@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 3.0.1 → 3.0.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (16) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +12 -0
  3. package/dist/tengo/lib/calculate-export-specs.lib.tengo +3 -3
  4. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  5. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  6. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  7. package/dist/tengo/tpl/main.plj.gz +0 -0
  8. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  9. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  10. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  11. package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
  12. package/dist/tengo/tpl/process.plj.gz +0 -0
  13. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  14. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  15. package/package.json +4 -4
  16. package/src/calculate-export-specs.lib.tengo +3 -3
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
1
1
   WARN  Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
2
2
 
3
- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.0.1 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
3
+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@3.0.3 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
4
4
  > rm -rf dist && pl-tengo check && pl-tengo build
5
5
 
6
6
  info: Skipping unknown file type: test/columns.test.ts
package/CHANGELOG.md CHANGED
@@ -1,5 +1,17 @@
1
1
  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
2
2
 
3
+ ## 3.0.3
4
+
5
+ ### Patch Changes
6
+
7
+ - 37f37ee: Updated SDK
8
+
9
+ ## 3.0.2
10
+
11
+ ### Patch Changes
12
+
13
+ - 59ead64: Fix for multi-barcode single cell presets
14
+
3
15
  ## 3.0.1
4
16
 
5
17
  ### Patch Changes
package/dist/tengo/lib/calculate-export-specs.lib.tengo CHANGED
@@ -125,7 +125,7 @@ calculateExportSpecs := func(presetSpecForBack, sampleIdAxisSpec, blockId) {
125
125
  splitByC := ops.splitByC
126
126
 
127
127
  isSingleCell := !is_undefined(cellTags) && len(cellTags) > 0
128
- hashCellKey := isSingleCell && len(cellTags) == 1
128
+ hashCellKey := isSingleCell && len(cellTags) > 1
129
129
 
130
130
  assemblingFeatureInfo := assemblingFeatureInfo(assemblingFeature)
131
131
  productiveFeature := assemblingFeatureInfo.productiveFeature
@@ -546,7 +546,7 @@ calculateExportSpecs := func(presetSpecForBack, sampleIdAxisSpec, blockId) {
546
546
  for junctionType in junctionTypes {
547
547
  feature := junctionType + "Junction"
548
548
  naRegex := junctionType == "VJ" ? "region_not_covered" : "no_d_gene"
549
-
549
+
550
550
  columnsSpecPerClonotypeNoAggregates += [ {
551
551
  column: "nLength" + feature,
552
552
  id: "n-length-" + text.to_lower(junctionType) + "-junction",
@@ -567,7 +567,7 @@ calculateExportSpecs := func(presetSpecForBack, sampleIdAxisSpec, blockId) {
567
567
  exportArgs += [ [ "-nLength", feature ] ]
568
568
  orderP -= 100
569
569
  }
570
-
570
+
571
571
 
572
572
  columnsSpecPerClonotypeNoAggregates += [ {
573
573
  column: "nLengthTotalAdded",
package/dist/tengo/tpl/list-presets.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/main.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/prerun.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/process.plj.gz CHANGED
Binary file
package/package.json CHANGED
@@ -1,14 +1,14 @@
1
1
  {
2
2
  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
3
- "version": "3.0.1",
3
+ "version": "3.0.3",
4
4
  "description": "Tengo-based template",
5
5
  "dependencies": {
6
- "@platforma-sdk/workflow-tengo": "^4.14.1",
6
+ "@platforma-sdk/workflow-tengo": "^5.0.2",
7
7
  "@platforma-open/milaboratories.software-mixcr": "4.7.0-223-develop"
8
8
  },
9
9
  "devDependencies": {
10
- "@platforma-sdk/tengo-builder": "^2.1.13",
11
- "@platforma-sdk/test": "^1.42.4",
10
+ "@platforma-sdk/tengo-builder": "^2.1.15",
11
+ "@platforma-sdk/test": "^1.42.20",
12
12
  "vitest": "~2.1.9",
13
13
  "typescript": "~5.5.4"
14
14
  },
package/src/calculate-export-specs.lib.tengo CHANGED
@@ -125,7 +125,7 @@ calculateExportSpecs := func(presetSpecForBack, sampleIdAxisSpec, blockId) {
125
125
  splitByC := ops.splitByC
126
126
 
127
127
  isSingleCell := !is_undefined(cellTags) && len(cellTags) > 0
128
- hashCellKey := isSingleCell && len(cellTags) == 1
128
+ hashCellKey := isSingleCell && len(cellTags) > 1
129
129
 
130
130
  assemblingFeatureInfo := assemblingFeatureInfo(assemblingFeature)
131
131
  productiveFeature := assemblingFeatureInfo.productiveFeature
@@ -546,7 +546,7 @@ calculateExportSpecs := func(presetSpecForBack, sampleIdAxisSpec, blockId) {
546
546
  for junctionType in junctionTypes {
547
547
  feature := junctionType + "Junction"
548
548
  naRegex := junctionType == "VJ" ? "region_not_covered" : "no_d_gene"
549
-
549
+
550
550
  columnsSpecPerClonotypeNoAggregates += [ {
551
551
  column: "nLength" + feature,
552
552
  id: "n-length-" + text.to_lower(junctionType) + "-junction",
@@ -567,7 +567,7 @@ calculateExportSpecs := func(presetSpecForBack, sampleIdAxisSpec, blockId) {
567
567
  exportArgs += [ [ "-nLength", feature ] ]
568
568
  orderP -= 100
569
569
  }
570
-
570
+
571
571
  // Spec for total added length (calculated by pt in aggregate-by-clonotype-key, no flag)
572
572
  columnsSpecPerClonotypeNoAggregates += [ {
573
573
  column: "nLengthTotalAdded",