@platforma-open/milaboratories.repertoire-diversity-2.model 1.5.5 → 1.5.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +4 -4
- package/.turbo/turbo-lint.log +1 -1
- package/.turbo/turbo-type-check.log +1 -1
- package/CHANGELOG.md +12 -0
- package/dist/bundle.js +8 -6
- package/dist/bundle.js.map +1 -1
- package/dist/index.cjs +5 -3
- package/dist/index.cjs.map +1 -1
- package/dist/index.d.ts +3 -3
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +5 -3
- package/dist/index.js.map +1 -1
- package/dist/model.json +1 -1
- package/package.json +4 -4
- package/src/index.ts +9 -7
package/dist/index.cjs
CHANGED
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@@ -6,9 +6,10 @@ var converters = require('./converters.cjs');
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const model = model$1.BlockModel.create()
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.withArgs({
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metrics: [],
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defaultBlockLabel: 'Select abundance and metrics',
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customBlockLabel: '',
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})
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.withUiState({
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blockTitle: 'Repertoire Diversity',
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graphState: {
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title: 'Repertoire Diversity',
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template: 'bar',
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@@ -76,7 +77,7 @@ const model = model$1.BlockModel.create()
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'pl7.app/abundance/isPrimary': 'true',
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},
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},
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]))
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], { includeNativeLabel: true }))
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.outputWithStatus('pt', (ctx) => {
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const pCols = ctx.outputs?.resolve('pf')?.getPColumns();
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if (pCols === undefined) {
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@@ -103,7 +104,8 @@ const model = model$1.BlockModel.create()
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}));
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})
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.output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)
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.title((
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.title(() => 'Repertoire Diversity')
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.subtitle((ctx) => ctx.args.customBlockLabel || ctx.args.defaultBlockLabel)
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.sections((_) => [
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{ type: 'link', href: '/', label: 'Main' },
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{ type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },
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package/dist/index.cjs.map
CHANGED
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@@ -1 +1 @@
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1
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{"version":3,"file":"index.cjs","sources":["../src/index.ts"],"sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type {
