@platforma-open/milaboratories.repertoire-diversity-2.model 1.3.1 → 1.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +13 -13
- package/CHANGELOG.md +6 -0
- package/dist/bundle.js +860 -725
- package/dist/bundle.js.map +1 -1
- package/dist/index.cjs +17 -13
- package/dist/index.cjs.map +1 -1
- package/dist/index.d.cts +9 -3
- package/dist/index.d.ts +9 -3
- package/dist/index.js +18 -14
- package/dist/index.js.map +1 -1
- package/dist/model.json +1 -1
- package/package.json +3 -3
- package/src/index.ts +17 -11
package/dist/index.cjs
CHANGED
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@@ -6,39 +6,49 @@ var model$1 = require('@platforma-sdk/model');
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var model = model$1.BlockModel.create().withArgs({
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metrics: [
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{
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id: "observed",
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type: "observed",
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downsampling: {
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type: "hypergeometric",
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valueChooser: "auto"
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}
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},
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isExpanded: false
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},
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{
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id: "shannonWiener",
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type: "shannonWiener",
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downsampling: {
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type: "hypergeometric",
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valueChooser: "auto"
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}
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},
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isExpanded: false
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},
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{
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id: "chao1",
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type: "chao1",
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downsampling: {
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type: "hypergeometric",
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valueChooser: "auto"
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}
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},
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isExpanded: false
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},
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{
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id: "gini",
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type: "gini",
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downsampling: {
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type: "hypergeometric",
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valueChooser: "auto"
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}
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},
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isExpanded: false
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},
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{
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id: "d50",
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type: "d50",
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downsampling: {
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type: "hypergeometric",
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valueChooser: "auto"
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}
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},
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isExpanded: false
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}
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]
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}).withUiState({
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@@ -48,13 +58,7 @@ var model = model$1.BlockModel.create().withArgs({
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template: "bar",
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currentTab: null
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},
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tableState:
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gridState: {},
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pTableParams: {
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sorting: [],
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filters: []
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}
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}
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tableState: model$1.createPlDataTableStateV2()
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}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output(
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"abundanceOptions",
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(ctx) => ctx.resultPool.getOptions([
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@@ -75,7 +79,7 @@ var model = model$1.BlockModel.create().withArgs({
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if (pCols === void 0) {
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return void 0;
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}
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return model$1.
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return model$1.createPlDataTableV2(ctx, pCols, ctx.uiState?.tableState);
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}).output("pf", (ctx) => {
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const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
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if (pCols === void 0) {
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package/dist/index.cjs.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"sources":["../src/index.ts"],"names":["BlockModel","
