@platforma-open/milaboratories.mixcr-library-builder.workflow 1.2.0 → 1.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +2 -2
- package/CHANGELOG.md +7 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/package.json +6 -9
- package/src/main.tpl.tengo +10 -5
- package/src/wf.test.ts +0 -13
- package/vitest.config.mts +0 -9
package/.turbo/turbo-build.log
CHANGED
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/mixcr-library-builder/mixcr-library-builder/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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-
> @platforma-open/milaboratories.mixcr-library-builder.workflow@1.
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> @platforma-open/milaboratories.mixcr-library-builder.workflow@1.3.0 build /home/runner/work/mixcr-library-builder/mixcr-library-builder/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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Processing "src/formatText.lib.tengo"...
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@@ -9,5 +9,5 @@ No syntax errors found.
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info: Compiling 'dist'...
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info: - writing /home/runner/work/mixcr-library-builder/mixcr-library-builder/workflow/dist/tengo/lib/formatText.lib.tengo
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info: - writing /home/runner/work/mixcr-library-builder/mixcr-library-builder/workflow/dist/tengo/tpl/main.plj.gz
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info:
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info: Template Pack build done.
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info: Template Pack build done.
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package/CHANGELOG.md
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Binary file
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package/package.json
CHANGED
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@@ -1,20 +1,17 @@
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{
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"name": "@platforma-open/milaboratories.mixcr-library-builder.workflow",
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"version": "1.
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"version": "1.3.0",
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"type": "module",
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"description": "Block Workflow",
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"dependencies": {
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "^4.1.4"
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},
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"devDependencies": {
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"@platforma-sdk/tengo-builder": "^1.
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"@platforma-
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"@platforma-open/milaboratories.software-small-binaries": "^1.15.6",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-139-develop",
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"@platforma-sdk/test": "^1.22.49",
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"vitest": "^3.0.5"
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"@platforma-sdk/tengo-builder": "^2.1.3",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-139-develop"
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},
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"scripts": {
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"build": "rm -rf dist && pl-tengo check && pl-tengo build",
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"test": "vitest",
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"format": "/usr/bin/env emacs --script ./format.el"
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}
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}
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package/src/main.tpl.tengo
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@@ -15,13 +15,13 @@ toCamelCase := import(":formatText")
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wf.body(func(args) {
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blockId := wf.blockId().getDataAsJson()
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if is_undefined(args.vFastaFile) && is_undefined(args.vSpecies) {
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ll.panic("expected to have either `fastaFile` or `built in`; provided no any")
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}
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if is_undefined(args.jFastaFile) && is_undefined(args.jSpecies) {
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ll.panic("expected to have either `fastaFile` or `built in`; provided no any")
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}
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@@ -82,7 +82,7 @@ wf.body(func(args) {
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saveFile("library.json").
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printErrStreamToStdout()
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libraryBuilderCmd := libraryBuilderCmdBuilder.run()
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debugOutput := libraryBuilderCmd.getStdoutStream()
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library := libraryBuilderCmd.getFile("library.json")
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@@ -93,16 +93,21 @@ wf.body(func(args) {
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data: library,
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spec: {
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kind: "File",
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name: "pl7.app/vdj/library",
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domain: {
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"pl7.app/vdj/libraryId": blockId
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},
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annotations: {
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"pl7.app/species": cmdSpecies,
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"pl7.app/vdj/chain": chain,
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"pl7.app/vdj/isLibrary": "true",
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"pl7.app/vdj/libraryFormat": "repseqio.json",
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"pl7.app/label": text.split(species, "_custom")[0] + " " + chain + " library"
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}
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}
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}
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}
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}
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return {
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outputs: outputs,
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exports: exports
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package/src/wf.test.ts
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import { tplTest } from "@platforma-sdk/test";
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tplTest(
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'should return a concatenated string',
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async ({ helper, expect }) => {
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const results = await helper.renderWorkflow("main", false, {
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name: 'World'
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});
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const tengoMessage = results.output("tengoMessage", (a) => a?.getDataAsJson<string>());
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expect(await tengoMessage.awaitStableValue()).eq('Hello from Tengo, World!');
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}
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);
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