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{"version":3,"file":"index.cjs","sources":["../src/index.ts"],"sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n defaultBlockLabel: string;\n customBlockLabel: string;\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n defaultBlockLabel: 'Select abundance and metrics',\n customBlockLabel: '',\n })\n\n .withUiState<UiState>({\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined\n && ctx.args.metrics.every((metric) => metric.type !== undefined))\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ], { includeNativeLabel: true }),\n )\n\n .outputWithStatus('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);\n })\n\n .outputWithStatus('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title(() => 'Repertoire Diversity')\n\n .subtitle((ctx) => ctx.args.customBlockLabel || ctx.args.defaultBlockLabel)\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done(2);\n"],"names":["BlockModel","createPlDataTableStateV2","createPlDataTableV2","createPFrameForGraphs"],"mappings":";;;;;AAqCO,MAAM,KAAK,GAAGA,kBAAU,CAAC,MAAM;AACnC,KAAA,QAAQ,CAAY;AACnB,IAAA,OAAO,EAAE,EAAE;AACX,IAAA,iBAAiB,EAAE,8BAA8B;AACjD,IAAA,gBAAgB,EAAE,EAAE;CACrB;AAEA,KAAA,WAAW,CAAU;AACpB,IAAA,UAAU,EAAE;AACV,QAAA,KAAK,EAAE,sBAAsB;AAC7B,QAAA,QAAQ,EAAE,KAAK;AACf,QAAA,UAAU,EAAE,IAAI;AACjB,KAAA;IAED,UAAU,EAAEC,gCAAwB,EAAE;AAEtC,IAAA,OAAO,EAAE;AACP,QAAA;AACE,YAAA,EAAE,EAAE,UAAU;AACd,YAAA,IAAI,EAAE,UAAU;AAChB,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,eAAe;AACnB,YAAA,IAAI,EAAE,eAAe;AACrB,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,OAAO;AACX,YAAA,IAAI,EAAE,OAAO;AACb,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,MAAM;AACV,YAAA,IAAI,EAAE,MAAM;AACZ,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACD,QAAA;AACE,YAAA,EAAE,EAAE,KAAK;AACT,YAAA,IAAI,EAAE,KAAK;AACX,YAAA,YAAY,EAAE;AACZ,gBAAA,IAAI,EAAE,gBAAgB;AACtB,gBAAA,YAAY,EAAE,MAAM;AACrB,aAAA;AACD,YAAA,UAAU,EAAE,KAAK;AAClB,SAAA;AACF,KAAA;CACF;AAEA,KAAA,SAAS,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,IAAI,CAAC,YAAY,KAAK;AACzC,OAAA,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,MAAM,KAAK,MAAM,CAAC,IAAI,KAAK,SAAS,CAAC;AAEjE,KAAA,MAAM,CAAC,kBAAkB,EAAE,CAAC,GAAG,KAC9B,GAAG,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC;AACzB,QAAA,IAAI,EAAE;YACJ,EAAE,IAAI,EAAE,kBAAkB,EAAE;YAC5B,EAAG;AACJ,SAAA;AACD,QAAA,WAAW,EAAE;AACX,YAAA,qBAAqB,EAAE,MAAM;AAC7B,YAAA,8BAA8B,EAAE,OAAO;AACvC,YAAA,6BAA6B,EAAE,MAAM;AACtC,SAAA;AACF,KAAA;AACA,CAAA,EAAE,EAAE,kBAAkB,EAAE,IAAI,EAAE,CAAC;AAGjC,KAAA,gBAAgB,CAAC,IAAI,EAAE,CAAC,GAAG,KAAI;AAC9B,IAAA,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE;AACvD,IAAA,IAAI,KAAK,KAAK,SAAS,EAAE;AACvB,QAAA,OAAO,SAAS;IAClB;AAEA,IAAA,OAAOC,2BAAmB,CAAC,GAAG,EAAE,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,UAAU,CAAC;AAChE,CAAC;AAEA,KAAA,gBAAgB,CAAC,IAAI,EAAE,CAAC,GAAG,KAAI;AAC9B,IAAA,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE;AACvD,IAAA,IAAI,KAAK,KAAK,SAAS,EAAE;AACvB,QAAA,OAAO,SAAS;IAClB;AAEA,IAAA,OAAOC,6BAAqB,CAAC,GAAG,EAAE,KAAK,CAAC;AAC1C,CAAC;;AAGA,KAAA,MAAM,CAAC,OAAO,EAAE,CAAC,GAAG,KAAI;AACvB,IAAA,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE;IAEvD,IAAI,KAAK,KAAK,SAAS,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE;AAC7C,QAAA,OAAO,SAAS;IAClB;IAEA,OAAO,KAAK,CAAC,GAAG,CACd,CAAC,CAAC,MACC;QACC,QAAQ,EAAE,CAAC,CAAC,EAAE;QACd,IAAI,EAAE,CAAC,CAAC,IAAI;AACe,KAAA,CAAA,CAChC;AACH,CAAC;AAEA,KAAA,MAAM,CAAC,WAAW,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,OAAO,EAAE,iBAAiB,EAAE,KAAK,KAAK;AAEvE,KAAA,KAAK,CAAC,MAAM,sBAAsB;AAElC,KAAA,QAAQ,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,IAAI,CAAC,gBAAgB,IAAI,GAAG,CAAC,IAAI,CAAC,iBAAiB;AAEzE,KAAA,QAAQ,CAAC,CAAC,CAAC,KAAK;IACf,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,MAAM,EAAE;IAC1C,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,iBAAiB,EAAE,KAAK,EAAE,iBAAiB,EAAE;CACpE;KAEA,IAAI,CAAC,CAAC;;;;;"}
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package/dist/index.d.ts
CHANGED
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import type { GraphMakerState } from '@milaboratories/graph-maker';
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import type {
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import type { PlDataTableStateV2, PlRef } from '@platforma-sdk/model';
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export * from './converters';
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export type DiversityType = 'chao1' | 'd50' | 'efronThisted' | 'observed' | 'shannonWienerIndex' | 'shannonWiener' | 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';
