@platforma-open/milaboratories.repertoire-diversity-2.model 1.5.6 → 1.5.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +5 -5
- package/.turbo/turbo-lint.log +1 -1
- package/.turbo/turbo-type-check.log +1 -1
- package/CHANGELOG.md +12 -0
- package/dist/bundle.js +453 -31
- package/dist/bundle.js.map +1 -1
- package/dist/index.cjs +5 -2
- package/dist/index.cjs.map +1 -1
- package/dist/index.d.ts +17 -18
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +5 -3
- package/dist/index.js.map +1 -1
- package/dist/label.cjs +12 -0
- package/dist/label.cjs.map +1 -0
- package/dist/label.d.ts +4 -0
- package/dist/label.d.ts.map +1 -0
- package/dist/label.js +10 -0
- package/dist/label.js.map +1 -0
- package/dist/model.json +1 -1
- package/package.json +7 -6
- package/src/index.ts +6 -2
- package/src/label.ts +10 -0
package/dist/index.cjs
CHANGED
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@@ -1,12 +1,14 @@
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'use strict';
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var model$1 = require('@platforma-sdk/model');
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var strings = require('@milaboratories/strings');
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var label = require('./label.cjs');
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var converters = require('./converters.cjs');
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const model = model$1.BlockModel.create()
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.withArgs({
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metrics: [],
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defaultBlockLabel:
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defaultBlockLabel: label.getDefaultBlockLabel({}),
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customBlockLabel: '',
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})
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.withUiState({
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@@ -107,11 +109,12 @@ const model = model$1.BlockModel.create()
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.title(() => 'Repertoire Diversity')
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.subtitle((ctx) => ctx.args.customBlockLabel || ctx.args.defaultBlockLabel)
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.sections((_) => [
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{ type: 'link', href: '/', label:
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{ type: 'link', href: '/', label: strings.titles.main },
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{ type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },
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])
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.done(2);
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exports.getDefaultBlockLabel = label.getDefaultBlockLabel;
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exports.convertMetricsUiToArgs = converters.convertMetricsUiToArgs;
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exports.model = model;
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//# sourceMappingURL=index.cjs.map
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package/dist/index.cjs.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"file":"index.cjs","sources":["../src/index.ts"],"sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n defaultBlockLabel: string;\n customBlockLabel: string;\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n defaultBlockLabel:
