@platforma-open/milaboratories.mixcr-shm-trees.workflow 3.4.0 → 3.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (9) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +6 -0
  3. package/dist/tengo/lib/export-settings.lib.tengo +13 -0
  4. package/dist/tengo/tpl/main.plj.gz +0 -0
  5. package/dist/tengo/tpl/process.plj.gz +0 -0
  6. package/dist/tengo/tpl/reconstruct-shm-trees.plj.gz +0 -0
  7. package/dist/tengo/tpl/soi.plj.gz +0 -0
  8. package/package.json +6 -6
  9. package/src/export-settings.lib.tengo +13 -0
package/.turbo/turbo-build.log CHANGED
@@ -1,5 +1,5 @@
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- > @platforma-open/milaboratories.mixcr-shm-trees.workflow@3.4.0 build /home/runner/work/mixcr-shm-trees/mixcr-shm-trees/workflow
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+ > @platforma-open/milaboratories.mixcr-shm-trees.workflow@3.5.0 build /home/runner/work/mixcr-shm-trees/mixcr-shm-trees/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  Processing "src/export-settings.lib.tengo"...
package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.mixcr-shm-trees.workflow
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+ ## 3.5.0
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+
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+ ### Minor Changes
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+
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+ - 591630e: Descrete columns annotation
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+
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  ## 3.4.0
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  ### Minor Changes
package/dist/tengo/lib/export-settings.lib.tengo CHANGED
@@ -149,6 +149,7 @@ shmTreeTableOptions := func(dataDescription) {
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  annotations: {
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  type: "V gene name",
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  "pl7.app/label": "V gene",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "30000"
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  }
@@ -169,6 +170,7 @@ shmTreeTableOptions := func(dataDescription) {
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  annotations: {
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  type: "J gene name",
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  "pl7.app/label": "J gene",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "29000"
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  }
@@ -185,6 +187,8 @@ shmTreeTableOptions := func(dataDescription) {
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  name: "pl7.app/vdj/chain",
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  annotations: {
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  "pl7.app/label": "Chain",
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+ "pl7.app/isDiscreteFilter": "true",
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+ "pl7.app/discreteValues": "['TRA', 'TRB', 'TRG', 'TRD', 'IGH', 'IGK', 'IGL']",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "40000"
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  }
@@ -361,6 +365,8 @@ shmTreeNodesTableOptions := func(dataDescription) {
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  valueType: "String",
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  annotations: {
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  "pl7.app/label": "Is observed in data",
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+ "pl7.app/isDiscreteFilter": "true",
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+ "pl7.app/discreteValues": "['true', 'false']",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "85000"
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  }
@@ -672,6 +678,7 @@ shmTreeNodesTableOptions := func(dataDescription) {
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  annotations: {
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  type: "V gene name",
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  "pl7.app/label": "V gene",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "49000"
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  }
@@ -692,6 +699,7 @@ shmTreeNodesTableOptions := func(dataDescription) {
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  annotations: {
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  type: "J gene name",
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  "pl7.app/label": "J gene",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "47000"
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  }
@@ -874,6 +882,7 @@ shmTreeNodesWithClonesTableOptions := func(dataDescription, donorColumn) {
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  spec: donorColumnSpec.axesSpec[0],
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  annotations: {
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  "pl7.app/label": "Sample name",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "110000"
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  }
@@ -980,6 +989,7 @@ shmTreeNodesWithClonesTableOptions := func(dataDescription, donorColumn) {
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  annotations: {
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  type: "D gene name",
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  "pl7.app/label": "Best D hit",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "48000"
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  }
@@ -1000,6 +1010,7 @@ shmTreeNodesWithClonesTableOptions := func(dataDescription, donorColumn) {
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  annotations: {
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  type: "C gene name",
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  "pl7.app/label": "Best C hit",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "46000"
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  }
@@ -1016,6 +1027,7 @@ shmTreeNodesWithClonesTableOptions := func(dataDescription, donorColumn) {
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  name: "pl7.app/vdj/isotype",
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  annotations: {
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  "pl7.app/label": "IG isotype",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "50000"
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  }
@@ -1106,6 +1118,7 @@ shmTreeNodesUniqueIsotypeTableOptions := func(dataDescription) {
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  name: "pl7.app/vdj/isotype",
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  annotations: {
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  "pl7.app/label": "Top IG isotype",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "optional",
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  "pl7.app/table/orderPriority": "50000"
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  }
package/dist/tengo/tpl/main.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/process.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/soi.plj.gz CHANGED
Binary file
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-shm-trees.workflow",
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- "version": "3.4.0",
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+ "version": "3.5.0",
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  "type": "module",
