@platforma-open/milaboratories.mixcr-shm-trees.workflow 4.2.5 → 4.2.7

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Files changed (11) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +12 -0
  3. package/dist/tengo/tpl/main.plj.gz +0 -0
  4. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  5. package/dist/tengo/tpl/mixcr-shm-trees.plj.gz +0 -0
  6. package/dist/tengo/tpl/process.plj.gz +0 -0
  7. package/dist/tengo/tpl/request-library.plj.gz +0 -0
  8. package/dist/tengo/tpl/soi.plj.gz +0 -0
  9. package/package.json +2 -2
  10. package/src/mixcr-export.tpl.tengo +3 -0
  11. package/src/mixcr-shm-trees.tpl.tengo +3 -0
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-shm-trees/mixcr-shm-trees/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-shm-trees.workflow@4.2.5 build /home/runner/work/mixcr-shm-trees/mixcr-shm-trees/workflow
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+ > @platforma-open/milaboratories.mixcr-shm-trees.workflow@4.2.7 build /home/runner/work/mixcr-shm-trees/mixcr-shm-trees/workflow
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  > shx rm -rf dist && pl-tengo check && pl-tengo build
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  Processing "src/export-settings.lib.tengo"...
package/CHANGELOG.md CHANGED
@@ -1,5 +1,17 @@
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  # @platforma-open/milaboratories.mixcr-shm-trees.workflow
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+ ## 4.2.7
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+
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+ ### Patch Changes
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+
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+ - 59e546a: Upgrade MiXCR to 4.7.0-302-develop
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+
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+ ## 4.2.6
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+
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+ ### Patch Changes
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+
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+ - 0b5ed95: Upgrade MiXCR to 4.7.0-300-develop, add MI_LICENSE_DEBUG env to all MiXCR processes
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+
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  ## 4.2.5
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  ### Patch Changes
package/dist/tengo/tpl/main.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/process.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/soi.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-shm-trees.workflow",
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- "version": "4.2.5",
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+ "version": "4.2.7",
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  "type": "module",
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  "description": "Tengo-based template",
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  "//": {
@@ -11,7 +11,7 @@
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  },
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  "devDependencies": {
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  "@platforma-sdk/tengo-builder": "^2.3.3",
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- "@platforma-open/milaboratories.software-mixcr": "4.7.0-299-develop",
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+ "@platforma-open/milaboratories.software-mixcr": "4.7.0-302-develop",
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  "@platforma-open/milaboratories.software-mitool": "2.3.1-24-main",
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  "@platforma-open/milaboratories.software-ptransform": "^1.6.6",
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  "@platforma-sdk/test": "^1.45.11",
package/src/mixcr-export.tpl.tengo CHANGED
@@ -50,6 +50,7 @@ self.body(func(inputs) {
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  dontSaveStdoutOrStderr().
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  inLightQueue().
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  secret("MI_LICENSE", "MI_LICENSE").
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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  software(mixcrSw).
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  arg("exportShmTrees").
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  env("CIDADHOC", "1234").
@@ -85,6 +86,7 @@ self.body(func(inputs) {
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  dontSaveStdoutOrStderr().
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  inLightQueue().
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  secret("MI_LICENSE", "MI_LICENSE").
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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  software(mixcrSw).
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  arg("exportShmTreesWithNodes").
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  env("CIDADHOC", "1234").
@@ -120,6 +122,7 @@ self.body(func(inputs) {
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  dontSaveStdoutOrStderr().
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  inLightQueue().
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  secret("MI_LICENSE", "MI_LICENSE").
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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  software(mixcrSw).
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  arg("exportShmTreesWithNodes").
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  // don't export nodes that don't have clones
package/src/mixcr-shm-trees.tpl.tengo CHANGED
@@ -57,6 +57,7 @@ self.body(func(inputs) {
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  allelesCmdBuilder := exec.builder().
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  printErrStreamToStdout().
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  secret("MI_LICENSE", "MI_LICENSE").
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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  env("MI_PROGRESS_PREFIX", progressPrefix).
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  // env("SEED", seed).
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  software(mixcrSw).
@@ -141,6 +142,7 @@ self.body(func(inputs) {
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  downsamplingCmdBuilder := exec.builder().
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  printErrStreamToStdout().
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  secret("MI_LICENSE", "MI_LICENSE").
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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  env("MI_PROGRESS_PREFIX", progressPrefix).
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  software(mixcrSw).
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  arg("downsample").
@@ -177,6 +179,7 @@ self.body(func(inputs) {
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  shmTreesCmdBuilder := exec.builder().
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  printErrStreamToStdout().
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  secret("MI_LICENSE", "MI_LICENSE").
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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  env("MI_PROGRESS_PREFIX", progressPrefix).
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  software(mixcrSw).
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  arg("findShmTrees").