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{"version":3,"file":"index.cjs","sources":["../src/index.ts"],"sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\nimport strings from '@milaboratories/strings';\nimport { getDefaultBlockLabel } from './label';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n defaultBlockLabel: string;\n customBlockLabel: string;\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n defaultBlockLabel: getDefaultBlockLabel({}),\n customBlockLabel: '',\n })\n\n .withUiState<UiState>({\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined\n && ctx.args.metrics.every((metric) => metric.type !== undefined))\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ], { includeNativeLabel: true }),\n )\n\n .outputWithStatus('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);\n })\n\n .outputWithStatus('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title(() => 'Repertoire Diversity')\n\n .subtitle((ctx) => ctx.args.customBlockLabel || ctx.args.defaultBlockLabel)\n\n .sections((_) => [\n { type: 'link', href: '/', label: strings.titles.main },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done(2);\n\nexport { getDefaultBlockLabel } from './label';\n"],"names":["BlockModel","getDefaultBlockLabel","createPlDataTableStateV2","createPlDataTableV2","createPFrameForGraphs"],"mappings":";;;;;;;AAuCO,MAAM,KAAK,GAAGA,kBAAU,CAAC,MAAM;AACnC,KAAA,QAAQ,CAAY;AACnB,IAAA,OAAO,EAAE,EAAE;AACX,IAAA,iBAAiB,EAAEC,0BAAoB,CAAC,EAAE,CAAC;AAC3C,IAAA,gBAAgB,EAAE,EAAE;CACrB;AAEA,KAAA,WAAW,CAAU;AACpB,IAAA,UAAU,EAAE;AACV,QAAA,KAAK,EAAE,sBAAsB;AAC7B,QAAA,QAAQ,EAAE,KAAK;AACf,QAAA,UAAU,EAAE,IAAI;AACjB,KAAA;IAED,UAAU,EAAEC,gCAAwB,EAAE;AAEtC,IAAA,OAAO,EAAE;AACP,QAAA;AACE,YAAA,EAAE,EAAE,UAAU;AACd,YAAA,IAAI,EAAE,UAAU;AAChB,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,eAAe;AACnB,YAAA,IAAI,EAAE,eAAe;AACrB,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,OAAO;AACX,YAAA,IAAI,EAAE,OAAO;AACb,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,MAAM;AACV,YAAA,IAAI,EAAE,MAAM;AACZ,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,KAAK;AACT,YAAA,IAAI,EAAE,KAAK;AACX,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACF,KAAA;CACF;AAEA,KAAA,SAAS,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,IAAI,CAAC,YAAY,KAAK;AACzC,OAAA,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,MAAM,KAAK,MAAM,CAAC,IAAI,KAAK,SAAS,CAAC;AAEjE,KAAA,MAAM,CAAC,kBAAkB,EAAE,CAAC,GAAG,KAC9B,GAAG,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC;AACzB,QAAA,IAAI,EAAE;YACJ,EAAE,IAAI,EAAE,kBAAkB,EAAE;YAC5B,EAAG;AACJ,SAAA;AACD,QAAA,WAAW,EAAE;AACX,YAAA,qBAAqB,EAAE,MAAM;AAC7B,YAAA,8BAA8B,EAAE,OAAO;AACvC,YAAA,6BAA6B,EAAE,MAAM;AACtC,SAAA;AACF,KAAA;AACA,CAAA,EAAE,EAAE,kBAAkB,EAAE,IAAI,EAAE,CAAC;AAGjC,KAAA,gBAAgB,CAAC,IAAI,EAAE,CAAC,GAAG,KAAI;AAC9B,IAAA,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE;AACvD,IAAA,IAAI,KAAK,KAAK,SAAS,EAAE;AACvB,QAAA,OAAO,SAAS;IAClB;AAEA,IAAA,OAAOC,2BAAmB,CAAC,GAAG,EAAE,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,UAAU,CAAC;AAChE,CAAC;AAEA,KAAA,gBAAgB,CAAC,IAAI,EAAE,CAAC,GAAG,KAAI;AAC9B,IAAA,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE;AACvD,IAAA,IAAI,KAAK,KAAK,SAAS,EAAE;AACvB,QAAA,OAAO,SAAS;IAClB;AAEA,IAAA,OAAOC,6BAAqB,CAAC,GAAG,EAAE,KAAK,CAAC;AAC1C,CAAC;;AAGA,KAAA,MAAM,CAAC,OAAO,EAAE,CAAC,GAAG,KAAI;AACvB,IAAA,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE;IAEvD,IAAI,KAAK,KAAK,SAAS,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE;AAC7C,QAAA,OAAO,SAAS;IAClB;IAEA,OAAO,KAAK,CAAC,GAAG,CACd,CAAC,CAAC,MACC;QACC,QAAQ,EAAE,CAAC,CAAC,EAAE;QACd,IAAI,EAAE,CAAC,CAAC,IAAI;AACe,KAAA,CAAA,CAChC;AACH,CAAC;AAEA,KAAA,MAAM,CAAC,WAAW,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,OAAO,EAAE,iBAAiB,EAAE,KAAK,KAAK;AAEvE,KAAA,KAAK,CAAC,MAAM,sBAAsB;AAElC,KAAA,QAAQ,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,IAAI,CAAC,gBAAgB,IAAI,GAAG,CAAC,IAAI,CAAC,iBAAiB;AAEzE,KAAA,QAAQ,CAAC,CAAC,CAAC,KAAK;AACf,IAAA,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,OAAO,CAAC,MAAM,CAAC,IAAI,EAAE;IACvD,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,iBAAiB,EAAE,KAAK,EAAE,iBAAiB,EAAE;CACpE;KAEA,IAAI,CAAC,CAAC;;;;;;"}
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package/dist/index.d.ts
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};
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export declare const model: import("@platforma-sdk/model").PlatformaExtended<import("@platforma-sdk/model").PlatformaV2<BlockArgs, {
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abundanceOptions: import("@platforma-sdk/model").