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export type Metric = {
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export type BlockArgs = {
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abundanceRef?: PlRef;
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export type UiState = {
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};
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};
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}, UiState, "/" | "/diversityGraph">>;
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export type BlockOutputs = InferOutputsType<typeof model>;
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//# sourceMappingURL=index.d.ts.map
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package/dist/index.d.ts.map
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AACnE,OAAO,KAAK,
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AACnE,OAAO,KAAK,EAAoB,kBAAkB,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;AAGxF,cAAc,cAAc,CAAC;AAE7B,MAAM,MAAM,aAAa,GAAG,OAAO,GAAG,KAAK,GAAG,cAAc,GAC1D,UAAU,GAAG,oBAAoB,GAAG,eAAe,GACnD,yBAAyB,GAAG,gBAAgB,GAAG,MAAM,CAAC;AAExD,MAAM,MAAM,MAAM,GAAG;IACnB,IAAI,EAAE,aAAa,GAAG,SAAS,CAAC;IAChC,YAAY,EAAE;QACZ,IAAI,CAAC,EAAE,MAAM,GAAG,KAAK,GAAG,QAAQ,GAAG,gBAAgB,CAAE;QACrD,YAAY,CAAC,EAAE,KAAK,GAAG,OAAO,GAAG,KAAK,GAAG,MAAM,CAAC;QAChD,CAAC,CAAC,EAAE,MAAM,CAAC;KACZ,CAAC;CACH,CAAC;AAEF,MAAM,MAAM,QAAQ,GAAG,MAAM,GAAG;IAC9B,EAAE,EAAE,MAAM,CAAC;IACX,UAAU,CAAC,EAAE,OAAO,CAAC;CACtB,CAAC;AAEF,MAAM,MAAM,SAAS,GAAG;IACtB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,gBAAgB,EAAE,MAAM,CAAC;IACzB,YAAY,CAAC,EAAE,KAAK,CAAC;IACrB,OAAO,EAAE,MAAM,EAAE,CAAC;CACnB,CAAC;AAEF,MAAM,MAAM,OAAO,GAAG;IACpB,OAAO,EAAE,QAAQ,EAAE,CAAC;IACpB,UAAU,EAAE,kBAAkB,CAAC;IAC/B,UAAU,EAAE,eAAe,CAAC;CAC7B,CAAC;AAEF,eAAO,MAAM,KAAK;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qCAiIR,CAAC"}
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package/dist/index.js
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.withUiState({
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blockTitle: 'Repertoire Diversity',
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]))
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], { includeNativeLabel: true }))
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.title((
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.title(() => 'Repertoire Diversity')
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.subtitle((ctx) => ctx.args.customBlockLabel || ctx.args.defaultBlockLabel)
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.sections((_) => [
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{ type: 'link', href: '/', label: 'Main' },
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{ type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },
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package/dist/index.js.map
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{"version":3,"file":"index.js","sources":["../src/index.ts"],"sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type {
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{"version":3,"file":"index.js","sources":["../src/index.ts"],"sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n defaultBlockLabel: string;\n customBlockLabel: string;\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n defaultBlockLabel: 'Select abundance and metrics',\n customBlockLabel: '',\n })\n\n .withUiState<UiState>({\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined\n && ctx.args.metrics.every((metric) => metric.type !== undefined))\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ], { includeNativeLabel: true }),\n )\n\n .outputWithStatus('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);\n })\n\n .outputWithStatus('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title(() => 'Repertoire Diversity')\n\n .subtitle((ctx) => ctx.args.customBlockLabel || ctx.args.defaultBlockLabel)\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n 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