@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.10.0 → 3.10.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +6 -0
- package/dist/tengo/lib/calculate-export-specs.lib.tengo +1 -1
- package/dist/tengo/lib/qc-report-columns.lib.tengo +1 -1
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/export-report.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +4 -4
- package/src/calculate-export-specs.lib.tengo +1 -1
- package/src/process.tpl.tengo +5 -5
- package/src/qc-report-columns.lib.tengo +1 -1
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.10.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.10.1 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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info: Skipping unknown file type: test/columns.test.ts
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package/CHANGELOG.md
CHANGED
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@@ -1353,7 +1353,7 @@ getQcReportColumns := func(hasUmi, isSingleCell, sampleIdAxisSpec, chains, cellT
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reportColumnsSpec: {
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axes: axes,
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columns: columns,
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storageFormat: "
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storageFormat: "Parquet",
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partitionKeyLength: 0
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}
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}
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package/package.json
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@@ -1,15 +1,15 @@
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{
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"name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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"version": "3.10.
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"version": "3.10.1",
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"description": "Tengo-based template",
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "^5.
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"@platforma-sdk/workflow-tengo": "^5.4.2",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-233-develop"
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},
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"devDependencies": {
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"@milaboratories/ts-configs": "^1.0.6",
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"@platforma-sdk/tengo-builder": "^2.3.
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"@platforma-sdk/test": "^1.44.
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"@platforma-sdk/tengo-builder": "^2.3.2",
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"@platforma-sdk/test": "^1.44.19",
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"vitest": "~2.1.9",
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"typescript": "~5.6.3"
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},
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package/src/process.tpl.tengo
CHANGED
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@@ -355,7 +355,7 @@ self.body(func(inputs) {
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settings: {
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axes: [ axisByClonotypeKeyGen(chain) ],
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columns: columnsSpecPerSample,
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storageFormat: "
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storageFormat: "Parquet",
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partitionKeyLength: 0
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},
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mem: "16GiB",
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@@ -448,7 +448,7 @@ self.body(func(inputs) {
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settings: {
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axes: [ axisByClonotypeKeyGen(chain) ],
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columns: columnsSpecPerClonotypeNoAggregates + columnsSpecPerClonotypeAggregates,
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storageFormat: "
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storageFormat: "Parquet",
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partitionKeyLength: 0
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},
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mem: "24GiB",
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@@ -533,7 +533,7 @@ self.body(func(inputs) {
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spec: sampleIdAxisSpec
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}, axisByScClonotypeKeyGen(receptor) ],
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columns: columnsSpecPerSampleSc,
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storageFormat: "
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storageFormat: "Parquet",
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partitionKeyLength: 1
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},
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mem: "16GiB",
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settings: {
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axes: [ axisByScClonotypeKeyGen(receptor) ],
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columns: columnsSpecPerClonotypeSc,
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storageFormat: "
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storageFormat: "Parquet"
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},
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mem: "12GiB",
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cpu: 2,
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@@ -615,7 +615,7 @@ self.body(func(inputs) {
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annotations: annotationsTransformation
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}
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}),
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storageFormat: "
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storageFormat: "Parquet",
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partitionKeyLength: 0
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},
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mem: "24GiB",
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@@ -1353,7 +1353,7 @@ getQcReportColumns := func(hasUmi, isSingleCell, sampleIdAxisSpec, chains, cellT
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reportColumnsSpec: {
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axes: axes,
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columns: columns,
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storageFormat: "
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storageFormat: "Parquet",
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partitionKeyLength: 0
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}
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}
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