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export declare const model: import("@platforma-sdk/model").PlatformaExtended<import("@platforma-sdk/model").PlatformaV2<BlockArgs, import("@platforma-sdk/model").InferOutputsFromConfigs<BlockArgs, {
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abundanceOptions: import("@platforma-sdk/model").ConfigRenderLambda<{
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readonly ref: {
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};
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readonly label: string;
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}[]
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pt: import("@platforma-sdk/model").OutputWithStatus<{
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}[]>;
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} & {
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pt: import("@platforma-sdk/model").ConfigRenderLambda<{
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fullTableHandle: import("@platforma-sdk/model").PTableHandle;
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visibleTableHandle: import("@platforma-sdk/model").PTableHandle;
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}> & {
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} | undefined> & {
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withStatus: true;
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} & {
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pf: import("@platforma-sdk/model").ConfigRenderLambda<import("@platforma-sdk/model").PFrameHandle | undefined> & {
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} & {
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}[];
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};
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}, UiState, "/" | "/diversityGraph">>;
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}[] | undefined>;
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} & {
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isRunning: import("@platforma-sdk/model").ConfigRenderLambda<boolean>;
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}, UiState>, UiState, "/" | "/diversityGraph">>;
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export { getDefaultBlockLabel } from './label';
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//# sourceMappingURL=index.d.ts.map
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package/dist/index.d.ts.map
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AACnE,OAAO,KAAK,EAAoB,kBAAkB,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AACnE,OAAO,KAAK,EAAoB,kBAAkB,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;AAKxF,cAAc,cAAc,CAAC;AAE7B,MAAM,MAAM,aAAa,GAAG,OAAO,GAAG,KAAK,GAAG,cAAc,GAC1D,UAAU,GAAG,oBAAoB,GAAG,eAAe,GACnD,yBAAyB,GAAG,gBAAgB,GAAG,MAAM,CAAC;AAExD,MAAM,MAAM,MAAM,GAAG;IACnB,IAAI,EAAE,aAAa,GAAG,SAAS,CAAC;IAChC,YAAY,EAAE;QACZ,IAAI,CAAC,EAAE,MAAM,GAAG,KAAK,GAAG,QAAQ,GAAG,gBAAgB,CAAE;QACrD,YAAY,CAAC,EAAE,KAAK,GAAG,OAAO,GAAG,KAAK,GAAG,MAAM,CAAC;QAChD,CAAC,CAAC,EAAE,MAAM,CAAC;KACZ,CAAC;CACH,CAAC;AAEF,MAAM,MAAM,QAAQ,GAAG,MAAM,GAAG;IAC9B,EAAE,EAAE,MAAM,CAAC;IACX,UAAU,CAAC,EAAE,OAAO,CAAC;CACtB,CAAC;AAEF,MAAM,MAAM,SAAS,GAAG;IACtB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,gBAAgB,EAAE,MAAM,CAAC;IACzB,YAAY,CAAC,EAAE,KAAK,CAAC;IACrB,OAAO,EAAE,MAAM,EAAE,CAAC;CACnB,CAAC;AAEF,MAAM,MAAM,OAAO,GAAG;IACpB,OAAO,EAAE,QAAQ,EAAE,CAAC;IACpB,UAAU,EAAE,kBAAkB,CAAC;IAC/B,UAAU,EAAE,eAAe,CAAC;CAC7B,CAAC;AAEF,eAAO,MAAM,KAAK;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;+CAiIR,CAAC;AAEX,OAAO,EAAE,oBAAoB,EAAE,MAAM,SAAS,CAAC"}
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package/dist/index.js
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import { BlockModel, createPlDataTableStateV2, createPlDataTableV2, createPFrameForGraphs } from '@platforma-sdk/model';
