@platforma-open/milaboratories.rarefaction.workflow 1.1.8 → 1.1.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/rarefaction/rarefaction/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.rarefaction.workflow@1.1.
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> @platforma-open/milaboratories.rarefaction.workflow@1.1.9 build /home/runner/work/rarefaction/rarefaction/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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Processing "src/main.tpl.tengo"...
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package/CHANGELOG.md
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# @platforma-open/milaboratories.rarefaction.workflow
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## 1.1.9
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### Patch Changes
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- 0075c7e: Propagate user memory setting to TSV builder to prevent OOM on large datasets
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- 1573d0e: Update SDK dependencies to latest versions
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## 1.1.8
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### Patch Changes
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Binary file
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Binary file
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package/package.json
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@@ -1,14 +1,14 @@
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{
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"name": "@platforma-open/milaboratories.rarefaction.workflow",
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"version": "1.1.
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"version": "1.1.9",
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"type": "module",
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"description": "Tengo-based template",
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "5.
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"@platforma-sdk/workflow-tengo": "5.11.0",
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"@platforma-open/milaboratories.rarefaction.software": "1.2.6"
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},
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"devDependencies": {
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"@platforma-sdk/tengo-builder": "2.
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"@platforma-sdk/tengo-builder": "2.5.5"
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},
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"scripts": {
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"build": "rm -rf dist && pl-tengo check && pl-tengo build",
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package/src/main.tpl.tengo
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@@ -100,7 +100,11 @@ wf.prepare(func(args) {
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wf.body(func(args) {
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datasetSpec := args.columns.getSpec(args.datasetRef)
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convMem := string(args.mem) + "GiB"
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tsvBuilder := pframes.tsvFileBuilder()
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tsvBuilder.mem(convMem)
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tsvBuilder.cpu(1)
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tsvBuilder.add(args.columns.getColumn("abundance"), {header: "abundance"})
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tsvBuilder.setAxisHeader(datasetSpec.axesSpec[1].name, "clonotypeKey")
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tsv := tsvBuilder.build()
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