@platforma-open/milaboratories.mixcr-shm-trees.workflow 4.2.7 → 4.2.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +12 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-shm-trees.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/request-library.plj.gz +0 -0
- package/dist/tengo/tpl/soi.plj.gz +0 -0
- package/package.json +4 -4
- package/src/mixcr-export.tpl.tengo +0 -3
- package/src/mixcr-shm-trees.tpl.tengo +2 -0
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/mixcr-shm-trees/mixcr-shm-trees/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-shm-trees.workflow@4.2.
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> @platforma-open/milaboratories.mixcr-shm-trees.workflow@4.2.9 build /home/runner/work/mixcr-shm-trees/mixcr-shm-trees/workflow
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> shx rm -rf dist && pl-tengo check && pl-tengo build
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Processing "src/export-settings.lib.tengo"...
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package/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-shm-trees.workflow
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## 4.2.9
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### Patch Changes
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- be7d5ac: Fix broken block after workflow-tengo update
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## 4.2.8
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### Patch Changes
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- d5bdf1f: Upgrade MiXCR to 4.7.0-303-develop — fix serialization hang in findShmTrees on large datasets
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## 4.2.7
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### Patch Changes
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Binary file
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Binary file
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Binary file
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Binary file
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Binary file
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package/package.json
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{
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"name": "@platforma-open/milaboratories.mixcr-shm-trees.workflow",
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"version": "4.2.
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"version": "4.2.9",
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"type": "module",
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"description": "Tengo-based template",
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"//": {
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"build": "node ./scripts/build-static.mjs src/pfconv_params.json src/pfconv_params.lib.tengo && shx rm -rf dist && pl-tengo check && pl-tengo build && ./create_tags.sh"
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},
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "^5.
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"@platforma-sdk/workflow-tengo": "^5.26.0"
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},
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"devDependencies": {
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"@platforma-sdk/tengo-builder": "
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-
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"@platforma-sdk/tengo-builder": "4.0.10",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-303-develop",
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"@platforma-open/milaboratories.software-mitool": "2.3.1-24-main",
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"@platforma-open/milaboratories.software-ptransform": "^1.6.6",
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"@platforma-sdk/test": "^1.45.11",
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@@ -47,7 +47,6 @@ self.body(func(inputs) {
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// export trees without nodes
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shmTreeExportsCmdBuilder := exec.builder().
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printErrStreamToStdout().
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dontSaveStdoutOrStderr().
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inLightQueue().
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secret("MI_LICENSE", "MI_LICENSE").
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env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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@@ -83,7 +82,6 @@ self.body(func(inputs) {
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// export tree nodes with data uniq for the node
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shmTreeNodesExportsCmdBuilder := exec.builder().
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printErrStreamToStdout().
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dontSaveStdoutOrStderr().
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inLightQueue().
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secret("MI_LICENSE", "MI_LICENSE").
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env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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@@ -119,7 +117,6 @@ self.body(func(inputs) {
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// export nodes with clones. For each node could be several clones
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shmTreeNodesWithClonesExportsCmdBuilder := exec.builder().
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printErrStreamToStdout().
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dontSaveStdoutOrStderr().
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inLightQueue().
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secret("MI_LICENSE", "MI_LICENSE").
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env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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allelesCmdBuilder := exec.builder().
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printErrStreamToStdout().
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saveStdoutStream().
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secret("MI_LICENSE", "MI_LICENSE").
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env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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env("MI_PROGRESS_PREFIX", progressPrefix).
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shmTreesCmdBuilder := exec.builder().
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printErrStreamToStdout().
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saveStdoutStream().
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secret("MI_LICENSE", "MI_LICENSE").
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env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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env("MI_PROGRESS_PREFIX", progressPrefix).
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