@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.24.4 → 3.24.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +12 -0
- package/dist/tengo/lib/calculate-export-specs.lib.tengo +1 -1
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/export-report.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +3 -3
- package/src/calculate-export-specs.lib.tengo +1 -1
- package/src/process-single-cell.tpl.tengo +7 -0
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.24.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.24.6 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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> shx rm -rf dist && pl-tengo check && pl-tengo build
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info: Skipping unknown file type: test/columns.test.ts
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package/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-clonotyping.workflow
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## 3.24.6
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### Patch Changes
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- eea91d6: Filter non productive sequences for single cell data
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## 3.24.5
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### Patch Changes
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- b078936: update clone label to id
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## 3.24.4
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### Patch Changes
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@@ -411,7 +411,7 @@ calculateExportSpecs := func(presetSpecForBack, sampleIdAxisSpec, blockId, expor
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name: "pl7.app/label",
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valueType: "String",
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annotations: a(100000, false, {
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"pl7.app/label": "Clone
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"pl7.app/label": "Clone Id"
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})
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}
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}
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package/package.json
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{
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"name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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"version": "3.24.
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"version": "3.24.6",
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"description": "Tengo-based template",
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "5.
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"@platforma-sdk/workflow-tengo": "5.11.0",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-317-develop"
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},
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"devDependencies": {
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"@platforma-sdk/tengo-builder": "2.
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"@platforma-sdk/tengo-builder": "2.5.2"
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},
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"scripts": {
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"build": "shx rm -rf dist && pl-tengo check && pl-tengo build",
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@@ -411,7 +411,7 @@ calculateExportSpecs := func(presetSpecForBack, sampleIdAxisSpec, blockId, expor
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name: "pl7.app/label",
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valueType: "String",
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annotations: a(100000, false, {
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"pl7.app/label": "Clone
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"pl7.app/label": "Clone Id"
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})
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}
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}
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@@ -123,6 +123,13 @@ self.body(func(inputs) {
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alias("chainRank")
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).withoutColumns("rawChainRank")
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// Filter out non-productive chains so that cells with a non-productive
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// primary chain will have no entry and get excluded by the downstream
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// clonotypeKeyA1/B1 isNotNull filter.
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dfWithChainRank = dfWithChainRank.filter(
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pt.col(mainIsProductiveColumn).eq("true")
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)
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dfWithChainRank.save("output.tsv")
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// Run the workflow
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