@platforma-open/milaboratories.repertoire-diversity-2.model 1.4.0 → 1.5.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +14 -14
- package/CHANGELOG.md +12 -0
- package/dist/bundle.js +2668 -1784
- package/dist/bundle.js.map +1 -1
- package/dist/index.cjs +23 -9
- package/dist/index.cjs.map +1 -1
- package/dist/index.d.cts +8 -3
- package/dist/index.d.ts +8 -3
- package/dist/index.js +23 -10
- package/dist/index.js.map +1 -1
- package/dist/model.json +1 -1
- package/package.json +4 -4
- package/src/converters.ts +10 -0
- package/src/index.ts +21 -14
package/dist/index.cjs
CHANGED
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@@ -2,8 +2,29 @@
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var model$1 = require('@platforma-sdk/model');
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// src/index.ts
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// src/converters.ts
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var convertMetricsUiToArgs = (metrics) => {
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return metrics.map((metric) => {
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return {
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type: metric.type,
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downsampling: metric.downsampling
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};
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});
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};
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// src/index.ts
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var model = model$1.BlockModel.create().withArgs({
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metrics: []
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}).withUiState({
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blockTitle: "Repertoire Diversity",
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graphState: {
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title: "Repertoire Diversity",
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template: "bar",
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currentTab: null
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},
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tableState: model$1.createPlDataTableStateV2(),
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metrics: [
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{
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id: "observed",
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@@ -51,14 +72,6 @@ var model = model$1.BlockModel.create().withArgs({
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isExpanded: false
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}
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]
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}).withUiState({
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blockTitle: "Repertoire Diversity",
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graphState: {
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title: "Repertoire Diversity",
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template: "bar",
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currentTab: null
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},
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tableState: model$1.createPlDataTableStateV2()
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}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output(
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"abundanceOptions",
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(ctx) => ctx.resultPool.getOptions([
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@@ -79,7 +92,7 @@ var model = model$1.BlockModel.create().withArgs({
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if (pCols === void 0) {
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return void 0;
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}
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return model$1.createPlDataTableV2(ctx, pCols, ctx.uiState
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return model$1.createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);
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}).output("pf", (ctx) => {
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const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
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if (pCols === void 0) {
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@@ -102,6 +115,7 @@ var model = model$1.BlockModel.create().withArgs({
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{ type: "link", href: "/diversityGraph", label: "Diversity Graph" }
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]).done();
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exports.convertMetricsUiToArgs = convertMetricsUiToArgs;
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exports.model = model;
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//# sourceMappingURL=index.cjs.map
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//# sourceMappingURL=index.cjs.map
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package/dist/index.cjs.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"sources":["../src/index.ts"],"names":["BlockModel","createPlDataTableStateV2","createPlDataTableV2","createPFrameForGraphs"],"mappings":"
