@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 2.3.3 → 2.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/.turbo/turbo-test.log +10 -10
- package/CHANGELOG.md +12 -0
- package/dist/tengo/lib/calculate-export-specs.lib.tengo +1 -1
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +1 -1
- package/src/calculate-export-specs.lib.tengo +1 -1
- package/src/main.tpl.tengo +2 -2
package/.turbo/turbo-build.log
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.4.1 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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info: Skipping unknown file type: test/columns.test.ts
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package/.turbo/turbo-test.log
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.4.1 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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> vitest
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[1m[7m[36m RUN [39m[27m[22m [36mv2.1.8 [39m[90m/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow[39m
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[32m✓[39m src/test/columns.test.ts [2m([22m[2m6 tests[22m[2m)[22m[33m
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[33m[2m✓[22m[39m checking preset for 'milab-human-dna-xcr-7genes-multiplex' [
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[33m[2m✓[22m[39m checking preset for '10x-sc-xcr-vdj' [
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[33m[2m✓[22m[39m checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' [
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[33m[2m✓[22m[39m checking preset for 'takara-human-rna-bcr-umi-smartseq' [
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[33m[2m✓[22m[39m checking preset for 'rna-seq' [
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[33m[2m✓[22m[39m checking preset for 'generic-single-cell-gex' [
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[32m✓[39m src/test/columns.test.ts [2m([22m[2m6 tests[22m[2m)[22m[33m 53502[2mms[22m[39m
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[33m[2m✓[22m[39m checking preset for 'milab-human-dna-xcr-7genes-multiplex' [33m13417[2mms[22m[39m
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[33m[2m✓[22m[39m checking preset for 'takara-human-rna-bcr-umi-smartseq' [33m8241[2mms[22m[39m
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[33m[2m✓[22m[39m checking preset for 'rna-seq' [33m7618[2mms[22m[39m
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[2m Test Files [22m [1m[32m1 passed[39m[22m[90m (1)[39m
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[2m Tests [22m [1m[32m6 passed[39m[22m[90m (6)[39m
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[2m Start at [22m
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[2m Duration [22m
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[2m Start at [22m 17:05:40
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[2m Duration [22m 54.41s[2m (transform 56ms, setup 0ms, collect 641ms, tests 53.50s, environment 0ms, prepare 74ms)[22m
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package/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-clonotyping.workflow
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## 2.4.1
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### Patch Changes
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- cd6367a: Added UI control to select receptor or chain
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## 2.4.0
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### Minor Changes
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- 46dd332: Update value options in Productive column
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## 2.3.3
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### Patch Changes
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@@ -461,7 +461,7 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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annotations: a(orderP, variant.visibility, {
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"pl7.app/label": variant.label,
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"pl7.app/isDiscreteFilter": "true",
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"pl7.app/discreteValues": "
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"pl7.app/discreteValues": string(json.encode(["True", "False"])) } )
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}
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} ]
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exportArgs += [ [ variant.arg, productiveFeature ] ]
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package/package.json
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annotations: a(orderP, variant.visibility, {
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"pl7.app/label": variant.label,
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"pl7.app/isDiscreteFilter": "true",
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"pl7.app/discreteValues": "
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"pl7.app/discreteValues": string(json.encode(["True", "False"])) } )
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}
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} ]
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exportArgs += [ [ variant.arg, productiveFeature ] ]
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package/src/main.tpl.tengo
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presetSpecForBack := presetInfoResult.output("presetSpecForBack", 24 * 60 * 60 * 1000)
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// calculating chains
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// chains := ["IGHeavy", "IGLight", "
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// chains := ["IGHeavy", "IGLight", "TCRAlpha", "TCRBeta", "TCRGamma", "TCRDelta"]
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//receptorsOrChains := ["IG", "TCRAB", "TCRGD"]
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receptorsOrChains := ["IG"]
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receptorsOrChains := ["IG", "TCRAB", "TCRGD"]
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if !is_undefined(args.chains) {
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receptorsOrChains = args.chains
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}
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