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  "description": "Tengo-based template",
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  "//": {
@@ -8,13 +8,13 @@
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  },
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  "devDependencies": {
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  "@platforma-sdk/tengo-builder": "^1.17.5",
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- "@platforma-sdk/workflow-tengo": "^2.9.9",
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- "@milaboratories/software-pframes-conv": "^2.1.8",
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- "@platforma-open/milaboratories.software-small-binaries": "^1.15.6",
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+ "@platforma-sdk/workflow-tengo": "^2.11.0",
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+ "@milaboratories/software-pframes-conv": "^2.1.9",
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+ "@platforma-open/milaboratories.software-small-binaries": "^1.15.7",
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  "@platforma-open/milaboratories.software-mixcr": "4.7.0-139-develop",
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  "@platforma-open/milaboratories.software-mitool": "2.3.1-5-main",
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- "@platforma-open/milaboratories.software-ptransform": "^1.1.0",
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- "@platforma-sdk/test": "^1.22.6",
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+ "@platforma-open/milaboratories.software-ptransform": "^1.1.1",
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+ "@platforma-sdk/test": "^1.22.40",
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  "vitest": "^2.1.8",
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  "typescript": "~5.6.3"
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  },
package/src/export-settings.lib.tengo CHANGED
@@ -149,6 +149,7 @@ shmTreeTableOptions := func(dataDescription) {
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  annotations: {
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  type: "V gene name",
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  "pl7.app/label": "V gene",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "30000"
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  }
@@ -169,6 +170,7 @@ shmTreeTableOptions := func(dataDescription) {
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  annotations: {
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  type: "J gene name",
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  "pl7.app/label": "J gene",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "29000"
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  }
@@ -185,6 +187,8 @@ shmTreeTableOptions := func(dataDescription) {
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  name: "pl7.app/vdj/chain",
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  annotations: {
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  "pl7.app/label": "Chain",
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+ "pl7.app/isDiscreteFilter": "true",
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+ "pl7.app/discreteValues": "['TRA', 'TRB', 'TRG', 'TRD', 'IGH', 'IGK', 'IGL']",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "40000"
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  }
@@ -361,6 +365,8 @@ shmTreeNodesTableOptions := func(dataDescription) {
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  valueType: "String",
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  annotations: {
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  "pl7.app/label": "Is observed in data",
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+ "pl7.app/isDiscreteFilter": "true",
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+ "pl7.app/discreteValues": "['true', 'false']",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "85000"
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  }
@@ -672,6 +678,7 @@ shmTreeNodesTableOptions := func(dataDescription) {
672
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  annotations: {
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  type: "V gene name",
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  "pl7.app/label": "V gene",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "49000"
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  }
@@ -692,6 +699,7 @@ shmTreeNodesTableOptions := func(dataDescription) {
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  annotations: {
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  type: "J gene name",
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  "pl7.app/label": "J gene",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "47000"
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  }
@@ -874,6 +882,7 @@ shmTreeNodesWithClonesTableOptions := func(dataDescription, donorColumn) {
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  spec: donorColumnSpec.axesSpec[0],
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  annotations: {
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  "pl7.app/label": "Sample name",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "110000"
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  }
@@ -980,6 +989,7 @@ shmTreeNodesWithClonesTableOptions := func(dataDescription, donorColumn) {
980
989
  annotations: {
981
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  type: "D gene name",
982
991
  "pl7.app/label": "Best D hit",
992
+ "pl7.app/isDiscreteFilter": "true",
983
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  "pl7.app/table/visibility": "default",
984
994
  "pl7.app/table/orderPriority": "48000"
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  }
@@ -1000,6 +1010,7 @@ shmTreeNodesWithClonesTableOptions := func(dataDescription, donorColumn) {
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  annotations: {
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  type: "C gene name",
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  "pl7.app/label": "Best C hit",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "46000"
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  }
@@ -1016,6 +1027,7 @@ shmTreeNodesWithClonesTableOptions := func(dataDescription, donorColumn) {
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  name: "pl7.app/vdj/isotype",
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  annotations: {
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  "pl7.app/label": "IG isotype",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "default",
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  "pl7.app/table/orderPriority": "50000"
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  }
@@ -1106,6 +1118,7 @@ shmTreeNodesUniqueIsotypeTableOptions := func(dataDescription) {
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  name: "pl7.app/vdj/isotype",
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  annotations: {
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  "pl7.app/label": "Top IG isotype",
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+ "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/table/visibility": "optional",
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  "pl7.app/table/orderPriority": "50000"
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  }