@platforma-open/milaboratories.repertoire-diversity-2.model 1.1.2 → 1.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +13 -13
- package/CHANGELOG.md +6 -0
- package/dist/bundle.js +439 -369
- package/dist/bundle.js.map +1 -1
- package/dist/index.cjs +16 -6
- package/dist/index.cjs.map +1 -1
- package/dist/index.js +17 -7
- package/dist/index.js.map +1 -1
- package/dist/model.json +1 -1
- package/package.json +4 -4
- package/src/index.ts +14 -6
package/dist/index.cjs
CHANGED
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@@ -3,9 +3,6 @@
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var model$1 = require('@platforma-sdk/model');
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// src/index.ts
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function isNumericType(c) {
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return c.valueType === "Double" || c.valueType === "Int" || c.valueType === "Float" || c.valueType === "Long";
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}
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var model = model$1.BlockModel.create().withArgs({
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metrics: [
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{
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@@ -58,9 +55,22 @@ var model = model$1.BlockModel.create().withArgs({
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filters: []
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}
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}
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}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output(
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}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output(
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"abundanceOptions",
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(ctx) => ctx.resultPool.getOptions([
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{
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axes: [
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{ name: "pl7.app/sampleId" },
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{}
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],
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annotations: {
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"pl7.app/isAbundance": "true",
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"pl7.app/abundance/normalized": "false",
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"pl7.app/abundance/isPrimary": "true"
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}
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}
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])
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).output("pt", (ctx) => {
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const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
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if (pCols === void 0) {
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return void 0;
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package/dist/index.cjs.map
CHANGED
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{"version":3,"sources":["../src/index.ts"],"names":["BlockModel","
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{"version":3,"sources":["../src/index.ts"],"names":["BlockModel","createPlDataTable","createPFrameForGraphs"],"mappings":";;;;;AAgCO,IAAM,KAAQ,GAAAA,kBAAA,CAAW,MAAO,EAAA,CAEpC,QAAoB,CAAA;AAAA,EACnB,OAAS,EAAA;AAAA,IACP;AAAA,MACE,IAAM,EAAA,UAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB,KACF;AAAA,IACA;AAAA,MACE,IAAM,EAAA,eAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB,KACF;AAAA,IACA;AAAA,MACE,IAAM,EAAA,OAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB,KACF;AAAA,IACA;AAAA,MACE,IAAM,EAAA,MAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB,KACF;AAAA,IACA;AAAA,MACE,IAAM,EAAA,KAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB;AACF;AAEJ,CAAC,EAEA,WAAqB,CAAA;AAAA,EACpB,UAAY,EAAA,sBAAA;AAAA,EACZ,UAAY,EAAA;AAAA,IACV,KAAO,EAAA,sBAAA;AAAA,IACP,QAAU,EAAA,KAAA;AAAA,IACV,UAAY,EAAA;AAAA,GACd;AAAA,EAEA,UAAY,EAAA;AAAA,IACV,WAAW,EAAC;AAAA,IACZ,YAAc,EAAA;AAAA,MACZ,SAAS,EAAC;AAAA,MACV,SAAS;AAAC;AACZ;AAEJ,CAAC,CAAA,CAEA,UAAU,CAAC,GAAA,KAAQ,IAAI,IAAK,CAAA,YAAA,KAAiB,MAAS,CAEtD,CAAA,MAAA;AAAA,EAAO,kBAAA;AAAA,EAAoB,CAAC,GAAA,KAC3B,GAAI,CAAA,UAAA,CAAW,UAAW,CAAA;AAAA,IAAC;AAAA,MACzB,IAAM,EAAA;AAAA,QACJ,EAAE,MAAM,kBAAmB,EAAA;AAAA,QAC3B;AAAE,OACJ;AAAA,MACA,WAAa,EAAA;AAAA,QACX,qBAAuB,EAAA,MAAA;AAAA,QACvB,8BAAgC,EAAA,OAAA;AAAA,QAChC,6BAA+B,EAAA;AAAA;AACjC;AACF,GACC;AACH,CAEC,CAAA,MAAA,CAAO,IAAM,EAAA,CAAC,GAAQ,KAAA;AACrB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AACtD,EAAA,IAAI,UAAU,MAAW,EAAA;AACvB,IAAO,OAAA,MAAA;AAAA;AAGT,EAAA,OAAOC,yBAAkB,CAAA,GAAA,EAAK,KAAO,EAAA,GAAA,CAAI,SAAS,UAAU,CAAA;AAC9D,CAAC,CAEA,CAAA,MAAA,CAAO,IAAM,EAAA,CAAC,GAAQ,KAAA;AACrB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AACtD,EAAA,IAAI,UAAU,MAAW,EAAA;AACvB,IAAO,OAAA,MAAA;AAAA;AAGT,EAAO,OAAAC,6BAAA,CAAsB,KAAK,KAAK,CAAA;AACzC,CAAC,CAAA,CAEA,OAAO,WAAa,EAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,mBAAwB,KAAA,KAAK,EAEvE,KAAM,CAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,cAAc,sBAAsB,CAAA,CAEhE,QAAS,CAAA,CAAC,CAAM,KAAA;AAAA,EACf,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,GAAA,EAAK,OAAO,MAAO,EAAA;AAAA,EACzC,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,iBAAA,EAAmB,OAAO,iBAAkB;AACpE,CAAC,EAEA,IAAK","file":"index.cjs","sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnSpec, PlDataTableState, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTable } from '@platforma-sdk/model';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type BlockArgs = {\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n blockTitle: string;\n tableState?: PlDataTableState;\n graphState: GraphMakerState;\n};\n\nfunction isNumericType(c: PColumnSpec): boolean {\n return c.valueType === 'Double' || c.valueType === 'Int' || c.valueType === 'Float' || c.valueType === 'Long';\n}\n\nexport const model = BlockModel.create()\n\n .withArgs<BlockArgs>({\n metrics: [\n {\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n {\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n {\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n {\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n {\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n ],\n })\n\n .withUiState<UiState>({\n blockTitle: 'Repertoire Diversity',\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: {\n gridState: {},\n pTableParams: {\n sorting: [],\n filters: [],\n },\n },\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined)\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ]),\n )\n\n .output('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTable(ctx, pCols, ctx.uiState?.tableState);\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
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package/dist/index.js
CHANGED
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@@ -1,9 +1,6 @@
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import { BlockModel,
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import { BlockModel, createPlDataTable, createPFrameForGraphs } from '@platforma-sdk/model';
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// src/index.ts
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function isNumericType(c) {
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return c.valueType === "Double" || c.valueType === "Int" || c.valueType === "Float" || c.valueType === "Long";
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}
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var model = BlockModel.create().withArgs({
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{
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filters: []
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}
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}
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}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output(
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}).argsValid((ctx) => ctx.args.abundanceRef !== void 0).output(
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"abundanceOptions",
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(ctx) => ctx.resultPool.getOptions([
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{
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axes: [
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{ name: "pl7.app/sampleId" },
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{}
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],
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annotations: {
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"pl7.app/isAbundance": "true",
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"pl7.app/abundance/normalized": "false",
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"pl7.app/abundance/isPrimary": "true"
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}
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}
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])
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).output("pt", (ctx) => {
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const pCols = ctx.outputs?.resolve("pf")?.getPColumns();
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if (pCols === void 0) {
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return void 0;
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package/dist/index.js.map
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{"version":3,"sources":["../src/index.ts"],"names":[],"mappings":";;;
