@platforma-open/milaboratories.mixcr-clonotyping-2 2.23.13 → 2.24.0
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- package/block-pack/CHANGELOG.md +15 -0
- package/block-pack/main.plj.gz +0 -0
- package/block-pack/manifest.json +1 -1
- package/block-pack/model.json +1 -1
- package/block-pack/published.json +1 -1
- package/block-pack/ui.tgz +0 -0
- package/dist/AGENTS.d.ts +155 -63
- package/dist/AGENTS.d.ts.map +1 -1
- package/dist/index.d.ts +155 -63
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +159 -81
- package/dist/index.js.map +1 -1
- package/package.json +6 -6
package/block-pack/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-clonotyping
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## 2.24.0
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### Minor Changes
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- df9ac7f: Per-step resources. "Advanced Settings" gains a Per-step resources section: a memory floor per step, which beats the global memory override for that step and does not re-run finished samples, and a "List the steps of this preset" button that plans the steps before any run.
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- df9ac7f: Run MiXCR as one exec per step, the steps `mixcr analyze --dry-run-json` plans for the preset, each with CPU and memory from one per-step table. Each step has its own log, carried in the log column in place of the single log; samples analysed before the update do not run again and keep their single log. The "Advanced Settings" memory and CPU overrides replace each step's grant, as before; the planning step takes neither. Presets that split the reads by a sample tag, and presets without qc checks, are rejected, and the settings say so under the preset picker before any run. Needs a MiXCR build with `--dry-run-json` (milaboratory/mixcr#2156). The MiTool steps are sized from the file each stages (parse from the reads, refine-tags and consensus from the `.mic`) in place of the flat 192 GiB `analyze` had; the refine, qc and planning grants are placeholders until profiled. Most steps now start at 32 GiB, below the 64 GiB floor every `analyze` had: align is a flat 32 GiB, and the MiTool, refine, assemble (UMI, cell and long-read), contig, cell and qc steps grow with their input from 32 GiB. Planning gets 4 GiB; bulk assemble, and any step without its own row, start at 64 GiB. A step that runs out of memory fails the sample with no retry: the "Advanced Settings" memory override, global or per step, is the way to raise it.
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## 2.23.14
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### Patch Changes
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- 091de08: Add dog, pig and salmon to the species list
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Show every species as its common name with the scientific name in parentheses
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## 2.23.13
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### Patch Changes
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package/block-pack/main.plj.gz
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Binary file
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package/block-pack/manifest.json
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{"schema":"v2","description":{"id":{"organization":"milaboratories","name":"mixcr-clonotyping-2","version":"2.
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{"schema":"v2","description":{"id":{"organization":"milaboratories","name":"mixcr-clonotyping-2","version":"2.24.0"},"components":{"workflow":{"type":"workflow-v1","main":{"type":"relative","path":"main.plj.gz"}},"model":{"type":"relative","path":"model.json"},"ui":{"type":"relative","path":"ui.tgz"}},"meta":{"title":"MiXCR Clonotyping","description":"Extract TCR / BCR clonotypes from next-generation sequencing data","longDescription":{"type":"relative","path":"description.md"},"changelog":{"type":"relative","path":"CHANGELOG.md"},"logo":{"type":"relative","path":"block-logo.png"},"url":"https://github.com/platforma-open/mixcr-clonotyping-2","support":"mailto:support@milaboratories.com","tags":["upstream","airr","vdj","single-cell"],"organization":{"name":"MiLaboratories Inc","url":"https://milaboratories.com/","logo":{"type":"relative","path":"organization-logo.png"}},"marketplaceRanking":16900},"featureFlags":{"supportsLazyState":true,"supportsPframeQueryRanking":true,"requiresUIAPIVersion":3,"requiresModelAPIVersion":2,"requiresCreatePTable":2,"requiresPFramesVersion":1001031,"requiresPFrameSpec":true,"requiresPFrame":true,"requiresDialog":true,"requiresColumnsCollection":true},"kind":"@platforma-open/milaboratories.mixcr-clonotyping-2.kind@1.1.0"},"timestamp":1791900825842,"files":[{"name":"main.plj.gz","size":1568882,"sha256":"B47EA33812DB946DE8AF980E660E8F73679E38F7C611AEEA6EEA25548F6D8F2E"},{"name":"model.json","size":582729,"sha256":"382368AF048478A3F0D8201002BF8C1AC4511A03F19C40A637EDE4CBA549D4FC"},{"name":"ui.tgz","size":4066132,"sha256":"06DC98C1B79822C45D5AB7B95844001D8F251F5E38DC50C704DAC04F924BF3DE"},{"name":"organization-logo.png","size":24439,"sha256":"FA71390C77C91E4B7FAAE5640D00F92F1E3F2869296F68B6040DD7CC549A50B5"},{"name":"description.md","size":1148,"sha256":"B319CBECC5055A89194C4D7B5768E1ABDE225053885800179439839408ECBA54"},{"name":"CHANGELOG.md","size":57084,"sha256":"DC8AE9FBBED692D2178EE05B541B71A48B417AF585933C6DBFBA917E227C8955"},{"name":"block-logo.png","size":21527,"sha256":"6BB33BAF0CD039549661B51AE490373BE60D1811EC71F5023400928293BC2427"}]}
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