@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.13.0 → 3.14.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +6 -0
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/export-report.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +1 -1
- package/src/main.tpl.tengo +1 -0
- package/src/mixcr-analyze.tpl.tengo +10 -0
- package/src/process.tpl.tengo +2 -1
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.14.0 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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info: Skipping unknown file type: test/columns.test.ts
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package/CHANGELOG.md
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package/package.json
CHANGED
package/src/main.tpl.tengo
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@@ -117,6 +117,7 @@ wf.body(func(args) {
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limitInput: limitInput,
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perProcessMemGB: perProcessMemGB,
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perProcessCPUs: perProcessCPUs,
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highDiversityLibrary: args.highDiversityLibrary,
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blockId: blockId,
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libraryId: libraryId,
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presetCommonName: args.presetCommonName,
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@@ -121,6 +121,16 @@ self.body(func(inputs) {
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arg(preset.name)
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}
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// High diversity library tuning
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highDiversityLibrary := params.highDiversityLibrary
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if !is_undefined(highDiversityLibrary) && highDiversityLibrary {
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mixcrCmdBuilder.
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arg("-Massemble.cloneAssemblerParameters.minimalQuality=20").
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arg("-Massemble.cloneAssemblerParameters.badQualityThreshold=10").
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arg("-Massemble.cloneAssemblerParameters.cloneClusteringParameters.searchParameters=oneMismatchOrIndel").
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arg("-Massemble.cloneAssemblerParameters.cloneClusteringParameters.searchDepth=1")
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}
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+
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inputMap := inputData.inputs()
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if inputDataMeta.keyLength == 0 {
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ll.assert(aggregationAxesNames == [], "unexpected aggregation axes names")
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package/src/process.tpl.tengo
CHANGED
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@@ -267,7 +267,8 @@ self.body(func(inputs) {
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limitInput: limitInput,
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fileExtension: fileExtension,
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reports: reports,
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isLibraryFileGzipped: isLibraryFileGzipped
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isLibraryFileGzipped: isLibraryFileGzipped,
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highDiversityLibrary: params.highDiversityLibrary
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},
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library: library,
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presetContent: presetContent
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