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{"version":3,"sources":["../src/converters.ts","../src/index.ts"],"names":["BlockModel","createPlDataTableStateV2","createPlDataTableV2","createPFrameForGraphs"],"mappings":";;;;;;;AAEa,IAAA,sBAAA,GAAyB,CAAC,OAAkC,KAAA;AACvE,EAAO,OAAA,OAAA,CAAQ,GAAI,CAAA,CAAC,MAAmB,KAAA;AACrC,IAAO,OAAA;AAAA,MACL,MAAM,MAAO,CAAA,IAAA;AAAA,MACb,cAAc,MAAO,CAAA;AAAA,KACvB;AAAA,GACD,CAAA;AACH;;;AC2BO,IAAM,KAAQ,GAAAA,kBAAA,CAAW,MAAO,EAAA,CACpC,QAAoB,CAAA;AAAA,EACnB,SAAS;AACX,CAAC,EAEA,WAAqB,CAAA;AAAA,EACpB,UAAY,EAAA,sBAAA;AAAA,EACZ,UAAY,EAAA;AAAA,IACV,KAAO,EAAA,sBAAA;AAAA,IACP,QAAU,EAAA,KAAA;AAAA,IACV,UAAY,EAAA;AAAA,GACd;AAAA,EAEA,YAAYC,gCAAyB,EAAA;AAAA,EAErC,OAAS,EAAA;AAAA,IACP;AAAA,MACE,EAAI,EAAA,UAAA;AAAA,MACJ,IAAM,EAAA,UAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA,KACd;AAAA,IACA;AAAA,MACE,EAAI,EAAA,eAAA;AAAA,MACJ,IAAM,EAAA,eAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA,KACd;AAAA,IACA;AAAA,MACE,EAAI,EAAA,OAAA;AAAA,MACJ,IAAM,EAAA,OAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA,KACd;AAAA,IACA;AAAA,MACE,EAAI,EAAA,MAAA;AAAA,MACJ,IAAM,EAAA,MAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA,KACd;AAAA,IACA;AAAA,MACE,EAAI,EAAA,KAAA;AAAA,MACJ,IAAM,EAAA,KAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA;AACd;AAEJ,CAAC,CAAA,CAEA,UAAU,CAAC,GAAA,KAAQ,IAAI,IAAK,CAAA,YAAA,KAAiB,MAAS,CAEtD,CAAA,MAAA;AAAA,EAAO,kBAAA;AAAA,EAAoB,CAAC,GAAA,KAC3B,GAAI,CAAA,UAAA,CAAW,UAAW,CAAA;AAAA,IAAC;AAAA,MACzB,IAAM,EAAA;AAAA,QACJ,EAAE,MAAM,kBAAmB,EAAA;AAAA,QAC3B;AAAE,OACJ;AAAA,MACA,WAAa,EAAA;AAAA,QACX,qBAAuB,EAAA,MAAA;AAAA,QACvB,8BAAgC,EAAA,OAAA;AAAA,QAChC,6BAA+B,EAAA;AAAA;AACjC;AACF,GACC;AACH,CAEC,CAAA,MAAA,CAAO,IAAM,EAAA,CAAC,GAAQ,KAAA;AACrB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AACtD,EAAA,IAAI,UAAU,MAAW,EAAA;AACvB,IAAO,OAAA,MAAA;AAAA;AAGT,EAAA,OAAOC,2BAAoB,CAAA,GAAA,EAAK,KAAO,EAAA,GAAA,CAAI,QAAQ,UAAU,CAAA;AAC/D,CAAC,CAEA,CAAA,MAAA,CAAO,IAAM,EAAA,CAAC,GAAQ,KAAA;AACrB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AACtD,EAAA,IAAI,UAAU,MAAW,EAAA;AACvB,IAAO,OAAA,MAAA;AAAA;AAGT,EAAO,OAAAC,6BAAA,CAAsB,KAAK,KAAK,CAAA;AACzC,CAAC,CAGA,CAAA,MAAA,CAAO,OAAS,EAAA,CAAC,GAAQ,KAAA;AACxB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AAEtD,EAAA,IAAI,KAAU,KAAA,MAAA,IAAa,KAAM,CAAA,MAAA,KAAW,CAAG,EAAA;AAC7C,IAAO,OAAA,MAAA;AAAA;AAGT,EAAA,OAAO,KAAM,CAAA,GAAA;AAAA,IACX,CAAC,CACE,MAAA;AAAA,MACC,UAAU,CAAE,CAAA,EAAA;AAAA,MACZ,MAAM,CAAE,CAAA;AAAA,KACV;AAAA,GACJ;AACF,CAAC,CAAA,CAEA,OAAO,WAAa,EAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,mBAAwB,KAAA,KAAK,EAEvE,KAAM,CAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,cAAc,sBAAsB,CAAA,CAEhE,QAAS,CAAA,CAAC,CAAM,KAAA;AAAA,EACf,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,GAAA,EAAK,OAAO,MAAO,EAAA;AAAA,EACzC,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,iBAAA,EAAmB,OAAO,iBAAkB;AACpE,CAAC,EAEA,IAAK","file":"index.cjs","sourcesContent":["import type { Metric, MetricUI } from './index';\n\nexport const convertMetricsUiToArgs = (metrics: MetricUI[]): Metric[] => {\n return metrics.map((metric): Metric => {\n return {\n type: metric.type,\n downsampling: metric.downsampling,\n };\n });\n};\n","import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n blockTitle: string;\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n })\n\n .withUiState<UiState>({\n blockTitle: 'Repertoire Diversity',\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined)\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ]),\n )\n\n .output('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
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package/dist/index.d.cts
CHANGED
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@@ -2,15 +2,19 @@ import * as _platforma_sdk_model from '@platforma-sdk/model';
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import { PlRef, PlDataTableStateV2, InferOutputsType } from '@platforma-sdk/model';
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import { GraphMakerState } from '@milaboratories/graph-maker';
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declare const convertMetricsUiToArgs: (metrics: MetricUI[]) => Metric[];
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type DiversityType = 'chao1' | 'd50' | 'efronThisted' | 'observed' | 'shannonWienerIndex' | 'shannonWiener' | 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';
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type Metric = {
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type: DiversityType | undefined;
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type?: 'none' | 'top' | 'cumtop' | 'hypergeometric';
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valueChooser?: 'min' | 'fixed' | 'max' | 'auto';
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};
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};
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type MetricUI = Metric & {
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};
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type UiState = {
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metrics: MetricUI[];
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blockTitle: string;
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tableState: PlDataTableStateV2;
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graphState: GraphMakerState;
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};
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declare const model: _platforma_sdk_model.