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import strings from '@milaboratories/strings';
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import { getDefaultBlockLabel } from './label.js';
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export { convertMetricsUiToArgs } from './converters.js';
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defaultBlockLabel: getDefaultBlockLabel({}),
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.title(() => 'Repertoire Diversity')
|
|
106
108
|
.subtitle((ctx) => ctx.args.customBlockLabel || ctx.args.defaultBlockLabel)
|
|
107
109
|
.sections((_) => [
|
|
108
|
-
{ type: 'link', href: '/', label:
|
|
110
|
+
{ type: 'link', href: '/', label: strings.titles.main },
|
|
109
111
|
{ type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },
|
|
110
112
|
])
|
|
111
113
|
.done(2);
|
|
112
114
|
|
|
113
|
-
export { model };
|
|
115
|
+
export { getDefaultBlockLabel, model };
|
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|
//# sourceMappingURL=index.js.map
|
package/dist/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
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|
-
{"version":3,"file":"index.js","sources":["../src/index.ts"],"sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n defaultBlockLabel: string;\n customBlockLabel: string;\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n defaultBlockLabel:
|
|
1
|
+
{"version":3,"file":"index.js","sources":["../src/index.ts"],"sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\nimport strings from '@milaboratories/strings';\nimport { getDefaultBlockLabel } from './label';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n defaultBlockLabel: string;\n customBlockLabel: string;\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n defaultBlockLabel: getDefaultBlockLabel({}),\n customBlockLabel: '',\n })\n\n .withUiState<UiState>({\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined\n && ctx.args.metrics.every((metric) => metric.type !== undefined))\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ], { includeNativeLabel: true }),\n )\n\n .outputWithStatus('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);\n })\n\n .outputWithStatus('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title(() => 'Repertoire Diversity')\n\n .subtitle((ctx) => ctx.args.customBlockLabel || ctx.args.defaultBlockLabel)\n\n .sections((_) => [\n { type: 'link', href: '/', label: strings.titles.main },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done(2);\n\nexport { getDefaultBlockLabel } from './label';\n"],"names":[],"mappings":";;;;;AAuCO,MAAM,KAAK,GAAG,UAAU,CAAC,MAAM;AACnC,KAAA,QAAQ,CAAY;AACnB,IAAA,OAAO,EAAE,EAAE;AACX,IAAA,iBAAiB,EAAE,oBAAoB,CAAC,EAAE,CAAC;AAC3C,IAAA,gBAAgB,EAAE,EAAE;CACrB;AAEA,KAAA,WAAW,CAAU;AACpB,IAAA,UAAU,EAAE;AACV,QAAA,KAAK,EAAE,sBAAsB;AAC7B,QAAA,QAAQ,EAAE,KAAK;AACf,QAAA,UAAU,EAAE,IAAI;AACjB,KAAA;IAED,UAAU,EAAE,wBAAwB,EAAE;AAEtC,IAAA,OAAO,EAAE;AACP,QAAA;AACE,YAAA,EAAE,EAAE,UAAU;AACd,YAAA,IAAI,EAAE,UAAU;AAChB,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,eAAe;AACnB,YAAA,IAAI,EAAE,eAAe;AACrB,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,OAAO;AACX,YAAA,IAAI,EAAE,OAAO;AACb,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,MAAM;AACV,YAAA,IAAI,EAAE,MAAM;AACZ,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,KAAK;AACT,YAAA,IAAI,EAAE,KAAK;AACX,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACF,KAAA;CACF;AAEA,KAAA,SAAS,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,IAAI,CAAC,YAAY,KAAK;AACzC,OAAA,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,MAAM,KAAK,MAAM,CAAC,IAAI,KAAK,SAAS,CAAC;AAEjE,KAAA,MAAM,CAAC,kBAAkB,EAAE,CAAC,GAAG,KAC9B,GAAG,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC;AACzB,QAAA,IAAI,EAAE;YACJ,EAAE,IAAI,EAAE,kBAAkB,EAAE;YAC5B,EAAG;AACJ,SAAA;AACD,QAAA,WAAW