2:1.3.4-1+b3) ...
|
|
1150
|
+
#7 30.52 Setting up libharfbuzz-subset0:amd64 (11.4.5-1) ...
|
|
1151
|
+
#7 30.53 Setting up libxrender-dev:amd64 (1:0.9.12-1) ...
|
|
1152
|
+
#7 30.53 Setting up libgit2-dev:amd64 (1.9.1+ds-1) ...
|
|
1153
|
+
#7 30.54 Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ...
|
|
1154
|
+
#7 30.54 Setting up libblkid-dev:amd64 (2.41.1-3) ...
|
|
1155
|
+
#7 30.54 Setting up girepository-tools:amd64 (2.84.4-3) ...
|
|
1156
|
+
#7 30.55 Setting up libkdb5-10t64:amd64 (1.21.3-5) ...
|
|
1157
|
+
#7 30.55 Setting up libfontconfig-dev:amd64 (2.15.0-2.4) ...
|
|
1158
|
+
#7 30.56 Setting up libsm-dev:amd64 (2:1.2.6-1) ...
|
|
1159
|
+
#7 30.56 Setting up libjpeg-dev:amd64 (1:2.1.5-4) ...
|
|
1160
|
+
#7 30.58 Setting up libtiff-dev:amd64 (4.7.0-5) ...
|
|
1161
|
+
#7 30.58 Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ...
|
|
1162
|
+
#7 30.59 Setting up libmount-dev:amd64 (2.41.1-3) ...
|
|
1163
|
+
#7 30.59 Setting up krb5-multidev:amd64 (1.21.3-5) ...
|
|
1164
|
+
#7 30.59 Setting up libglib2.0-dev-bin (2.84.4-3) ...
|
|
1165
|
+
#7 30.60 Setting up libgio-2.0-dev:amd64 (2.84.4-3) ...
|
|
1166
|
+
#7 30.60 Setting up libtiff5-dev:amd64 (4.7.0-5) ...
|
|
1167
|
+
#7 30.61 Setting up libkrb5-dev:amd64 (1.21.3-5) ...
|
|
1168
|
+
#7 30.61 Setting up libglib2.0-dev:amd64 (2.84.4-3) ...
|
|
1169
|
+
#7 30.62 Setting up libcurl4-openssl-dev:amd64 (8.15.0-1) ...
|
|
1170
|
+
#7 30.62 Setting up libcairo2-dev:amd64 (1.18.4-1+b1) ...
|
|
1171
|
+
#7 30.62 Setting up libharfbuzz-dev:amd64 (11.4.5-1) ...
|
|
1172
|
+
#7 30.63 Processing triggers for libc-bin (2.41-12) ...
|
|
1173
|
+
#7 DONE 31.1s
|
|
1180
1174
|
|
|
1181
1175
|
#8 [3/9] WORKDIR /app
|
|
1182
1176
|
#8 DONE 0.0s
|
|
1183
1177
|
|
|
1184
1178
|
#9 [4/9] RUN R -e "install.packages('renv', repos = 'https://cloud.r-project.org')"
|
|
1185
|
-
#9 0.
|
|
1186
|
-
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|
|
1187
|
-
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|
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1188
|
-
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|
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1189
|
-
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|
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1190
|
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1191
|
-
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|
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1192
|
-
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1193
|
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|
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1194
|
-
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|
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1195
|
-
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1196
|
-
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|
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1197
|
-
#9 0.
|
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1198
|
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#9 0.
|
|
1199
|
-
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|
|
1200
|
-
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|
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1201
|
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|
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1202
|
-
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|
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1203
|
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|
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1204
|
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|
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1205
|
-
#9 0.
|
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1206
|
-
#9 0.
|
|
1207
|
-
#9 1.
|
|
1208
|
-
#9 2.
|
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1209
|
-
#9 2.
|
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1210
|
-
#9 2.
|
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1211
|
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#9 2.
|
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1212
|
-
#9
|
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1213
|
-
#9
|
|
1214
|
-
#9
|
|
1215
|
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#9
|
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1216
|
-
#9
|
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1217
|
-
#9
|
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1218
|
-
#9
|
|
1219
|
-
#9
|
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1220
|
-
#9
|
|
1221
|
-
#9
|
|
1222
|
-
#9
|
|
1223
|
-
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#9 DONE
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#9 0.190
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#9 0.190 R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
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#9 0.190 Copyright (C) 2024 The R Foundation for Statistical Computing
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#9 0.190 Platform: x86_64-pc-linux-gnu
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#9 0.190 R is free software and comes with ABSOLUTELY NO WARRANTY.
|
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#9 0.190 You are welcome to redistribute it under certain conditions.
|
|
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|
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#9 0.190 Type 'license()' or 'licence()' for distribution details.
