@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.20.0 → 3.21.0

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Files changed (16) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +6 -0
  3. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  4. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  5. package/dist/tengo/tpl/export-report.plj.gz +0 -0
  6. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  7. package/dist/tengo/tpl/main.plj.gz +0 -0
  8. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  9. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  10. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  11. package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
  12. package/dist/tengo/tpl/process.plj.gz +0 -0
  13. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  14. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  15. package/package.json +1 -1
  16. package/src/export-report.tpl.tengo +10 -4
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.20.0 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.21.0 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  info: Skipping unknown file type: test/columns.test.ts
package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
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+ ## 3.21.0
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+
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+ ### Minor Changes
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+
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+ - 075b011: custom library bug fix
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+
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  ## 3.20.0
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  ### Minor Changes
package/dist/tengo/tpl/export-report.plj.gz CHANGED
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package/dist/tengo/tpl/list-presets.plj.gz CHANGED
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package/dist/tengo/tpl/main.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
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package/dist/tengo/tpl/prerun.plj.gz CHANGED
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package/dist/tengo/tpl/process.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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- "version": "3.20.0",
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+ "version": "3.21.0",
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  "description": "Tengo-based template",
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  "dependencies": {
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  "@platforma-sdk/workflow-tengo": "5.8.0",
package/src/export-report.tpl.tengo CHANGED
@@ -149,15 +149,21 @@ self.body(func(inputs) {
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  if mixcrChainsArg != "" {
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  exportFiltersCmd.arg("--chains").arg(mixcrChainsArg)
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  }
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- exportFiltersResult := exportFiltersCmd.
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+ exportFiltersCmd = exportFiltersCmd.
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  arg("-isOOF").arg(featureForFlags).
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  arg("-hasStops").arg(featureForFlags).
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  arg("clones.clns").
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  addFile("clones.clns", clnsFile).
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  arg("clones.tsv").
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- saveFile("clones.tsv").
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- cacheHours(3).
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- run()
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+ saveFile("clones.tsv")
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+ if library {
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+ if isLibraryFileGzipped {
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+ exportFiltersCmd.addFile("library.json.gz", library)
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+ } else {
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+ exportFiltersCmd.addFile("library.json", library)
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+ }
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+ }
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+ exportFiltersResult := exportFiltersCmd.cacheHours(3).run()
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  filterTsv := exportFiltersResult.getFile("clones.tsv")
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  dfFilters := wf.frame(filterTsv, { xsvType: "tsv", inferSchema: false, schema: [ { column: isOOFColumn, type: "String" }, { column: hasStopsColumn, type: "String" } ] })
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  dfFilters = dfFilters.withColumns(