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declare const model: _platforma_sdk_model.PlatformaV1<BlockArgs, {
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}, UiState, "/" | "/diversityGraph">;
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export { type BlockArgs, type BlockOutputs, type DiversityType, type Metric, type UiState, model };
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export { type BlockArgs, type BlockOutputs, type DiversityType, type Metric, type MetricUI, type UiState, convertMetricsUiToArgs, model };
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package/dist/index.d.ts
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declare const convertMetricsUiToArgs: (metrics: MetricUI[]) => Metric[];
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type DiversityType = 'chao1' | 'd50' | 'efronThisted' | 'observed' | 'shannonWienerIndex' | 'shannonWiener' | 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';
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};
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declare const model: _platforma_sdk_model.
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declare const model: _platforma_sdk_model.PlatformaV1<BlockArgs, {
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export { type BlockArgs, type BlockOutputs, type DiversityType, type Metric, type UiState, model };
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export { type BlockArgs, type BlockOutputs, type DiversityType, type Metric, type MetricUI, type UiState, convertMetricsUiToArgs, model };
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package/dist/index.js
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import { BlockModel, createPlDataTableStateV2, createPlDataTableV2, createPFrameForGraphs } from '@platforma-sdk/model';
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// src/index.ts
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// src/converters.ts
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var convertMetricsUiToArgs = (metrics) => {
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return metrics.map((metric) => {
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return {
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type: metric.type,
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downsampling: metric.downsampling
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};
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});
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};
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// src/index.ts
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var model = BlockModel.create().withArgs({
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metrics: []
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}).withUiState({
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blockTitle: "Repertoire Diversity",
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graphState: {
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title: "Repertoire Diversity",
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template: "bar",
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currentTab: null
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},
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tableState: createPlDataTableStateV2(),
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metrics: [
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{
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id: "observed",
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@@ -49,14 +70,6 @@ var model = BlockModel.create().withArgs({
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isExpanded: false
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}
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]
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}).withUiState({
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blockTitle: "Repertoire Diversity",
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graphState: {
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title: "Repertoire Diversity",
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template: "bar",
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currentTab: null
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},
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tableState: createPlDataTableStateV2()
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}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output(
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(ctx) => ctx.resultPool.getOptions([
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@@ -77,7 +90,7 @@ var model = BlockModel.create().withArgs({
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}
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return createPlDataTableV2(ctx, pCols, ctx.uiState
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return createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);
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}).output("pf", (ctx) => {
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const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
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@@ -100,6 +113,6 @@ var model = BlockModel.create().withArgs({
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{ type: "link", href: "/diversityGraph", label: "Diversity Graph" }
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]).done();
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export { model };
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export { convertMetricsUiToArgs, model };
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//# sourceMappingURL=index.js.map
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|
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CHANGED
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{"version":3,"sources":["../src/index.ts"],"names":[],"mappings":";;;
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type { Metric, MetricUI } from './index';\n\nexport const convertMetricsUiToArgs = (metrics: MetricUI[]): Metric[] => {\n return metrics.map((metric): Metric => {\n return {\n type: metric.type,\n downsampling: metric.downsampling,\n };\n });\n};\n","import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport * from './converters';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type MetricUI = Metric & {\n id: string;\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n metrics: MetricUI[];\n blockTitle: string;\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n .withArgs<BlockArgs>({\n metrics: [],\n })\n\n .withUiState<UiState>({\n blockTitle: 'Repertoire Diversity',\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined)\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ]),\n )\n\n .output('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState.tableState);\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
|