@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.24.5 → 3.24.6

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Files changed (16) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +6 -0
  3. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  4. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  5. package/dist/tengo/tpl/export-report.plj.gz +0 -0
  6. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  7. package/dist/tengo/tpl/main.plj.gz +0 -0
  8. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  9. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  10. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  11. package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
  12. package/dist/tengo/tpl/process.plj.gz +0 -0
  13. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  14. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  15. package/package.json +1 -1
  16. package/src/process-single-cell.tpl.tengo +7 -0
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.24.5 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.24.6 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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  > shx rm -rf dist && pl-tengo check && pl-tengo build
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  info: Skipping unknown file type: test/columns.test.ts
package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
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+ ## 3.24.6
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+
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+ ### Patch Changes
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+
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+ - eea91d6: Filter non productive sequences for single cell data
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+
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  ## 3.24.5
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  ### Patch Changes
package/dist/tengo/tpl/export-report.plj.gz CHANGED
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package/dist/tengo/tpl/list-presets.plj.gz CHANGED
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package/dist/tengo/tpl/main.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
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package/dist/tengo/tpl/prerun.plj.gz CHANGED
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package/dist/tengo/tpl/process.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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- "version": "3.24.5",
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+ "version": "3.24.6",
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  "description": "Tengo-based template",
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  "dependencies": {
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  "@platforma-sdk/workflow-tengo": "5.11.0",
package/src/process-single-cell.tpl.tengo CHANGED
@@ -123,6 +123,13 @@ self.body(func(inputs) {
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  alias("chainRank")
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  ).withoutColumns("rawChainRank")
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+ // Filter out non-productive chains so that cells with a non-productive
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+ // primary chain will have no entry and get excluded by the downstream
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+ // clonotypeKeyA1/B1 isNotNull filter.
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+ dfWithChainRank = dfWithChainRank.filter(
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+ pt.col(mainIsProductiveColumn).eq("true")
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+ )
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+
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  dfWithChainRank.save("output.tsv")
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  // Run the workflow