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{"version":3,"sources":["../src/index.ts"],"names":[],"mappings":";;;AAgCO,IAAM,KAAQ,GAAA,UAAA,CAAW,MAAO,EAAA,CAEpC,QAAoB,CAAA;AAAA,EACnB,OAAS,EAAA;AAAA,IACP;AAAA,MACE,IAAM,EAAA,UAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB,KACF;AAAA,IACA;AAAA,MACE,IAAM,EAAA,eAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB,KACF;AAAA,IACA;AAAA,MACE,IAAM,EAAA,OAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB,KACF;AAAA,IACA;AAAA,MACE,IAAM,EAAA,MAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB,KACF;AAAA,IACA;AAAA,MACE,IAAM,EAAA,KAAA;AAAA,MACN,YAAc,EAAA;AAAA,QACZ,IAAM,EAAA,gBAAA;AAAA,QACN,YAAc,EAAA;AAAA;AAChB;AACF;AAEJ,CAAC,EAEA,WAAqB,CAAA;AAAA,EACpB,UAAY,EAAA,sBAAA;AAAA,EACZ,UAAY,EAAA;AAAA,IACV,KAAO,EAAA,sBAAA;AAAA,IACP,QAAU,EAAA,KAAA;AAAA,IACV,UAAY,EAAA;AAAA,GACd;AAAA,EAEA,UAAY,EAAA;AAAA,IACV,WAAW,EAAC;AAAA,IACZ,YAAc,EAAA;AAAA,MACZ,SAAS,EAAC;AAAA,MACV,SAAS;AAAC;AACZ;AAEJ,CAAC,CAAA,CAEA,UAAU,CAAC,GAAA,KAAQ,IAAI,IAAK,CAAA,YAAA,KAAiB,MAAS,CAEtD,CAAA,MAAA;AAAA,EAAO,kBAAA;AAAA,EAAoB,CAAC,GAAA,KAC3B,GAAI,CAAA,UAAA,CAAW,UAAW,CAAA;AAAA,IAAC;AAAA,MACzB,IAAM,EAAA;AAAA,QACJ,EAAE,MAAM,kBAAmB,EAAA;AAAA,QAC3B;AAAE,OACJ;AAAA,MACA,WAAa,EAAA;AAAA,QACX,qBAAuB,EAAA,MAAA;AAAA,QACvB,8BAAgC,EAAA,OAAA;AAAA,QAChC,6BAA+B,EAAA;AAAA;AACjC;AACF,GACC;AACH,CAEC,CAAA,MAAA,CAAO,IAAM,EAAA,CAAC,GAAQ,KAAA;AACrB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AACtD,EAAA,IAAI,UAAU,MAAW,EAAA;AACvB,IAAO,OAAA,MAAA;AAAA;AAGT,EAAA,OAAO,iBAAkB,CAAA,GAAA,EAAK,KAAO,EAAA,GAAA,CAAI,SAAS,UAAU,CAAA;AAC9D,CAAC,CAEA,CAAA,MAAA,CAAO,IAAM,EAAA,CAAC,GAAQ,KAAA;AACrB,EAAA,MAAM,QAAQ,GAAI,CAAA,OAAA,EAAS,OAAQ,CAAA,IAAI,GAAG,WAAY,EAAA;AACtD,EAAA,IAAI,UAAU,MAAW,EAAA;AACvB,IAAO,OAAA,MAAA;AAAA;AAGT,EAAO,OAAA,qBAAA,CAAsB,KAAK,KAAK,CAAA;AACzC,CAAC,CAAA,CAEA,OAAO,WAAa,EAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,mBAAwB,KAAA,KAAK,EAEvE,KAAM,CAAA,CAAC,QAAQ,GAAI,CAAA,OAAA,EAAS,cAAc,sBAAsB,CAAA,CAEhE,QAAS,CAAA,CAAC,CAAM,KAAA;AAAA,EACf,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,GAAA,EAAK,OAAO,MAAO,EAAA;AAAA,EACzC,EAAE,IAAM,EAAA,MAAA,EAAQ,IAAM,EAAA,iBAAA,EAAmB,OAAO,iBAAkB;AACpE,CAAC,EAEA,IAAK","file":"index.js","sourcesContent":["import type { GraphMakerState } from '@milaboratories/graph-maker';\nimport type { InferOutputsType, PColumnSpec, PlDataTableState, PlRef } from '@platforma-sdk/model';\nimport { BlockModel, createPFrameForGraphs, createPlDataTable } from '@platforma-sdk/model';\n\nexport type DiversityType = 'chao1' | 'd50' | 'efronThisted' |\n 'observed' | 'shannonWienerIndex' | 'shannonWiener' |\n 'normalizedShannonWiener' | 'inverseSimpson' | 'gini';\n\nexport type Metric = {\n type: DiversityType | undefined;\n downsampling: {\n type?: 'none' | 'top' | 'cumtop' | 'hypergeometric' ;\n valueChooser?: 'min' | 'fixed' | 'max' | 'auto';\n n?: number;\n };\n};\n\nexport type BlockArgs = {\n abundanceRef?: PlRef;\n metrics: Metric[];\n};\n\nexport type UiState = {\n blockTitle: string;\n tableState?: PlDataTableState;\n graphState: GraphMakerState;\n};\n\nfunction isNumericType(c: PColumnSpec): boolean {\n return c.valueType === 'Double' || c.valueType === 'Int' || c.valueType === 'Float' || c.valueType === 'Long';\n}\n\nexport const model = BlockModel.create()\n\n .withArgs<BlockArgs>({\n metrics: [\n {\n type: 'observed',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n {\n type: 'shannonWiener',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n {\n type: 'chao1',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n {\n type: 'gini',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n {\n type: 'd50',\n downsampling: {\n type: 'hypergeometric',\n valueChooser: 'auto',\n },\n },\n ],\n })\n\n .withUiState<UiState>({\n blockTitle: 'Repertoire Diversity',\n graphState: {\n title: 'Repertoire Diversity',\n template: 'bar',\n currentTab: null,\n },\n\n tableState: {\n gridState: {},\n pTableParams: {\n sorting: [],\n filters: [],\n },\n },\n })\n\n .argsValid((ctx) => ctx.args.abundanceRef !== undefined)\n\n .output('abundanceOptions', (ctx) =>\n ctx.resultPool.getOptions([{\n axes: [\n { name: 'pl7.app/sampleId' },\n { },\n ],\n annotations: {\n 'pl7.app/isAbundance': 'true',\n 'pl7.app/abundance/normalized': 'false',\n 'pl7.app/abundance/isPrimary': 'true',\n },\n },\n ]),\n )\n\n .output('pt', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPlDataTable(ctx, pCols, ctx.uiState?.tableState);\n })\n\n .output('pf', (ctx) => {\n const pCols = ctx.outputs?.resolve('pf')?.getPColumns();\n if (pCols === undefined) {\n return undefined;\n }\n\n return createPFrameForGraphs(ctx, pCols);\n })\n\n .output('isRunning', (ctx) => ctx.outputs?.getIsReadyOrError() === false)\n\n .title((ctx) => ctx.uiState?.blockTitle ?? 'Repertoire Diversity')\n\n .sections((_) => [\n { type: 'link', href: '/', label: 'Main' },\n { type: 'link', href: '/diversityGraph', label: 'Diversity Graph' },\n ])\n\n .done();\n\nexport type BlockOutputs = InferOutputsType<typeof model>;\n"]}
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