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{"version":3,"sources":["../src/index.ts"],"names":["BlockModel","createPlDataTableStateV2","createPlDataTableV2","createPFrameForGraphs"],"mappings":";;;;;AA8BO,IAAM,KAAQ,GAAAA,kBAAA,CAAW,MAAO,EAAA,CAEpC,QAAoB,CAAA;AAAA,EACnB,OAAS,EAAA;AAAA,IACP;AAAA,MACE,EAAI,EAAA,UAAA;AAAA,MACJ,IAAM,EAAA,UAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA,KACd;AAAA,IACA;AAAA,MACE,EAAI,EAAA,eAAA;AAAA,MACJ,IAAM,EAAA,eAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA,KACd;AAAA,IACA;AAAA,MACE,EAAI,EAAA,OAAA;AAAA,MACJ,IAAM,EAAA,OAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA,KACd;AAAA,IACA;AAAA,MACE,EAAI,EAAA,MAAA;AAAA,MACJ,IAAM,EAAA,MAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA,KACd;AAAA,IACA;AAAA,MACE,EAAI,EAAA,KAAA;AAAA,MACJ,IAAM,EAAA,KAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA,OAChB;AAAA,MACA,UAAY,EAAA;AAAA;AACd;AAEJ,CAAC,EAEA,WAAqB,CAAA;AAAA,EACpB,UAAY,EAAA,sBAAA;AAAA,EACZ,UAAY,EAAA;AAAA,IACV,KAAO,EAAA,sBAAA;AAAA,IACP,QAAU,EAAA,KAAA;AAAA,IACV,UAAY,EAAA;AAAA,GACd;AAAA,EAEA,YAAYC,gCAAyB;AACvC,CAAC,CAAA,CAEA,UAAU,CAAC,GAAA,KAAQ,IAAI,IAAK,CAAA,YAAA,KAAiB,MAAS,CAEtD,CAAA,MAAA;AAAA,EAAO,kBAAA;AAAA,EAAoB,CAAC,GAAA,KAC3B,GAAI,CAAA,UAAA,CAAW,UAAW,CAAA;AAAA,IAAC;AAAA,MACzB,IAAM,EAAA;AAAA,QACJ,EAAE,MAAM,kBAAmB,EAAA;AAAA,QAC3B;AAAE,OACJ;AAAA,MACA,WAAa,EAAA;AAAA,QACX,qBAAuB,EAAA,MAAA;AAAA,QACvB,8BAAgC,EAAA,OAAA;AAAA,QAChC,6BAA+B,EAAA;AAAA;AACjC;AACF,GACC;AACH,CAEC,CAAA,MAAA,CAAO,IAAM,EAAA,CAAC,GAAQ,KAAA;AACrB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AACtD,EAAA,IAAI,UAAU,MAAW,EAAA;AACvB,IAAO,OAAA,MAAA;AAAA;AAGT,EAAA,OAAOC,2BAAoB,CAAA,GAAA,EAAK,KAAO,EAAA,GAAA,CAAI,SAAS,UAAU,CAAA;AAChE,CAAC,CAEA,CAAA,MAAA,CAAO,IAAM,EAAA,CAAC,GAAQ,KAAA;AACrB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AACtD,EAAA,IAAI,UAAU,MAAW,EAAA;AACvB,IAAO,OAAA,MAAA;AAAA;AAGT,EAAO,OAAAC,6BAAA,CAAsB,KAAK,KAAK,CAAA;AACzC,CAAC,CAGA,CAAA,MAAA,CAAO,OAAS,EAAA,CAAC,GAAQ,KAAA;AACxB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AAEtD,EAAA,IAAI,KAAU,KAAA,MAAA,IAAa,KAAM,CAAA,MAAA,KAAW,CAAG,EAAA;AAC7C,IAAO,OAAA,MAAA;AAAA;AAGT,EAAA,OAAO,KAAM,CAAA,GAAA;AAAA,IACX,CAAC,CACE,MAAA;AAAA,MACC,UAAU,CAAE,CAAA,EAAA;AAAA,MACZ,MAAM,CAAE,CAAA;AAAA,KACV;AAAA,GACJ;AACF,CAAC,CAAA,CAEA,OAAO,WAAa,EAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,mBAAwB,KAAA,KAAK,EAEvE,KAAM,CAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,cAAc,sBAAsB,CAAA,CAEhE,QAAS,CAAA,CAAC,CAAM,KAAA;AAAA,EACf,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,GAAA,EAAK,OAAO,MAAO,EAAA;AAAA,EACzC,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,iBAAA,EAAmB,OAAO,iBAAkB;AACpE,CAAC,EAEA,IAAK","file":"index.cjs","sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n id: string;\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n blockTitle: string;\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n\n .withArgs<BlockArgs>({\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .withUiState<UiState>({\n blockTitle: 'Repertoire Diversity',\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined)\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ]),\n )\n\n .output('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState?.tableState);\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
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package/dist/index.d.cts
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import * as _platforma_sdk_model from '@platforma-sdk/model';
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import { PlRef,
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import { PlRef, PlDataTableStateV2, InferOutputsType } from '@platforma-sdk/model';
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import { GraphMakerState } from '@milaboratories/graph-maker';
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type DiversityType = 'chao1' | 'd50' | 'efronThisted' | 'observed' | 'shannonWienerIndex' | 'shannonWiener' | 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';
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type Metric = {
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id: string;
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type: DiversityType | undefined;
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downsampling: {
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type?: 'none' | 'top' | 'cumtop' | 'hypergeometric';
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valueChooser?: 'min' | 'fixed' | 'max' | 'auto';
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};
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};
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type BlockArgs = {
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};
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type UiState = {
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blockTitle: string;
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graphState: GraphMakerState;
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};
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}[]>;
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pt: _platforma_sdk_model.ValueOrErrors<
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pt: _platforma_sdk_model.ValueOrErrors<{
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sourceId: string | null;
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visibleTableHandle: _platforma_sdk_model.PTableHandle;
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} | undefined>;
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pf: _platforma_sdk_model.ValueOrErrors<_platforma_sdk_model.PFrameHandle | undefined>;
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package/dist/index.d.ts
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import { PlRef,
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import { PlRef, PlDataTableStateV2, InferOutputsType } from '@platforma-sdk/model';
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import { GraphMakerState } from '@milaboratories/graph-maker';
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type DiversityType = 'chao1' | 'd50' | 'efronThisted' | 'observed' | 'shannonWienerIndex' | 'shannonWiener' | 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';
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type Metric = {
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type: DiversityType | undefined;
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type?: 'none' | 'top' | 'cumtop' | 'hypergeometric';
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};
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pt: _platforma_sdk_model.ValueOrErrors<{
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sourceId: string | null;
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visibleTableHandle: _platforma_sdk_model.PTableHandle;
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} | undefined>;
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package/dist/index.js
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import { BlockModel,
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import { BlockModel, createPlDataTableStateV2, createPlDataTableV2, createPFrameForGraphs } from '@platforma-sdk/model';
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metrics: [
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{
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id: "observed",
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type: "observed",