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|
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|
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|
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#9 0.190 Natural language support but running in an English locale
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|
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|
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#9 0.190 R is a collaborative project with many contributors.
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#9 0.190 Type 'contributors()' for more information and
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|
+
#9 0.190 'citation()' on how to cite R or R packages in publications.
|
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|
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|
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|
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#9 0.190 Type 'demo()' for some demos, 'help()' for on-line help, or
|
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|
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#9 0.190 'help.start()' for an HTML browser interface to help.
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#9 0.190 Type 'q()' to quit R.
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|
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#9 0.277 > install.packages('renv', repos = 'https://cloud.r-project.org')
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#9 0.279 Installing package into ‘/usr/local/lib/R/site-library’
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#9 1.440 trying URL 'https://cloud.r-project.org/src/contrib/renv_1.1.5.tar.gz'
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#9 2.071 Content type 'application/x-gzip' length 1255206 bytes (1.2 MB)
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#9 2.072 ==================================================
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#9 2.222 downloaded 1.2 MB
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#9 2.768 * installing *source* package ‘renv’ ...
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#9 2.787 ** package ‘renv’ successfully unpacked and MD5 sums checked
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#9 2.799 ** R
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#9 10.54 gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c renv.c -o renv.o
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#9 11.77 * DONE (renv)
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#9 DONE 11.8s
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#12 DONE
|
|
1240
|
+
#12 5.333 The following package(s) will be updated:
|
|
1241
|
+
#12 5.333
|
|
1242
|
+
#12 5.333 # Bioconductor ---------------------------------------------------------------
|
|
1243
|
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#12 5.333 - GenomeInfoDbData [* -> 1.2.13]
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|
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#12 5.333
|
|
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|
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#12 5.333 # Bioconductor 3.20 ----------------------------------------------------------
|
|
1246
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#12 5.333 - Biobase [* -> 2.66.0]
|
|
1247
|
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#12 5.333 - BiocGenerics [* -> 0.52.0]
|
|
1248
|
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#12 5.333 - BiocParallel [* -> 1.40.0]
|
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|
|
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|
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|
|
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|
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|
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|
|
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|
|
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|
|
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|
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|
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|
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|
|
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|
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#12 5.333 # CRAN -----------------------------------------------------------------------
|
|
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#12 5.333 - BiocManager [1.30.26 -> 1.30.25]
|
|
1266
|
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#12 5.333 - MASS [7.3-64 -> 7.3-60.2]
|
|
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|
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|
|
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|
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|
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|
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|
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|
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#12 5.333 - cpp11 [* -> 0.5.1]
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#12 7.785 - Downloading nlme from CRAN ... OK [817.2 Kb in 0.59s]
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#12 8.440 - Downloading BiocManager from CRAN ... OK [579.5 Kb in 0.82s]
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#12 17.43 - Downloading Biobase from Bioconductor 3.20 ... OK [1.9 Mb in 0.82s]
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#12 25.69 - Downloading lambda.r from CRAN ... OK [25.1 Kb in 0.86s]
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#12 26.63 - Downloading formatR from CRAN ... OK [93.8 Kb in 0.43s]
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#12 27.13 - Downloading futile.options from CRAN ... OK [3.8 Kb in 0.75s]
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#12 27.94 - Downloading snow from CRAN ... OK [20 Kb in 0.43s]
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#12 28.43 - Downloading cpp11 from CRAN ... OK [285 Kb in 0.34s]
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#12 28.81 - Downloading DESeq2 from Bioconductor 3.20 ... OK [2.4 Mb in 0.54s]
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#12 29.47 - Downloading matrixStats from CRAN ... OK [207.2 Kb in 0.44s]
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#12 29.99 - Downloading locfit from CRAN ... OK [196.1 Kb in 0.48s]
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#12 30.54 - Downloading ggplot2 from CRAN ... OK [3.4 Mb in 0.9s]
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#12 31.65 - Downloading cli from CRAN ... OK [554.8 Kb in 0.57s]
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#12 32.30 - Downloading glue from CRAN ... OK [123.7 Kb in 0.55s]
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#12 32.92 - Downloading gtable from CRAN ... OK [144.7 Kb in 0.45s]
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#12 33.46 - Downloading lifecycle from CRAN ... OK [105.1 Kb in 0.33s]
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#12 33.94 - Downloading rlang from CRAN ... OK [748.3 Kb in 0.61s]
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#12 34.65 - Downloading isoband from CRAN ... OK [1.5 Mb in 0.78s]
