@platforma-open/milaboratories.mixcr-shm-trees.workflow 3.8.1 → 3.9.0

package/.turbo/turbo-build.log

@@ -1,6 +1,6 @@
  WARN  Issue while reading "/home/runner/work/mixcr-shm-trees/mixcr-shm-trees/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.mixcr-shm-trees.workflow@3.8.1 build /home/runner/work/mixcr-shm-trees/mixcr-shm-trees/workflow
+> @platforma-open/milaboratories.mixcr-shm-trees.workflow@3.9.0 build /home/runner/work/mixcr-shm-trees/mixcr-shm-trees/workflow
 > rm -rf dist && pl-tengo check && pl-tengo build
 
 Processing "src/export-settings.lib.tengo"...

package/CHANGELOG.md

@@ -1,5 +1,11 @@
 # @platforma-open/milaboratories.mixcr-shm-trees.workflow
 
+## 3.9.0
+
+### Minor Changes
+
+- 1ba80e7: Fix for basket feature with new axis structure
+
 ## 3.8.1
 
 ### Patch Changes

package/dist/tengo/lib/export-settings.lib.tengo

@@ -717,6 +717,21 @@ shmTreeNodesWithClones := func(dataDescription, donorColumn) {
         }
     })
 
+    cmdArgs = append(cmdArgs, "-cloneId")
+    axes = append(axes, {
+        column: "cloneId",
+        id: "clone-id",
+
+
+        filterOutRegex: "^$",
+        spec: {
+            name: "pl7.app/vdj/cloneId",
+            type: "Long",
+
+            annotations: addTableAnnotations(70000, true, "Clone id", {})
+        }
+    })
+
     cmdArgs = append(cmdArgs, "-fileName")
     axes = append(axes, {
         column: "fileName",
@@ -735,21 +750,6 @@ shmTreeNodesWithClones := func(dataDescription, donorColumn) {
         })
     })
 
-    cmdArgs = append(cmdArgs, "-cloneId")
-    axes = append(axes, {
-        column: "cloneId",
-        id: "clone-id",
-
-
-        filterOutRegex: "^$",
-        spec: {
-            name: "pl7.app/vdj/cloneId",
-            type: "Long",
-
-            annotations: addTableAnnotations(70000, true, "Clone id", {})
-        }
-    })
-
     if dataDescription.hasCellTags {
         cmdArgs = append(cmdArgs, "-uniqueTagCount", "Cell")
         columns = append(columns, {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.mixcr-shm-trees.workflow",
-  "version": "3.8.1",
+  "version": "3.9.0",
   "type": "module",
   "description": "Tengo-based template",
   "//": {

package/src/export-settings.lib.tengo

@@ -717,6 +717,21 @@ shmTreeNodesWithClones := func(dataDescription, donorColumn) {
         }
     })
 
+    cmdArgs = append(cmdArgs, "-cloneId")
+    axes = append(axes, {
+        column: "cloneId",
+        id: "clone-id",
+        // allowNA: true,
+        // filtering off records without clones because we are not interested in them here
+        filterOutRegex: "^$",
+        spec: {
+            name: "pl7.app/vdj/cloneId",
+            type: "Long",
+            // TODO domain with blockId
+            annotations: addTableAnnotations(70000, true, "Clone id", {})
+        }
+    })
+
     cmdArgs = append(cmdArgs, "-fileName")
     axes = append(axes, {
         column: "fileName",
@@ -735,21 +750,6 @@ shmTreeNodesWithClones := func(dataDescription, donorColumn) {
         })
     })
 
-    cmdArgs = append(cmdArgs, "-cloneId")
-    axes = append(axes, {
-        column: "cloneId",
-        id: "clone-id",
-        // allowNA: true,
-        // filtering off records without clones because we are not interested in them here
-        filterOutRegex: "^$",
-        spec: {
-            name: "pl7.app/vdj/cloneId",
-            type: "Long",
-            // TODO domain with blockId
-            annotations: addTableAnnotations(70000, true, "Clone id", {})
-        }
-    })
-
     if dataDescription.hasCellTags {
         cmdArgs = append(cmdArgs, "-uniqueTagCount", "Cell")
         columns = append(columns, {