@platforma-open/milaboratories.mixcr-library-builder.workflow 1.0.2 → 1.2.0

package/.turbo/turbo-build.log

@@ -1,11 +1,13 @@
  WARN  Issue while reading "/home/runner/work/mixcr-library-builder/mixcr-library-builder/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.mixcr-library-builder.workflow@1.0.2 build /home/runner/work/mixcr-library-builder/mixcr-library-builder/workflow
+> @platforma-open/milaboratories.mixcr-library-builder.workflow@1.2.0 build /home/runner/work/mixcr-library-builder/mixcr-library-builder/workflow
 > rm -rf dist && pl-tengo check && pl-tengo build
 
+Processing "src/formatText.lib.tengo"...
 Processing "src/main.tpl.tengo"...
 No syntax errors found.
   info: Compiling 'dist'...
+  info:   - writing /home/runner/work/mixcr-library-builder/mixcr-library-builder/workflow/dist/tengo/lib/formatText.lib.tengo
   info:   - writing /home/runner/work/mixcr-library-builder/mixcr-library-builder/workflow/dist/tengo/tpl/main.plj.gz
   info: 
   info: Template Pack build done.

package/CHANGELOG.md

@@ -1,5 +1,17 @@
 # @platforma-open/milaboratories.mixcr-library-builder.workflow
 
+## 1.2.0
+
+### Minor Changes
+
+- 44a1d87: remove logo file
+
+## 1.1.0
+
+### Minor Changes
+
+- 84adbca: Corrections and improvements
+
 ## 1.0.2
 
 ### Patch Changes

package/dist/tengo/lib/formatText.lib.tengo

@@ -0,0 +1,27 @@
+ll := import("@platforma-sdk/workflow-tengo:ll")
+
+text := import("text")
+
+toCamelCase := func(input) {
+    cleaned := text.re_replace(`[^a-zA-Z0-9]+`, input, " ")
+    words := text.split(cleaned, " ")
+
+    camelCase := ""
+    for i := 0; i < len(words); i++ {
+        word := words[i]
+        if word == "" {
+            continue
+        }
+        if i == 0 {
+            camelCase += text.to_lower(word)
+        } else {
+            camelCase += text.to_upper(text.substr(word, 0, 1)) + text.to_lower(text.substr(word, 1))
+        }
+    }
+
+    return camelCase
+}
+
+export ll.toStrict({
+	toCamelCase: toCamelCase
+})

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.mixcr-library-builder.workflow",
-  "version": "1.0.2",
+  "version": "1.2.0",
   "type": "module",
   "description": "Block Workflow",
   "dependencies": {},

package/src/formatText.lib.tengo

@@ -0,0 +1,27 @@
+ll := import("@platforma-sdk/workflow-tengo:ll")
+
+text := import("text")
+
+toCamelCase := func(input) {
+    cleaned := text.re_replace(`[^a-zA-Z0-9]+`, input, " ")
+    words := text.split(cleaned, " ")
+
+    camelCase := ""
+    for i := 0; i < len(words); i++ {
+        word := words[i]
+        if word == "" {
+            continue
+        }
+        if i == 0 {
+            camelCase += text.to_lower(word)
+        } else {
+            camelCase += text.to_upper(text.substr(word, 0, 1)) + text.to_lower(text.substr(word, 1))
+        }
+    }
+
+    return camelCase
+}
+
+export ll.toStrict({
+	toCamelCase: toCamelCase
+})

package/src/main.tpl.tengo

@@ -7,9 +7,12 @@ file := import("@platforma-sdk/workflow-tengo:file")
 times := import("times")
 json := import("json")
 rand := import("rand")
+text := import("text")
 
 mixcrSw := assets.importSoftware("@platforma-open/milaboratories.software-mixcr:main")
 
+toCamelCase := import(":formatText")
+
 wf.body(func(args) {
 
 	if is_undefined(args.vFastaFile) && is_undefined(args.vSpecies) {
@@ -25,6 +28,7 @@ wf.body(func(args) {
 	outputs := {}
 
 	species := args.species
+	cmdSpecies := toCamelCase.toCamelCase(species) + "_custom"
 	chain := args.chain
 
 	libraryBuilderCmdBuilder := undefined
@@ -34,8 +38,7 @@ wf.body(func(args) {
 		software(mixcrSw).
 		secret("MI_LICENSE", "MI_LICENSE").
 	 	arg("buildLibrary").
-	 	arg("--debug").
-	 	arg("--species").arg(species).
+	 	arg("--species").arg(cmdSpecies).
 	 	arg("--chain").arg(chain).
 	 	arg("--taxon-id").arg(taxonId)
 	if !is_undefined(args.vFastaFile) {
@@ -91,10 +94,10 @@ wf.body(func(args) {
 			spec: {
 				kind: "File",
 				annotations: {
-					"pl7.app/species": species,
+					"pl7.app/species": cmdSpecies,
 					"pl7.app/vdj/chain": chain,
 					"pl7.app/vdj/isLibrary": "true",
-					"pl7.app/label": species + "_" + chain + "_library"
+					"pl7.app/label": text.split(species, "_custom")[0] + " " + chain + " library"
 				}
 			}		
 	 	}