,EAAE;AACX,YAAA,qBAAqB,EAAE,MAAM;AAC7B,YAAA,8BAA8B,EAAE,OAAO;AACvC,YAAA,6BAA6B,EAAE,MAAM;AACtC,SAAA;AACF,KAAA;AACA,CAAA,EAAE,EAAE,kBAAkB,EAAE,IAAI,EAAE,CAAC;AAGjC,KAAA,gBAAgB,CAAC,IAAI,EAAE,CAAC,GAAG,KAAI;AAC9B,IAAA,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE;AACvD,IAAA,IAAI,KAAK,KAAK,SAAS,EAAE;AACvB,QAAA,OAAO,SAAS;IAClB;AAEA,IAAA,OAAO,mBAAmB,CAAC,GAAG,EAAE,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,UAAU,CAAC;AAChE,CAAC;AAEA,KAAA,gBAAgB,CAAC,IAAI,EAAE,CAAC,GAAG,KAAI;AAC9B,IAAA,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE;AACvD,IAAA,IAAI,KAAK,KAAK,SAAS,EAAE;AACvB,QAAA,OAAO,SAAS;IAClB;AAEA,IAAA,OAAO,qBAAqB,CAAC,GAAG,EAAE,KAAK,CAAC;AAC1C,CAAC;;AAGA,KAAA,MAAM,CAAC,OAAO,EAAE,CAAC,GAAG,KAAI;AACvB,IAAA,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE;IAEvD,IAAI,KAAK,KAAK,SAAS,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE;AAC7C,QAAA,OAAO,SAAS;IAClB;IAEA,OAAO,KAAK,CAAC,GAAG,CACd,CAAC,CAAC,MACC;QACC,QAAQ,EAAE,CAAC,CAAC,EAAE;QACd,IAAI,EAAE,CAAC,CAAC,IAAI;AACe,KAAA,CAAA,CAChC;AACH,CAAC;AAEA,KAAA,MAAM,CAAC,WAAW,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,OAAO,EAAE,iBAAiB,EAAE,KAAK,KAAK;AAEvE,KAAA,KAAK,CAAC,MAAM,sBAAsB;AAElC,KAAA,QAAQ,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,IAAI,CAAC,gBAAgB,IAAI,GAAG,CAAC,IAAI,CAAC,iBAAiB;AAEzE,KAAA,QAAQ,CAAC,CAAC,CAAC,KAAK;AACf,IAAA,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,OAAO,CAAC,MAAM,CAAC,IAAI,EAAE;IACvD,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,iBAAiB,EAAE,KAAK,EAAE,iBAAiB,EAAE;CACpE;KAEA,IAAI,CAAC,CAAC;;;;"}
|
package/dist/label.cjs
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
'use strict';
|
|
2
|
+
|
|
3
|
+
function getDefaultBlockLabel(data) {
|
|
4
|
+
// Return abundance label if available, otherwise default message
|
|
5
|
+
if (data.abundanceLabel) {
|
|
6
|
+
return data.abundanceLabel;
|
|
7
|
+
}
|
|
8
|
+
return 'Select Abundance and Metrics';
|
|
9
|
+
}
|
|
10
|
+
|
|
11
|
+
exports.getDefaultBlockLabel = getDefaultBlockLabel;
|
|
12
|
+
//# sourceMappingURL=label.cjs.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"label.cjs","sources":["../src/label.ts"],"sourcesContent":["export function getDefaultBlockLabel(data: {\n abundanceLabel?: string;\n}) {\n // Return abundance label if available, otherwise default message\n if (data.abundanceLabel) {\n return data.abundanceLabel;\n }\n\n return 'Select Abundance and Metrics';\n}\n"],"names":[],"mappings":";;AAAM,SAAU,oBAAoB,CAAC,IAEpC,EAAA;;AAEC,IAAA,IAAI,IAAI,CAAC,cAAc,EAAE;QACvB,OAAO,IAAI,CAAC,cAAc;IAC5B;AAEA,IAAA,OAAO,8BAA8B;AACvC;;;;"}
|
package/dist/label.d.ts
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"label.d.ts","sourceRoot":"","sources":["../src/label.ts"],"names":[],"mappings":"AAAA,wBAAgB,oBAAoB,CAAC,IAAI,EAAE;IACzC,cAAc,CAAC,EAAE,MAAM,CAAC;CACzB,UAOA"}
|
package/dist/label.js
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
function getDefaultBlockLabel(data) {
|
|
2
|
+
// Return abundance label if available, otherwise default message
|
|
3
|
+
if (data.abundanceLabel) {
|
|
4
|
+
return data.abundanceLabel;
|
|
5
|
+
}
|
|
6
|
+
return 'Select Abundance and Metrics';
|
|
7
|
+
}
|
|
8
|
+
|
|
9
|
+
export { getDefaultBlockLabel };
|
|
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|
+
//# sourceMappingURL=label.js.map
|
|
@@ -0,0 +1 @@
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|
1
|
+
{"version":3,"file":"label.js","sources":["../src/label.ts"],"sourcesContent":["export function getDefaultBlockLabel(data: {\n abundanceLabel?: string;\n}) {\n // Return abundance label if available, otherwise default message\n if (data.abundanceLabel) {\n return data.abundanceLabel;\n }\n\n return 'Select Abundance and Metrics';\n}\n"],"names":[],"mappings":"AAAM,SAAU,oBAAoB,CAAC,IAEpC,EAAA;;AAEC,IAAA,IAAI,IAAI,CAAC,cAAc,EAAE;QACvB,OAAO,IAAI,CAAC,cAAc;IAC5B;AAEA,IAAA,OAAO,8BAA8B;AACvC;;;;"}
|