@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.7.2 → 3.8.0

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Files changed (17) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +6 -0
  3. package/dist/tengo/lib/calculate-export-specs.lib.tengo +12 -2
  4. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  5. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  6. package/dist/tengo/tpl/export-report.plj.gz +0 -0
  7. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  8. package/dist/tengo/tpl/main.plj.gz +0 -0
  9. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  10. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  11. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  12. package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
  13. package/dist/tengo/tpl/process.plj.gz +0 -0
  14. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  15. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  16. package/package.json +1 -1
  17. package/src/calculate-export-specs.lib.tengo +12 -2
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.7.2 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.8.0 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  info: Skipping unknown file type: test/columns.test.ts
package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
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+ ## 3.8.0
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+
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+ ### Minor Changes
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+
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+ - 48c8ea4: core features fixes
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+
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  ## 3.7.2
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  ### Patch Changes
package/dist/tengo/lib/calculate-export-specs.lib.tengo CHANGED
@@ -64,13 +64,23 @@ assemblingFeatureInfo := func(assemblingFeature) {
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  productiveFeature = splittedFeature1[0] + "_TO_FR4(0,-1)"
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  coreVFeature = "{"+splittedFeature1[0]+"Begin:FR3End}"
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  coreJFeature = "FR4"
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+ } else if splittedFeature1[0] == "CDR3" {
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+ productiveFeature = assemblingFeature
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  } else {
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  productiveFeature = assemblingFeature
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  coreVFeature = "{"+splittedFeature1[0]+"Begin:FR3End}"
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  }
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  } else if len(splittedFeature2) == 2 {
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- productiveFeature = assemblingFeature
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- coreVFeature = splittedFeature2[0]+":FR3End}"
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+ if splittedFeature2[0] == "{CDR3Begin" {
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+ productiveFeature = assemblingFeature
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+ } else {
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+ productiveFeature = assemblingFeature
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+ coreVFeature = "{"+splittedFeature2[0]+":FR3End}"
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+ }
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+ if splittedFeature2[1] == "FR4End}" {
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+ coreJFeature = "FR4"
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+ productiveFeature = splittedFeature2[0] + ":" + text.split(splittedFeature2[1], "}")[0] + "(-1)}"
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+ }
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  }
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  } else {
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  productiveFeature = "CDR3"
package/dist/tengo/tpl/export-report.plj.gz CHANGED
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package/dist/tengo/tpl/list-presets.plj.gz CHANGED
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package/dist/tengo/tpl/main.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
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package/dist/tengo/tpl/prerun.plj.gz CHANGED
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package/dist/tengo/tpl/process.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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- "version": "3.7.2",
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+ "version": "3.8.0",
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  "description": "Tengo-based template",
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  "dependencies": {
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  "@platforma-sdk/workflow-tengo": "^5.3.2",
package/src/calculate-export-specs.lib.tengo CHANGED
@@ -64,13 +64,23 @@ assemblingFeatureInfo := func(assemblingFeature) {
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  productiveFeature = splittedFeature1[0] + "_TO_FR4(0,-1)"
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  coreVFeature = "{"+splittedFeature1[0]+"Begin:FR3End}"
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  coreJFeature = "FR4"
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+ } else if splittedFeature1[0] == "CDR3" {
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+ productiveFeature = assemblingFeature
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  } else {
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  productiveFeature = assemblingFeature
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  coreVFeature = "{"+splittedFeature1[0]+"Begin:FR3End}"
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  }
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  } else if len(splittedFeature2) == 2 {
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- productiveFeature = assemblingFeature
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- coreVFeature = splittedFeature2[0]+":FR3End}"
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+ if splittedFeature2[0] == "{CDR3Begin" {
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+ productiveFeature = assemblingFeature
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+ } else {
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+ productiveFeature = assemblingFeature
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+ coreVFeature = "{"+splittedFeature2[0]+":FR3End}"
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+ }
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+ if splittedFeature2[1] == "FR4End}" {
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+ coreJFeature = "FR4"
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+ productiveFeature = splittedFeature2[0] + ":" + text.split(splittedFeature2[1], "}")[0] + "(-1)}"
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+ }
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  }
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  } else {
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  productiveFeature = "CDR3"