@platforma-open/milaboratories.mixcr-shm-trees.workflow 4.2.2 → 4.2.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +14 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-shm-trees.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/request-library.plj.gz +0 -0
- package/dist/tengo/tpl/soi.plj.gz +0 -0
- package/package.json +2 -2
- package/src/mixcr-shm-trees.tpl.tengo +3 -1
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/mixcr-shm-trees/mixcr-shm-trees/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-shm-trees.workflow@4.2.
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> @platforma-open/milaboratories.mixcr-shm-trees.workflow@4.2.4 build /home/runner/work/mixcr-shm-trees/mixcr-shm-trees/workflow
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> shx rm -rf dist && pl-tengo check && pl-tengo build
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Processing "src/export-settings.lib.tengo"...
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package/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-shm-trees.workflow
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## 4.2.4
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### Patch Changes
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- 17e9000: Use --use-local-temp for findAlleles and findShmTrees to place temporary files in the working directory instead of /tmp, preventing silent hangs when system temp runs out of disk space
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## 4.2.3
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### Patch Changes
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- 0f0582f: Upgrade MiXCR to 4.7.0-297-develop
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- Fix duplicate RootInfo crash (`RootInfos should be uniq in all trees`) in findShmTrees with legacy data
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## 4.2.2
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### Patch Changes
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package/package.json
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{
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"name": "@platforma-open/milaboratories.mixcr-shm-trees.workflow",
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"version": "4.2.
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"version": "4.2.4",
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"type": "module",
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"description": "Tengo-based template",
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"//": {
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},
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"devDependencies": {
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"@platforma-sdk/tengo-builder": "^2.3.3",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-298-develop",
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"@platforma-open/milaboratories.software-mitool": "2.3.1-24-main",
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"@platforma-open/milaboratories.software-ptransform": "^1.6.6",
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"@platforma-sdk/test": "^1.45.11",
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//tengo:hash_override
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//tengo:hash_override C034616E-1E9D-4A20-B27F-5F6D87655360
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self := import("@platforma-sdk/workflow-tengo:tpl")
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pConstants := import("@platforma-sdk/workflow-tengo:pframes.constants")
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@@ -61,6 +61,7 @@ self.body(func(inputs) {
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// env("SEED", seed).
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software(mixcrSw).
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arg("findAlleles").
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arg("--use-local-temp").
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arg("--report").arg("report.txt").
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saveFile("report.txt").
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arg("--json-report").arg("report.json").
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env("MI_PROGRESS_PREFIX", progressPrefix).
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software(mixcrSw).
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arg("findShmTrees").
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arg("--use-local-temp").
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arg("--report").arg("report.txt").
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saveFile("report.txt").
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arg("--json-report").arg("report.json").
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