@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.6.1 → 3.7.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +12 -0
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/export-report.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +4 -4
- package/src/main.tpl.tengo +2 -1
- package/src/process.tpl.tengo +6 -1
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.7.1 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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info: Skipping unknown file type: test/columns.test.ts
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package/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-clonotyping.workflow
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## 3.7.1
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### Patch Changes
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- c337aa2: Fix [sdk/ui] Broken error propagation: block errors are not showing anymore
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## 3.7.0
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### Minor Changes
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- dde56a2: Raw results export
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## 3.6.1
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### Patch Changes
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package/package.json
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{
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"name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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"version": "3.
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"version": "3.7.1",
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"description": "Tengo-based template",
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "^5.2
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"@platforma-sdk/workflow-tengo": "^5.3.2",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-233-develop"
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},
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"devDependencies": {
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"@milaboratories/ts-configs": "^1.0.6",
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"@platforma-sdk/tengo-builder": "^2.
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"@platforma-sdk/test": "^1.
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"@platforma-sdk/tengo-builder": "^2.2.3",
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"@platforma-sdk/test": "^1.43.27",
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"vitest": "~2.1.9",
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"typescript": "~5.6.3"
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},
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package/src/main.tpl.tengo
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@@ -166,6 +166,7 @@ wf.body(func(args) {
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logs: runMixcr.output("logs.data"),
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clns: runMixcr.output("clns.data"),
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clonotypes: pframes.exportFrame(runMixcr.output("clonotypes")),
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clonotypeTables: pframes.exportFrame(runMixcr.output("clonotypeTables")),
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fileImports: smart.createMapResource(maps.mapValues(fileImports, func(im) {
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return im.handle
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})),
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if !is_undefined(libraryImportHandle) {
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outputs.libraryImportHandle = libraryImportHandle
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}
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qcReportTable := runMixcr.output("qcReportTable")
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outputs.qcReportTable = pframes.exportFrame(qcReportTable)
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package/src/process.tpl.tengo
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return schema
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}
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clonotypeTables := pframes.pFrameBuilder()
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resultsToCache := {}
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for chain in chains {
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kind: "PColumn",
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name: "mixcr.com/clonotypeTable",
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domain: {
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"pl7.app/vdj/clonotypingRunId": blockId
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"pl7.app/vdj/clonotypingRunId": blockId,
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"pl7.app/vdj/chain": chain
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},
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valueType: "File"
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},
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}
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resultsToCache["clonotypeTable/" + chain] = exportResults.outputData("clonotypeTable")
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clonotypeTables.add(chain, exportResults.outputSpec("clonotypeTable"), exportResults.outputData("clonotypeTable"))
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aggregateByCloneKey := pframes.processColumn(
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exportResults.output("clonotypeTable"),
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"resultsToCache": resultsToCache,
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clonotypeTables: clonotypeTables.build(),
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clonotypes: clonotypes.build(),
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qcReportTable: qcReportTable.output("qcReportTable")
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}
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