@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.19.0 → 3.21.0

package/.turbo/turbo-build.log

@@ -1,6 +1,6 @@
  WARN  Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.19.0 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
+> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.21.0 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
 > rm -rf dist && pl-tengo check && pl-tengo build
 
   info: Skipping unknown file type: test/columns.test.ts

package/CHANGELOG.md

@@ -1,5 +1,17 @@
 # @platforma-open/milaboratories.mixcr-clonotyping.workflow
 
+## 3.21.0
+
+### Minor Changes
+
+- 075b011: custom library bug fix
+
+## 3.20.0
+
+### Minor Changes
+
+- 984f9d8: Support custom block title and running status
+
 ## 3.19.0
 
 ### Minor Changes

package/package.json

@@ -1,22 +1,17 @@
 {
   "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
-  "version": "3.19.0",
+  "version": "3.21.0",
   "description": "Tengo-based template",
   "dependencies": {
-    "@platforma-sdk/workflow-tengo": "^5.6.6",
+    "@platforma-sdk/workflow-tengo": "5.8.0",
     "@platforma-open/milaboratories.software-mixcr": "4.7.0-254-develop"
   },
   "devDependencies": {
-    "@milaboratories/ts-configs": "^1.1.0",
-    "@platforma-sdk/tengo-builder": "^2.4.1",
-    "@platforma-sdk/test": "^1.47.6",
-    "vitest": "~4.0.15",
-    "typescript": "~5.6.3"
+    "@platforma-sdk/tengo-builder": "2.4.8"
   },
   "scripts": {
     "build": "rm -rf dist && pl-tengo check && pl-tengo build",
     "format": "/usr/bin/env emacs --script ./format.el",
-    "test": "vitest",
     "do-pack": "rm -f *.tgz && pnpm pack && mv *.tgz package.tgz"
   }
 }

package/src/export-report.tpl.tengo

@@ -149,15 +149,21 @@ self.body(func(inputs) {
         if mixcrChainsArg != "" {
             exportFiltersCmd.arg("--chains").arg(mixcrChainsArg)
         }
-        exportFiltersResult := exportFiltersCmd.
+        exportFiltersCmd = exportFiltersCmd.
             arg("-isOOF").arg(featureForFlags).
             arg("-hasStops").arg(featureForFlags).
             arg("clones.clns").
             addFile("clones.clns", clnsFile).
             arg("clones.tsv").
-            saveFile("clones.tsv").
-            cacheHours(3).
-            run()
+            saveFile("clones.tsv")
+        if library {
+            if isLibraryFileGzipped {
+			    exportFiltersCmd.addFile("library.json.gz", library)
+		    } else {
+			    exportFiltersCmd.addFile("library.json", library)
+		    }
+		}
+        exportFiltersResult := exportFiltersCmd.cacheHours(3).run()
         filterTsv := exportFiltersResult.getFile("clones.tsv")
         dfFilters := wf.frame(filterTsv, { xsvType: "tsv", inferSchema: false, schema: [ { column: isOOFColumn, type: "String" }, { column: hasStopsColumn, type: "String" } ] })
         dfFilters = dfFilters.withColumns(

package/tsconfig.json

@@ -1,9 +0,0 @@
-{
-  "extends": "@milaboratories/ts-configs/tsconfig.node.json",
-  "compilerOptions": {
-    "outDir": "./dist",
-    "rootDir": "./src",
-  },
-  "include": ["src/**/*"],
-  "exclude": ["node_modules", "dist"]
-}

package/vitest.config.mts

@@ -1,10 +0,0 @@
-import { defineConfig } from 'vitest/config';
-
-export default defineConfig({
-  test: {
-    watch: false,
-    maxConcurrency: 3,
-    testTimeout: 10000,
-    retry: 2
-  }
-});