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#12 35.55 - Downloading scales from CRAN ... OK [295.5 Kb in 0.57s]
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#12 36.22 - Downloading farver from CRAN ... OK [1.2 Mb in 1.4s]
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#12 37.73 - Downloading labeling from CRAN ... OK [9.9 Kb in 0.54s]
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#12 38.36 - Downloading munsell from CRAN ... OK [178 Kb in 0.44s]
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#12 38.90 - Downloading colorspace from CRAN ... OK [2 Mb in 0.59s]
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#12 39.66 - Downloading R6 from CRAN ... OK [61.9 Kb in 0.56s]
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#12 40.31 - Downloading RColorBrewer from CRAN ... OK [11.4 Kb in 0.32s]
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#12 40.72 - Downloading viridisLite from CRAN ... OK [1.2 Mb in 0.79s]
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#12 41.61 - Downloading tibble from CRAN ... OK [552.7 Kb in 0.55s]
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#12 42.27 - Downloading fansi from CRAN ... OK [471.2 Kb in 0.35s]
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#12 42.75 - Downloading magrittr from CRAN ... OK [260.8 Kb in 0.34s]
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#12 43.22 - Downloading pillar from CRAN ... OK [397.5 Kb in 0.49s]
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#12 43.90 - Downloading utf8 from CRAN ... OK [235.4 Kb in 0.57s]
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#12 44.59 - Downloading vctrs from CRAN ... OK [946.4 Kb in 0.88s]
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#12 45.60 - Downloading pkgconfig from CRAN ... OK [5.9 Kb in 0.43s]
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#12 46.09 - Downloading withr from CRAN ... OK [100.8 Kb in 0.33s]
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#12 46.49 - Downloading Rcpp from CRAN ... OK [2.9 Mb in 0.7s]
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#12 63.78 - Installing Matrix ... OK [built from source and cached in 2.5m]
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#12 212.8 - Installing renv ... OK [built from source and cached in 9.8s]
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#12 222.7 - Installing nlme ... OK [built from source and cached in 13s]
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#12 235.4 - Installing BiocManager ... OK [built from source and cached in 1.9s]
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#12 237.3 - Installing MASS ... OK [built from source and cached in 5.8s]
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#12 244.6 - Installing BH ... OK [built from source and cached in 5.9s]
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#12 250.5 - Installing BiocGenerics ... OK [built from source and cached in 2.9s]
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#12 253.5 - Installing BiocVersion ... OK [built from source and cached in 0.76s]
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#12 254.3 - Installing Biobase ... OK [built from source and cached in 6.6s]
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#12 260.9 - Installing formatR ... OK [built from source and cached in 1.3s]
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#12 262.3 - Installing lambda.r ... OK [built from source and cached in 1.6s]
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#12 263.8 - Installing futile.options ... OK [built from source and cached in 1.0s]
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#12 264.9 - Installing futile.logger ... OK [built from source and cached in 1.4s]
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#12 266.3 - Installing snow ... OK [built from source and cached in 1.4s]
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#12 267.7 - Installing cpp11 ... OK [built from source and cached in 1.2s]
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#12 269.0 - Installing BiocParallel ... OK [built from source and cached in 9.7s]
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#12 278.7 - Installing matrixStats ... OK [built from source and cached in 12s]
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#12 290.8 - Installing locfit ... OK [built from source and cached in 9.2s]
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#12 300.1 - Installing cli ... OK [built from source and cached in 8.2s]
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#12 308.3 - Installing glue ... OK [built from source and cached in 1.6s]
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#12 309.9 - Installing rlang ... OK [built from source and cached in 11s]
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#12 320.6 - Installing lifecycle ... OK [built from source and cached in 1.7s]
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#12 322.3 - Installing gtable ... OK [built from source and cached in 2.1s]
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#12 324.4 - Installing isoband ... OK [built from source and cached in 4.4s]
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#12 328.9 - Installing farver ... OK [built from source and cached in 20s]
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#12 348.9 - Installing labeling ... OK [built from source and cached in 1.3s]
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#12 355.5 - Installing munsell ... OK [built from source and cached in 1.4s]
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#12 356.9 - Installing R6 ... OK [built from source and cached in 1.3s]
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#12 358.2 - Installing RColorBrewer ... OK [built from source and cached in 1.4s]
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#12 360.8 - Installing scales ... OK [built from source and cached in 4.2s]
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#12 365.0 - Installing fansi ... OK [built from source and cached in 3.8s]
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#12 368.8 - Installing magrittr ... OK [built from source and cached in 1.3s]
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#12 370.1 - Installing utf8 ... OK [built from source and cached in 3.3s]
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#12 390.3 - Installing pillar ... OK [built from source and cached in 3.6s]
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#12 395.0 - Installing tibble ... OK [built from source and cached in 3.5s]
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#12 398.5 - Installing withr ... OK [built from source and cached in 1.5s]
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#12 400.2 - Installing ggplot2 ... OK [built from source and cached in 14s]
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#12 414.7 - Installing Rcpp ... OK [built from source and cached in 18s]
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#12 432.7 - Installing MatrixGenerics ... OK [built from source and cached in 2.7s]
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#12 451.7 - Installing IRanges ... OK [built from source and cached in 41s]
