@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.23.4 → 3.23.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +6 -0
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/export-report.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +1 -1
- package/src/mixcr-export.tpl.tengo +5 -5
package/.turbo/turbo-build.log
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
WARN Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
|
|
2
2
|
|
|
3
|
-
> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.23.
|
|
3
|
+
> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.23.5 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
|
|
4
4
|
> shx rm -rf dist && pl-tengo check && pl-tengo build
|
|
5
5
|
|
|
6
6
|
info: Skipping unknown file type: test/columns.test.ts
|
package/CHANGELOG.md
CHANGED
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
package/package.json
CHANGED
|
@@ -7,6 +7,7 @@ smart := import("@platforma-sdk/workflow-tengo:smart")
|
|
|
7
7
|
slices := import("@platforma-sdk/workflow-tengo:slices")
|
|
8
8
|
assets := import("@platforma-sdk/workflow-tengo:assets")
|
|
9
9
|
exec := import("@platforma-sdk/workflow-tengo:exec")
|
|
10
|
+
units := import("@platforma-sdk/workflow-tengo:units")
|
|
10
11
|
pt := import("@platforma-sdk/workflow-tengo:pt")
|
|
11
12
|
clonotypeLabel := import(":clonotype-label")
|
|
12
13
|
stopCodonReplacement := import(":stop-codon-replacement")
|
|
@@ -31,7 +32,7 @@ self.body(func(inputs) {
|
|
|
31
32
|
aminoAcidSeqColumns := params.aminoAcidSeqColumns
|
|
32
33
|
aminoAcidSeqColumnPairs := params.aminoAcidSeqColumnPairs
|
|
33
34
|
cdr3SeqColumns := params.cdr3SeqColumns
|
|
34
|
-
|
|
35
|
+
|
|
35
36
|
clonotypeKeyColumns := params.clonotypeKeyColumns
|
|
36
37
|
clonotypeKeyArgs := params.clonotypeKeyArgs
|
|
37
38
|
|
|
@@ -49,7 +50,7 @@ self.body(func(inputs) {
|
|
|
49
50
|
|
|
50
51
|
useProductiveFilter := is_undefined(stopCodonTypes) || len(stopCodonTypes) == 0
|
|
51
52
|
|
|
52
|
-
exportMemGB := undefined
|
|
53
|
+
exportMemGB := undefined
|
|
53
54
|
if !is_undefined(inputs.perProcessMemGB) {
|
|
54
55
|
exportMemGB = int(1.0*inputs.perProcessMemGB/4.0)
|
|
55
56
|
if exportMemGB < 12 {
|
|
@@ -59,8 +60,7 @@ self.body(func(inputs) {
|
|
|
59
60
|
exportMemGB = 12
|
|
60
61
|
}
|
|
61
62
|
ptMemGB := int(2.0*exportMemGB/3.0)
|
|
62
|
-
|
|
63
|
-
|
|
63
|
+
|
|
64
64
|
hashKeyDerivationExpressionPt := func(sourceColumns) {
|
|
65
65
|
return pt.concatStr(
|
|
66
66
|
slices.map(sourceColumns, func(colName) { return pt.col(colName).fillNull("") }),
|
|
@@ -130,7 +130,7 @@ self.body(func(inputs) {
|
|
|
130
130
|
// PTabler processing for main TSV output
|
|
131
131
|
wfMain := pt.workflow().
|
|
132
132
|
inMediumQueue().
|
|
133
|
-
mem(ptMemGB).
|
|
133
|
+
mem(ptMemGB * units.GiB).
|
|
134
134
|
cpu(2)
|
|
135
135
|
|
|
136
136
|
frameInputMap := {
|