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type: "hypergeometric",
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valueChooser: "auto"
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}
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id: "shannonWiener",
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type: "shannonWiener",
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downsampling: {
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type: "hypergeometric",
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}
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},
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id: "chao1",
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type: "chao1",
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downsampling: {
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type: "hypergeometric",
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valueChooser: "auto"
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25
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-
}
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30
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+
},
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+
isExpanded: false
|
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32
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},
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33
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{
|
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34
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+
id: "gini",
|
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type: "gini",
|
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downsampling: {
|
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type: "hypergeometric",
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valueChooser: "auto"
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-
}
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+
},
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+
isExpanded: false
|
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},
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{
|
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+
id: "d50",
|
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35
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|
type: "d50",
|
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36
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|
downsampling: {
|
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|
type: "hypergeometric",
|
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|
valueChooser: "auto"
|
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-
}
|
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+
},
|
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+
isExpanded: false
|
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|
}
|
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]
|
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42
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}).withUiState({
|
|
@@ -46,13 +56,7 @@ var model = BlockModel.create().withArgs({
|
|
|
46
56
|
template: "bar",
|
|
47
57
|
currentTab: null
|
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|
},
|
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-
tableState:
|
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-
gridState: {},
|
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-
pTableParams: {
|
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-
sorting: [],
|
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-
filters: []
|
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|
-
}
|
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-
}
|
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+
tableState: createPlDataTableStateV2()
|
|
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60
|
}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output(
|
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57
61
|
"abundanceOptions",
|
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|
(ctx) => ctx.resultPool.getOptions([
|
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@@ -73,7 +77,7 @@ var model = BlockModel.create().withArgs({
|
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|
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77
|
if (pCols === void 0) {
|
|
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78
|
return void 0;
|
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79
|
}
|
|
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|
-
return
|
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+
return createPlDataTableV2(ctx, pCols, ctx.uiState?.tableState);
|
|
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81
|
}).output("pf", (ctx) => {
|
|
78
82
|
const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
|
|
79
83
|
if (pCols === void 0) {
|
package/dist/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"sources":["../src/index.ts"],"names":[],"mappings":";;;
|
|
1
|
+
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type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnIdAndSpec, PlDataTableStateV2, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTableStateV2, createPlDataTableV2 } from '@platforma-sdk/model';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n id: string;\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n isExpanded?: boolean;\n};\n\nexport type BlockArgs = {\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n blockTitle: string;\n tableState: PlDataTableStateV2;\n graphState: GraphMakerState;\n};\n\nexport const model = BlockModel.create()\n\n .withArgs<BlockArgs>({\n metrics: [\n {\n id: 'observed',\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'shannonWiener',\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'chao1',\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'gini',\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n {\n id: 'd50',\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n isExpanded: false,\n },\n ],\n })\n\n .withUiState<UiState>({\n blockTitle: 'Repertoire Diversity',\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: createPlDataTableStateV2(),\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined)\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ]),\n )\n\n .output('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTableV2(ctx, pCols, ctx.uiState?.tableState);\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n // Return a list of Pcols for plot defaults\n .output('pcols', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n\n if (pCols === undefined || pCols.length === 0) {\n return undefined;\n }\n\n return pCols.map(\n (c) =>\n ({\n columnId: c.id,\n spec: c.spec,\n } satisfies PColumnIdAndSpec),\n );\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
|