@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.5.2 → 3.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +12 -0
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/export-report.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +2 -1
- package/src/export-report.tpl.tengo +9 -0
- package/src/process.tpl.tengo +3 -1
- package/tsconfig.json +1 -7
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.6.1 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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info: Skipping unknown file type: test/columns.test.ts
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package/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-clonotyping.workflow
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## 3.6.1
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### Patch Changes
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- 0f20633: migrate to ts-builder
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## 3.6.0
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### Minor Changes
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- 9965185: add library files to qc report command
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## 3.5.2
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### Patch Changes
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package/package.json
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{
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"name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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"version": "3.
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"version": "3.6.1",
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"description": "Tengo-based template",
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "^5.2.0",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-233-develop"
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},
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"devDependencies": {
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"@milaboratories/ts-configs": "^1.0.6",
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"@platforma-sdk/tengo-builder": "^2.1.18",
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"@platforma-sdk/test": "^1.42.47",
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"vitest": "~2.1.9",
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presetSpecForBack := inputs.presetSpecForBack
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sampleIdAxisSpec := inputs.sampleIdAxisSpec
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chains := inputs.chains
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library := inputs.library
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isLibraryFileGzipped := inputs.isLibraryFileGzipped
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isSingleCell := len(presetSpecForBack.cellTags) > 0
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hasUmi := !is_undefined(presetSpecForBack.umiTags) && len(presetSpecForBack.umiTags) > 0
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}
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exportReportCmd.arg("qc-report.tsv").saveFile("qc-report.tsv")
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if library {
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if isLibraryFileGzipped {
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exportReportCmd.addFile("library.json.gz", library)
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} else {
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exportReportCmd.addFile("library.json", library)
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}
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}
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// Run the command
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result := exportReportCmd.run()
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package/src/process.tpl.tengo
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clnsData: mixcrResults.outputData("clns"),
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presetSpecForBack: presetSpecForBack,
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sampleIdAxisSpec: sampleIdAxisSpec,
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chains: chains
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chains: chains,
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library: library,
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isLibraryFileGzipped: isLibraryFileGzipped
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})
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return {
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package/tsconfig.json
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{
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"extends": "@milaboratories/ts-configs/tsconfig.node.json",
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"compilerOptions": {
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"target": "es2022",
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"module": "commonjs",
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"moduleResolution": "node",
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"esModuleInterop": true,
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"strict": true,
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"outDir": "./dist",
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"rootDir": "./src",
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"sourceMap": true,
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"declaration": true
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},
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"include": ["src/**/*"],
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"exclude": ["node_modules", "dist"]
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