@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.11.0 → 3.12.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +12 -0
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/export-report.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +4 -4
- package/src/mixcr-export.tpl.tengo +4 -0
package/.turbo/turbo-build.log
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.12.1 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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info: Skipping unknown file type: test/columns.test.ts
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package/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-clonotyping.workflow
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## 3.12.1
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### Patch Changes
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- a5e2509: sdk update
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## 3.12.0
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### Minor Changes
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- fa19090: clonotypeLabel in export raw data
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## 3.11.0
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### Minor Changes
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package/package.json
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{
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"name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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"version": "3.
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"version": "3.12.1",
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"description": "Tengo-based template",
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "^5.
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"@platforma-sdk/workflow-tengo": "^5.5.9",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-233-develop"
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},
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"devDependencies": {
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"@milaboratories/ts-configs": "^1.0.6",
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"@platforma-sdk/tengo-builder": "^2.3.
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"@platforma-sdk/test": "^1.
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"@platforma-sdk/tengo-builder": "^2.3.3",
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"@platforma-sdk/test": "^1.45.9",
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"vitest": "~2.1.9",
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"typescript": "~5.6.3"
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},
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@@ -8,6 +8,7 @@ slices := import("@platforma-sdk/workflow-tengo:slices")
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assets := import("@platforma-sdk/workflow-tengo:assets")
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exec := import("@platforma-sdk/workflow-tengo:exec")
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pt := import("@platforma-sdk/workflow-tengo:pt")
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clonotypeLabel := import(":clonotype-label")
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json := import("json")
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@@ -133,6 +134,9 @@ self.body(func(inputs) {
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hashKeyDerivationExpressionPt(clonotypeKeyColumns).alias("clonotypeKey")
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)
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// Generate clonotypeLabel (C-XXXXX or C-XXXXX-RANK) from clonotypeKey for bulk data
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dfMain = clonotypeLabel.addClonotypeLabelColumnsPt(dfMain, "clonotypeKey", "clonotypeLabel", pt)
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dfMain.save("output.tsv")
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ptablerResultMain := wfMain.run()
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processedTsv := ptablerResultMain.getFile("output.tsv")
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