@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 2.6.0 → 2.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/.turbo/turbo-test.log +10 -10
- package/CHANGELOG.md +6 -0
- package/dist/tengo/lib/calculate-export-specs.lib.tengo +3 -0
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +4 -4
- package/src/calculate-export-specs.lib.tengo +3 -0
package/.turbo/turbo-build.log
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
WARN Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
|
|
2
2
|
|
|
3
|
-
> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.6.
|
|
3
|
+
> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.6.1 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
|
|
4
4
|
> rm -rf dist && pl-tengo check && pl-tengo build
|
|
5
5
|
|
|
6
6
|
info: Skipping unknown file type: test/columns.test.ts
|
package/.turbo/turbo-test.log
CHANGED
|
@@ -1,21 +1,21 @@
|
|
|
1
1
|
WARN Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
|
|
2
2
|
|
|
3
|
-
> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.6.
|
|
3
|
+
> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.6.1 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
|
|
4
4
|
> vitest
|
|
5
5
|
|
|
6
6
|
|
|
7
7
|
[1m[7m[36m RUN [39m[27m[22m [36mv2.1.8 [39m[90m/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow[39m
|
|
8
8
|
|
|
9
|
-
[32m✓[39m src/test/columns.test.ts [2m([22m[2m6 tests[22m[2m)[22m[33m
|
|
10
|
-
[33m[2m✓[22m[39m checking preset for 'milab-human-dna-xcr-7genes-multiplex' [
|
|
11
|
-
[33m[2m✓[22m[39m checking preset for '10x-sc-xcr-vdj' [
|
|
12
|
-
[33m[2m✓[22m[39m checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' [
|
|
13
|
-
[33m[2m✓[22m[39m checking preset for 'takara-human-rna-bcr-umi-smartseq' [
|
|
14
|
-
[33m[2m✓[22m[39m checking preset for 'rna-seq' [
|
|
15
|
-
[33m[2m✓[22m[39m checking preset for 'generic-single-cell-gex' [
|
|
9
|
+
[32m✓[39m src/test/columns.test.ts [2m([22m[2m6 tests[22m[2m)[22m[33m 55868[2mms[22m[39m
|
|
10
|
+
[33m[2m✓[22m[39m checking preset for 'milab-human-dna-xcr-7genes-multiplex' [33m14243[2mms[22m[39m
|
|
11
|
+
[33m[2m✓[22m[39m checking preset for '10x-sc-xcr-vdj' [33m8794[2mms[22m[39m
|
|
12
|
+
[33m[2m✓[22m[39m checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' [33m8380[2mms[22m[39m
|
|
13
|
+
[33m[2m✓[22m[39m checking preset for 'takara-human-rna-bcr-umi-smartseq' [33m8294[2mms[22m[39m
|
|
14
|
+
[33m[2m✓[22m[39m checking preset for 'rna-seq' [33m7887[2mms[22m[39m
|
|
15
|
+
[33m[2m✓[22m[39m checking preset for 'generic-single-cell-gex' [33m8268[2mms[22m[39m
|
|
16
16
|
|
|
17
17
|
[2m Test Files [22m [1m[32m1 passed[39m[22m[90m (1)[39m
|
|
18
18
|
[2m Tests [22m [1m[32m6 passed[39m[22m[90m (6)[39m
|
|
19
|
-
[2m Start at [22m
|
|
20
|
-
[2m Duration [22m
|
|
19
|
+
[2m Start at [22m 16:45:12
|
|
20
|
+
[2m Duration [22m 56.68s[2m (transform 41ms, setup 0ms, collect 572ms, tests 55.87s, environment 0ms, prepare 60ms)[22m
|
|
21
21
|
|
package/CHANGELOG.md
CHANGED
|
@@ -1,5 +1,11 @@
|
|
|
1
1
|
# @platforma-open/milaboratories.mixcr-clonotyping.workflow
|
|
2
2
|
|
|
3
|
+
## 2.6.1
|
|
4
|
+
|
|
5
|
+
### Patch Changes
|
|
6
|
+
|
|
7
|
+
- 24b689b: Fixes spec for mutation columns (adds pl7.app/vdj/gene domain to make column ids for V and J genes distinguishable)
|
|
8
|
+
|
|
3
9
|
## 2.6.0
|
|
4
10
|
|
|
5
11
|
### Minor Changes
|
|
@@ -417,6 +417,9 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
|
|
|
417
417
|
spec: {
|
|
418
418
|
valueType: variant.valueType,
|
|
419
419
|
name: "pl7.app/vdj/sequence/" + alphabetShortMixcr + variant.name,
|
|
420
|
+
domain: {
|
|
421
|
+
"pl7.app/vdj/gene": geneU
|
|
422
|
+
},
|
|
420
423
|
annotations: a(orderP, false, {
|
|
421
424
|
"pl7.app/label": alphabetShort + variant.labelPart + geneU + " gene"
|
|
422
425
|
})
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
package/package.json
CHANGED
|
@@ -1,16 +1,16 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
|
|
3
|
-
"version": "2.6.
|
|
3
|
+
"version": "2.6.1",
|
|
4
4
|
"description": "Tengo-based template",
|
|
5
5
|
"dependencies": {
|
|
6
|
-
"@platforma-sdk/workflow-tengo": "^
|
|
6
|
+
"@platforma-sdk/workflow-tengo": "^4.0.3",
|
|
7
7
|
"@platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts": "1.1.1"
|
|
8
8
|
},
|
|
9
9
|
"devDependencies": {
|
|
10
|
-
"@platforma-sdk/tengo-builder": "^2.0.
|
|
10
|
+
"@platforma-sdk/tengo-builder": "^2.0.3",
|
|
11
11
|
"@platforma-open/milaboratories.software-mixcr": "4.7.0-149-develop",
|
|
12
12
|
"@platforma-open/milaboratories.software-ptransform": "^1.3.1",
|
|
13
|
-
"@platforma-sdk/test": "^1.
|
|
13
|
+
"@platforma-sdk/test": "^1.28.2",
|
|
14
14
|
"vitest": "^2.1.8",
|
|
15
15
|
"typescript": "~5.5.4"
|
|
16
16
|
},
|
|
@@ -417,6 +417,9 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
|
|
|
417
417
|
spec: {
|
|
418
418
|
valueType: variant.valueType,
|
|
419
419
|
name: "pl7.app/vdj/sequence/" + alphabetShortMixcr + variant.name,
|
|
420
|
+
domain: {
|
|
421
|
+
"pl7.app/vdj/gene": geneU
|
|
422
|
+
},
|
|
420
423
|
annotations: a(orderP, false, {
|
|
421
424
|
"pl7.app/label": alphabetShort + variant.labelPart + geneU + " gene"
|
|
422
425
|
})
|