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#12 493.1 - Installing zlibbioc ... OK [built from source and cached in 1.4s]
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#12 494.5 - Installing XVector ... OK [built from source and cached in 21s]
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#12 515.4 - Installing curl ... OK [built from source and cached in 3.8s]
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#12 519.2 - Installing jsonlite ... OK [built from source and cached in 3.8s]
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#12 523.0 - Installing mime ... OK [built from source and cached in 1.2s]
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#12 524.2 - Installing sys ... OK [built from source and cached in 1.3s]
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#12 525.5 - Installing askpass ... OK [built from source and cached in 1.1s]
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#12 526.7 - Installing openssl ... OK [built from source and cached in 4.8s]
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#12 531.5 - Installing httr ... OK [built from source and cached in 3.4s]
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#12 535.0 - Installing UCSC.utils ... OK [built from source and cached in 3.2s]
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#12 539.2 - Installing GenomeInfoDb ... OK [built from source and cached in 19s]
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#12 558.4 - Installing GenomicRanges ... OK [built from source and cached in 25s]
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#12 583.6 - Installing crayon ... OK [built from source and cached in 1.7s]
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#12 585.3 - Installing abind ... OK [built from source and cached in 1.3s]
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#12 586.7 - Installing S4Arrays ... OK [built from source and cached in 30s]
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#12 617.1 - Installing SparseArray ... OK [built from source and cached in 45s]
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#12 662.1 - Installing DelayedArray ... OK [built from source and cached in 46s]
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#12 708.2 - Installing SummarizedExperiment ... OK [built from source and cached in 52s]
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#12 759.8 - Installing RcppArmadillo ... OK [built from source and cached in 15s]
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#12 774.9 - Installing DESeq2 ... OK [built from source and cached in 49s]
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#12 823.5 - Installing plyr ... OK [built from source and cached in 6.2s]
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#12 830.0 - Installing stringi ... OK [built from source and cached in 55s]
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#12 885.4 - Installing stringr ... OK [built from source and cached in 2.2s]
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#12 887.6 - Installing reshape2 ... OK [built from source and cached in 6.5s]
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#12 894.2
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#12 894.2 The following loaded package(s) have been updated:
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#12 DONE 894.3s
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#15 exporting to image
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#15 exporting layers
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#15 exporting layers 8.
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#15 writing image sha256:
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#15 naming to containers.pl-open.science/milaboratories/pl-containers:local-image.
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#15 DONE 8.
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Untagged: containers.pl-open.science/milaboratories/pl-containers:local-image.
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#15 exporting layers 8.8s done
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#15 writing image sha256:d0e8c56ffdd89db35849ec1f55f9f9609015be524237693b7cdfd7f28f795cec done
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#15 naming to containers.pl-open.science/milaboratories/pl-containers:local-image.d296966a4e85 done
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#15 DONE 8.8s
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Untagged: containers.pl-open.science/milaboratories/pl-containers:local-image.d296966a4e85
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[32minfo[39m: Docker image is built:
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tag: 'containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.run-diff-clonotype-abundance-deseq2-r.software.main.
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tag: 'containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.run-diff-clonotype-abundance-deseq2-r.software.main.d0e8c56ffdd8'
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location file: '/home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/software/dist/artifacts/main/docker_x64.json'
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[32minfo[39m: Building software package 'main' for platform 'linux-x64'...
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[32minfo[39m: software archive is built:
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archive: '/home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/software/pkg-platforma-open-milaboratories.run-diff-clonotype-abundance-deseq2-r.software-main-1.11.
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archive: '/home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/software/pkg-platforma-open-milaboratories.run-diff-clonotype-abundance-deseq2-r.software-main-1.11.1.tgz'
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location file: '/home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/software/dist/artifacts/main/archive.json'
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[32minfo[39m: Rendering entrypoint descriptors...
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[32minfo[39m: Writing entrypoint descriptor to '/home/runner/work/differential-clonotype-abundance/differential-clonotype-abundance/software/dist/tengo/software/main.sw.json'
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[32minfo[39m: Publishing docker image 'containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.run-diff-clonotype-abundance-deseq2-r.software.main.
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[32minfo[39m: Publishing docker image 'containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.run-diff-clonotype-abundance-deseq2-r.software.main.d0e8c56ffdd8' into registry 'default'
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The push refers to repository [containers.pl-open.science/milaboratories/pl-containers]
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platforma-open.milaboratories.run-diff-clonotype-abundance-deseq2-r.software.main.d0e8c56ffdd8: digest: sha256:26e322f3041141743613b9a1c779b29f9b2e9fdf57acb1e16baa1a3c8c2d1b6f size: 3252
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